RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 SLC25A10Q9UBX3 287 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-216ENST00000541410 FAM96BQ9Y3D0 163 aa11.99□□□□□ -0.49
CLIP1-216ENST00000541410 MMP24Q9Y5R2 645 aa11.99□□□□□ -0.49
CLIP1-216ENST00000541410 AKAP6Q13023 2319 aa11.99□□□□□ -0.49
CLIP1-216ENST00000541410 PPIAL4EA0A075B759 164 aa11.99□□□□□ -0.49
CLIP1-216ENST00000541410 PPIAL4DF5H284 164 aa11.99□□□□□ -0.49
CLIP1-216ENST00000541410 SHOXO15266 292 aa11.99□□□□□ -0.49
CLIP1-216ENST00000541410 APOC3P02656 99 aa11.99□□□□□ -0.49
CLIP1-216ENST00000541410 PPIAL4FP0DN26 164 aa11.99□□□□□ -0.49
CLIP1-216ENST00000541410 CCL3L1P16619 93 aa11.99□□□□□ -0.49
CLIP1-216ENST00000541410 APOBEC3AP31941 199 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-216ENST00000541410 TAGLNQ01995 201 aaKnown RBP11.99□□□□□ -0.49
CLIP1-216ENST00000541410 HNF4GQ14541 408 aa11.99□□□□□ -0.49
CLIP1-216ENST00000541410 SPANXN5Q5MJ07 72 aa11.99□□□□□ -0.49
CLIP1-216ENST00000541410 H1FXQ92522 213 aaKnown RBP11.99□□□□□ -0.49
CLIP1-216ENST00000541410 MARVELD3Q96A59 401 aa11.99□□□□□ -0.49
CLIP1-216ENST00000541410 PSENENQ9NZ42 101 aa11.99□□□□□ -0.49
CLIP1-216ENST00000541410 PPIAL4AQ9Y536 164 aa11.99□□□□□ -0.49
CLIP1-216ENST00000541410 ZNF616Q08AN1 781 aa11.98□□□□□ -0.49
CLIP1-216ENST00000541410 LYG1Q8N1E2 194 aa11.98□□□□□ -0.49
CLIP1-216ENST00000541410 ZDHHC16Q969W1 377 aa11.98□□□□□ -0.49
CLIP1-216ENST00000541410 SMIM8Q96KF7 97 aa11.98□□□□□ -0.49
CLIP1-216ENST00000541410 DIRC2Q96SL1 478 aa11.98□□□□□ -0.49
CLIP1-216ENST00000541410 HSD17B10Q99714 261 aaKnown RBP11.98□□□□□ -0.49
CLIP1-216ENST00000541410 GINS3Q9BRX5 216 aa11.98□□□□□ -0.49
CLIP1-216ENST00000541410 ABHD14AQ9BUJ0 271 aa11.98□□□□□ -0.49
CLIP1-216ENST00000541410 SEBOXQ9HB31 216 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-216ENST00000541410 TRAV38-1A0A0B4J264 116 aa11.98□□□□□ -0.49
CLIP1-216ENST00000541410 PRH1P02810 166 aa11.98□□□□□ -0.49
CLIP1-216ENST00000541410 SPP1P10451 314 aa11.98□□□□□ -0.49
CLIP1-216ENST00000541410 SLC25A6P12236 298 aa11.98□□□□□ -0.49
CLIP1-216ENST00000541410 OR2B8PP59922 312 aa11.98□□□□□ -0.49
CLIP1-216ENST00000541410 RPL23AP62750 156 aaKnown RBP11.98□□□□□ -0.49
CLIP1-216ENST00000541410 ARL16Q0P5N6 197 aa11.98□□□□□ -0.49
CLIP1-216ENST00000541410 SWI5Q1ZZU3 235 aa11.98□□□□□ -0.49
CLIP1-216ENST00000541410 FAM209AQ5JX71 171 aa11.98□□□□□ -0.49
CLIP1-216ENST00000541410 H2BFWTQ7Z2G1 175 aa11.98□□□□□ -0.49
CLIP1-216ENST00000541410 EIF4E3Q8N5X7 224 aaKnown RBP11.98□□□□□ -0.49
CLIP1-216ENST00000541410 ARV1Q9H2C2 271 aa11.98□□□□□ -0.49
CLIP1-216ENST00000541410 RBKSQ9H477 322 aa11.98□□□□□ -0.49
CLIP1-216ENST00000541410 GFOD1Q9NXC2 390 aa11.98□□□□□ -0.49
CLIP1-216ENST00000541410 NKX6-3A6NJ46 265 aa11.97□□□□□ -0.49
CLIP1-216ENST00000541410 MARCH11A6NNE9 402 aa11.97□□□□□ -0.49
CLIP1-216ENST00000541410 LY6HO94772 140 aa11.97□□□□□ -0.49
CLIP1-216ENST00000541410 ATP6V0CP27449 155 aa11.97□□□□□ -0.49
CLIP1-216ENST00000541410 UBE2KP61086 200 aa11.97□□□□□ -0.49
CLIP1-216ENST00000541410 ZNF66Q6ZN08 573 aa11.97□□□□□ -0.49
CLIP1-216ENST00000541410 PRORYQ9H606 182 aa11.97□□□□□ -0.49
CLIP1-216ENST00000541410 ARHGAP32A7KAX9 2087 aa11.97□□□□□ -0.49
CLIP1-216ENST00000541410 CACNA1AO00555 2505 aa11.97□□□□□ -0.49
CLIP1-216ENST00000541410 TNCP24821 2201 aa11.97□□□□□ -0.49
CLIP1-216ENST00000541410 SAA2-SAA4A0A096LPE2 208 aa11.97□□□□□ -0.49
CLIP1-216ENST00000541410 SAA2P0DJI9 122 aaPredicted RBP11.97□□□□□ -0.49
CLIP1-216ENST00000541410 RPL31P62899 125 aaKnown RBP11.97□□□□□ -0.49
CLIP1-216ENST00000541410 MUC15Q8N387 334 aa11.97□□□□□ -0.49
CLIP1-216ENST00000541410 R3HDM4Q96D70 268 aa11.97□□□□□ -0.49
CLIP1-216ENST00000541410 RAB40CQ96S21 281 aa11.97□□□□□ -0.49
CLIP1-216ENST00000541410 MS4A5Q9H3V2 200 aa11.97□□□□□ -0.49
CLIP1-216ENST00000541410 CTSZQ9UBR2 303 aa11.97□□□□□ -0.49
CLIP1-216ENST00000541410 MALRD1Q5VYJ5 2156 aa11.96□□□□□ -0.49
CLIP1-216ENST00000541410 KRBOX1C9JBD0 128 aa11.96□□□□□ -0.49
CLIP1-216ENST00000541410 ZG16O60844 167 aa11.96□□□□□ -0.49
CLIP1-216ENST00000541410 CRYZL1O95825 349 aa11.96□□□□□ -0.49
CLIP1-216ENST00000541410 F12P00748 615 aaPredicted RBP11.96□□□□□ -0.49
CLIP1-216ENST00000541410 TNFRSF9Q07011 255 aa11.96□□□□□ -0.49
CLIP1-216ENST00000541410 MIDNQ504T8 468 aa11.96□□□□□ -0.49
CLIP1-216ENST00000541410 ATRAIDQ6UW56 229 aa11.96□□□□□ -0.49
CLIP1-216ENST00000541410 SSX8Q7RTT4 187 aa11.96□□□□□ -0.49
CLIP1-216ENST00000541410 HAPLN4Q86UW8 402 aa11.96□□□□□ -0.49
CLIP1-216ENST00000541410 STX12Q86Y82 276 aa11.96□□□□□ -0.49
CLIP1-216ENST00000541410 C1orf87Q8N0U7 546 aa11.96□□□□□ -0.49
CLIP1-216ENST00000541410 OR2G3Q8NGZ4 309 aa11.96□□□□□ -0.49
CLIP1-216ENST00000541410 FAM212BQ9NTI7 297 aaPredicted RBP11.96□□□□□ -0.49
CLIP1-216ENST00000541410 IGHV1-69-2A0A0G2JMI3 117 aa11.96□□□□□ -0.5
CLIP1-216ENST00000541410 TOR1AO14656 332 aa11.96□□□□□ -0.5
CLIP1-216ENST00000541410 OR9G9P0C7N8 305 aa11.96□□□□□ -0.5
CLIP1-216ENST00000541410 SEC11BP0C7V7 166 aa11.96□□□□□ -0.5
CLIP1-216ENST00000541410 P0C879 139 aa11.96□□□□□ -0.5
CLIP1-216ENST00000541410 UQCRFS1P47985 274 aa11.96□□□□□ -0.5
CLIP1-216ENST00000541410 CAMLGP49069 296 aa11.96□□□□□ -0.5
CLIP1-216ENST00000541410 DEFA5Q01523 94 aa11.96□□□□□ -0.5
CLIP1-216ENST00000541410 ZNF266Q14584 549 aa11.96□□□□□ -0.5
CLIP1-216ENST00000541410 OR8G2PQ6IF36 304 aa11.96□□□□□ -0.5
CLIP1-216ENST00000541410 TREM1Q9NP99 234 aa11.96□□□□□ -0.5
CLIP1-216ENST00000541410 MMP26Q9NRE1 261 aa11.96□□□□□ -0.5
CLIP1-216ENST00000541410 IDI2-AS1Q9NZ38 188 aa11.96□□□□□ -0.5
CLIP1-216ENST00000541410 WSB1Q9Y6I7 421 aa11.96□□□□□ -0.5
CLIP1-216ENST00000541410 SPTAN1Q13813 2472 aaKnown RBP11.95□□□□□ -0.5
CLIP1-216ENST00000541410 MMP9P14780 707 aa11.95□□□□□ -0.5
CLIP1-216ENST00000541410 COL8A2P25067 703 aa11.95□□□□□ -0.5
CLIP1-216ENST00000541410 PLA2G5P39877 138 aa11.95□□□□□ -0.5
CLIP1-216ENST00000541410 SULT1A1P50225 295 aa11.95□□□□□ -0.5
CLIP1-216ENST00000541410 PRB3Q04118 309 aaPredicted RBP11.95□□□□□ -0.5
CLIP1-216ENST00000541410 FBXL19-AS1Q494R0 122 aa11.95□□□□□ -0.5
CLIP1-216ENST00000541410 FAM213BQ8TBF2 198 aa11.95□□□□□ -0.5
CLIP1-216ENST00000541410 SAT2Q96F10 170 aaPredicted RBP11.95□□□□□ -0.5
CLIP1-216ENST00000541410 CACFD1Q9UGQ2 172 aa11.95□□□□□ -0.5
CLIP1-216ENST00000541410 TRAV3A0A0B4J244 114 aa11.94□□□□□ -0.5
CLIP1-216ENST00000541410 B9A039 149 aa11.94□□□□□ -0.5
CLIP1-216ENST00000541410 DVL1O14640 695 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms