RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 IGLV2-14P01704 120 aa11.09□□□□□ -0.63
USP28-209ENST00000540925 IGLV2-23P01705 113 aa11.09□□□□□ -0.63
USP28-209ENST00000540925 OR5H8P0DN80 308 aa11.09□□□□□ -0.63
USP28-209ENST00000540925 VDAC1P21796 283 aa11.09□□□□□ -0.63
USP28-209ENST00000540925 CDX1P47902 265 aaPredicted RBP11.09□□□□□ -0.63
USP28-209ENST00000540925 CX3CL1P78423 397 aa11.09□□□□□ -0.63
USP28-209ENST00000540925 SSBP2P81877 361 aaPredicted RBP11.09□□□□□ -0.63
USP28-209ENST00000540925 ZNF660Q6AZW8 331 aaPredicted RBP11.09□□□□□ -0.63
USP28-209ENST00000540925 CNIH2Q6PI25 160 aa11.09□□□□□ -0.63
USP28-209ENST00000540925 LCNL1Q6ZST4 164 aa11.09□□□□□ -0.63
USP28-209ENST00000540925 C8orf86Q6ZUL3 223 aa11.09□□□□□ -0.63
USP28-209ENST00000540925 ZNF695Q8IW36 515 aa11.09□□□□□ -0.63
USP28-209ENST00000540925 MRPL41Q8IXM3 137 aaKnown RBP11.09□□□□□ -0.63
USP28-209ENST00000540925 ST6GALNAC5Q9BVH7 336 aa11.09□□□□□ -0.63
USP28-209ENST00000540925 KIAA1456Q9P272 454 aa11.09□□□□□ -0.63
USP28-209ENST00000540925 TRAV18A0A075B6X5 111 aa11.08□□□□□ -0.64
USP28-209ENST00000540925 H7C2Y5 167 aa11.08□□□□□ -0.64
USP28-209ENST00000540925 HLA-DQB1P01920 261 aa11.08□□□□□ -0.64
USP28-209ENST00000540925 PF4P02776 101 aa11.08□□□□□ -0.64
USP28-209ENST00000540925 CRYGBP07316 175 aa11.08□□□□□ -0.64
USP28-209ENST00000540925 CTXN2P0C2S0 81 aa11.08□□□□□ -0.64
USP28-209ENST00000540925 IGLL1P15814 213 aa11.08□□□□□ -0.64
USP28-209ENST00000540925 GNG2P59768 71 aa11.08□□□□□ -0.64
USP28-209ENST00000540925 CXorf66Q5JRM2 361 aaPredicted RBP11.08□□□□□ -0.64
USP28-209ENST00000540925 KLHL30-AS1Q8NEE0 82 aa11.08□□□□□ -0.64
USP28-209ENST00000540925 SLC25A46Q96AG3 418 aa11.08□□□□□ -0.64
USP28-209ENST00000540925 GINS4Q9BRT9 223 aa11.08□□□□□ -0.64
USP28-209ENST00000540925 FUNDC2Q9BWH2 189 aa11.08□□□□□ -0.64
USP28-209ENST00000540925 AUNIPQ9H7T9 357 aa11.08□□□□□ -0.64
USP28-209ENST00000540925 ANXA10Q9UJ72 324 aa11.08□□□□□ -0.64
USP28-209ENST00000540925 NUBP2Q9Y5Y2 271 aa11.08□□□□□ -0.64
USP28-209ENST00000540925 WSB1Q9Y6I7 421 aa11.08□□□□□ -0.64
USP28-209ENST00000540925 TRAV41A0A0B4J266 112 aa11.07□□□□□ -0.64
USP28-209ENST00000540925 IGKV1D-13A0A0B4J2D9 117 aa11.07□□□□□ -0.64
USP28-209ENST00000540925 LINC00473A8K010 186 aa11.07□□□□□ -0.64
USP28-209ENST00000540925 XRCC3O43542 346 aa11.07□□□□□ -0.64
USP28-209ENST00000540925 SOX15O60248 233 aa11.07□□□□□ -0.64
USP28-209ENST00000540925 APOA2P02652 100 aa11.07□□□□□ -0.64
USP28-209ENST00000540925 IGKV1-13P0DP09 117 aa11.07□□□□□ -0.64
USP28-209ENST00000540925 CD33P20138 364 aa11.07□□□□□ -0.64
USP28-209ENST00000540925 DUTP33316 252 aaKnown RBP11.07□□□□□ -0.64
USP28-209ENST00000540925 MYCNOSP40205 109 aa11.07□□□□□ -0.64
USP28-209ENST00000540925 NCS1P62166 190 aa11.07□□□□□ -0.64
USP28-209ENST00000540925 LSM3P62310 102 aaKnown RBP11.07□□□□□ -0.64
USP28-209ENST00000540925 TAGLNQ01995 201 aaKnown RBP11.07□□□□□ -0.64
USP28-209ENST00000540925 EIF4EBP1Q13541 118 aaPredicted RBP11.07□□□□□ -0.64
USP28-209ENST00000540925 MRGPRG-AS1Q2M3A8 158 aa11.07□□□□□ -0.64
USP28-209ENST00000540925 TMEM177Q53S58 311 aa11.07□□□□□ -0.64
USP28-209ENST00000540925 ZNF562Q6V9R5 426 aa11.07□□□□□ -0.64
USP28-209ENST00000540925 HOGA1Q86XE5 327 aa11.07□□□□□ -0.64
