RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 OR10A7Q8NGE5 316 aa17.05■□□□□ 0.32
VPS28-209ENST00000528142 RAB40CQ96S21 281 aa17.05■□□□□ 0.32
VPS28-209ENST00000528142 SLC25A31Q9H0C2 315 aa17.05■□□□□ 0.32
VPS28-209ENST00000528142 PFDN2Q9UHV9 154 aa17.05■□□□□ 0.32
VPS28-209ENST00000528142 HCFC1P51610 2035 aa17.04■□□□□ 0.32
VPS28-209ENST00000528142 PKDREJQ9NTG1 2253 aa17.04■□□□□ 0.32
VPS28-209ENST00000528142 A0A1W2PPE3 182 aa17.04■□□□□ 0.32
VPS28-209ENST00000528142 FSTL3O95633 263 aa17.04■□□□□ 0.32
VPS28-209ENST00000528142 NFYBP25208 207 aa17.04■□□□□ 0.32
VPS28-209ENST00000528142 MIDNQ504T8 468 aa17.04■□□□□ 0.32
VPS28-209ENST00000528142 LRRC10Q5BKY1 277 aa17.04■□□□□ 0.32
VPS28-209ENST00000528142 ZNF436-AS1Q8NC38 126 aaPredicted RBP17.04■□□□□ 0.32
VPS28-209ENST00000528142 LRRC20Q8TCA0 184 aa17.04■□□□□ 0.32
VPS28-209ENST00000528142 RNF141Q8WVD5 230 aa17.04■□□□□ 0.32
VPS28-209ENST00000528142 LAMP3Q9UQV4 416 aa17.04■□□□□ 0.32
VPS28-209ENST00000528142 TANC2Q9HCD6 1990 aa17.04■□□□□ 0.32
VPS28-209ENST00000528142 DSCAML1Q8TD84 2053 aa17.04■□□□□ 0.32
VPS28-209ENST00000528142 DVL1O14640 695 aa17.03■□□□□ 0.32
VPS28-209ENST00000528142 TOR1AO14656 332 aa17.03■□□□□ 0.32
VPS28-209ENST00000528142 SYNGR2O43760 224 aa17.03■□□□□ 0.32
VPS28-209ENST00000528142 EIF5AL1Q6IS14 154 aaKnown RBP17.03■□□□□ 0.32
VPS28-209ENST00000528142 ZNF251Q9BRH9 671 aa17.03■□□□□ 0.32
VPS28-209ENST00000528142 GAL3ST2Q9H3Q3 398 aa17.03■□□□□ 0.32
VPS28-209ENST00000528142 FAM90A26D6RGX4 464 aa17.03■□□□□ 0.32
VPS28-209ENST00000528142 LYNX1G3V0Z9 82 aa17.03■□□□□ 0.32
VPS28-209ENST00000528142 RAB29O14966 203 aa17.03■□□□□ 0.32
VPS28-209ENST00000528142 LYNX1P0DP58 116 aa17.03■□□□□ 0.32
VPS28-209ENST00000528142 DDB2Q92466 427 aa17.03■□□□□ 0.32
VPS28-209ENST00000528142 CBLN4Q9NTU7 201 aa17.03■□□□□ 0.32
VPS28-209ENST00000528142 PLA2G2EQ9NZK7 142 aa17.03■□□□□ 0.32
VPS28-209ENST00000528142 LPAR3Q9UBY5 353 aa17.03■□□□□ 0.32
VPS28-209ENST00000528142 WSB1Q9Y6I7 421 aa17.03■□□□□ 0.32
VPS28-209ENST00000528142 BORCS7-ASMTA0A0B4J1R7 106 aa17.02■□□□□ 0.31
VPS28-209ENST00000528142 RBFOX2O43251 390 aaKnown RBP eCLIP17.02■□□□□ 0.314e-8■■■■□ 26.4
VPS28-209ENST00000528142 BAXQ07812 192 aa17.02■□□□□ 0.31
VPS28-209ENST00000528142 C11orf71Q6IPW1 123 aa17.02■□□□□ 0.31
VPS28-209ENST00000528142 HEPN1Q6WQI6 88 aa17.02■□□□□ 0.31
VPS28-209ENST00000528142 SLC25A48Q6ZT89 311 aaKnown RBP17.02■□□□□ 0.31
VPS28-209ENST00000528142 MARVELD3Q96A59 401 aa17.02■□□□□ 0.31
VPS28-209ENST00000528142 ZNF714Q96N38 554 aa17.02■□□□□ 0.31
VPS28-209ENST00000528142 ANKHD1Q8IWZ3 2542 aaKnown RBP17.02■□□□□ 0.31
VPS28-209ENST00000528142 SAA2-SAA4A0A096LPE2 208 aa17.01■□□□□ 0.31
VPS28-209ENST00000528142 TEX46H3BTG2 121 aa17.01■□□□□ 0.31
VPS28-209ENST00000528142 FCGR3BO75015 233 aa17.01■□□□□ 0.31
VPS28-209ENST00000528142 SAA2P0DJI9 122 aaPredicted RBP17.01■□□□□ 0.31
VPS28-209ENST00000528142 CCL3L1P16619 93 aa17.01■□□□□ 0.31
VPS28-209ENST00000528142 ERVFRD-1P60508 538 aa17.01■□□□□ 0.31
VPS28-209ENST00000528142 TOR2AQ5JU69 321 aa17.01■□□□□ 0.31
VPS28-209ENST00000528142 GINS3Q9BRX5 216 aa17.01■□□□□ 0.31
VPS28-209ENST00000528142 TXNL1O43396 289 aa17■□□□□ 0.31
VPS28-209ENST00000528142 HPRT1P00492 218 aa17■□□□□ 0.31
VPS28-209ENST00000528142 RPL23AP62750 156 aaKnown RBP17■□□□□ 0.31
VPS28-209ENST00000528142 MRPS11P82912 194 aaKnown RBP17■□□□□ 0.31
VPS28-209ENST00000528142 HSD17B13Q7Z5P4 300 aaPredicted RBP17■□□□□ 0.31
VPS28-209ENST00000528142 EIF4E3Q8N5X7 224 aaKnown RBP17■□□□□ 0.31
VPS28-209ENST00000528142 H1FXQ92522 213 aaKnown RBP17■□□□□ 0.31
VPS28-209ENST00000528142 SMIM8Q96KF7 97 aa17■□□□□ 0.31
VPS28-209ENST00000528142 CTNNBIP1Q9NSA3 81 aaPredicted RBP17■□□□□ 0.31
VPS28-209ENST00000528142 HSPB7Q9UBY9 170 aa17■□□□□ 0.31
VPS28-209ENST00000528142 MARCH11A6NNE9 402 aa17■□□□□ 0.31
VPS28-209ENST00000528142 I3L521 148 aa17■□□□□ 0.31
VPS28-209ENST00000528142 FBXO24O75426 580 aa17■□□□□ 0.31
VPS28-209ENST00000528142 IGHV2