USP28-209ENST00000540925 RCC1LQ96I51 464 aaKnown RBP11.07□□□□□ -0.64
USP28-209ENST00000540925 RAX2Q96IS3 184 aa11.07□□□□□ -0.64
USP28-209ENST00000540925 TSNAXQ99598 290 aaKnown RBP11.07□□□□□ -0.64
USP28-209ENST00000540925 KLK15Q9H2R5 256 aa11.07□□□□□ -0.64
USP28-209ENST00000540925 PARP11Q9NR21 331 aa11.07□□□□□ -0.64
USP28-209ENST00000540925 TPSG1Q9NRR2 321 aa11.07□□□□□ -0.64
USP28-209ENST00000540925 SLC35D1Q9NTN3 355 aa11.07□□□□□ -0.64
USP28-209ENST00000540925 METTL1Q9UBP6 276 aaKnown RBP11.07□□□□□ -0.64
USP28-209ENST00000540925 OR2W1Q9Y3N9 320 aa11.07□□□□□ -0.64
USP28-209ENST00000540925 SRRM4A7MD48 611 aaKnown RBP11.06□□□□□ -0.64
USP28-209ENST00000540925 NFYAP23511 347 aaPredicted RBP11.06□□□□□ -0.64
USP28-209ENST00000540925 FHL3Q13643 280 aa11.06□□□□□ -0.64
USP28-209ENST00000540925 ZNF645Q8N7E2 425 aa11.06□□□□□ -0.64
USP28-209ENST00000540925 GVQW1Q8N7I0 195 aa11.06□□□□□ -0.64
USP28-209ENST00000540925 SNAPC3Q92966 411 aa11.06□□□□□ -0.64
USP28-209ENST00000540925 FLYWCH2Q96CP2 140 aaKnown RBP11.06□□□□□ -0.64
USP28-209ENST00000540925 KCTD12Q96CX2 325 aaKnown RBP11.06□□□□□ -0.64
USP28-209ENST00000540925 DIABLOQ9NR28 239 aa11.06□□□□□ -0.64
USP28-209ENST00000540925 ANAPC10Q9UM13 185 aa11.06□□□□□ -0.64
USP28-209ENST00000540925 ARPC1BO15143 372 aaKnown RBP11.05□□□□□ -0.64
USP28-209ENST00000540925 PTHLHP12272 177 aa11.05□□□□□ -0.64
USP28-209ENST00000540925 LGALS7P47929 136 aa11.05□□□□□ -0.64
USP28-209ENST00000540925 RPS16P62249 146 aaKnown RBP11.05□□□□□ -0.64
USP28-209ENST00000540925 RUNX1Q01196 453 aa11.05□□□□□ -0.64
USP28-209ENST00000540925 CTF1Q16619 201 aa11.05□□□□□ -0.64
USP28-209ENST00000540925 AKIRIN2Q53H80 203 aa11.05□□□□□ -0.64
USP28-209ENST00000540925 UBE2NLQ5JXB2 153 aa11.05□□□□□ -0.64
USP28-209ENST00000540925 FOXB2Q5VYV0 432 aa11.05□□□□□ -0.64
USP28-209ENST00000540925 OVCH2Q7RTZ1 564 aa11.05□□□□□ -0.64
USP28-209ENST00000540925 TCTEX1D1Q8N7M0 179 aa11.05□□□□□ -0.64
USP28-209ENST00000540925 ZNF491Q8N8L2 437 aa11.05□□□□□ -0.64
USP28-209ENST00000540925 BEST4Q8NFU0 473 aa11.05□□□□□ -0.64
USP28-209ENST00000540925 C4orf3Q8WVX3 66 aa11.05□□□□□ -0.64
USP28-209ENST00000540925 ADTRPQ96IZ2 230 aa11.05□□□□□ -0.64
USP28-209ENST00000540925 UBE2E2Q96LR5 201 aa11.05□□□□□ -0.64
USP28-209ENST00000540925 NUDT19A8MXV4 375 aa11.04□□□□□ -0.64
USP28-209ENST00000540925 I3L521 148 aa11.04□□□□□ -0.64
USP28-209ENST00000540925 CCL24O00175 119 aa11.04□□□□□ -0.64
USP28-209ENST00000540925 SLC25A17O43808 307 aa11.04□□□□□ -0.64
USP28-209ENST00000540925 SLC22A5O76082 557 aa11.04□□□□□ -0.64
USP28-209ENST00000540925 GABARAPO95166 117 aa11.04□□□□□ -0.64
USP28-209ENST00000540925 DUS4LO95620 317 aaKnown RBP11.04□□□□□ -0.64
USP28-209ENST00000540925 CA2P00918 260 aa11.04□□□□□ -0.64
USP28-209ENST00000540925 RRASP10301 218 aa11.04□□□□□ -0.64
USP28-209ENST00000540925 RAB9AP51151 201 aa11.04□□□□□ -0.64
USP28-209ENST00000540925 LUMP51884 338 aaPredicted RBP11.04□□□□□ -0.64
USP28-209ENST00000540925 BRWD1-AS2P59051 145 aa11.04□□□□□ -0.64
USP28-209ENST00000540925 VBP1P61758 197 aa11.04□□□□□ -0.64
USP28-209ENST00000540925 EGFEM1PQ0D2K5 195 aa11.04□□□□□ -0.64
USP28-209ENST00000540925 PJVKQ0ZLH3 352 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms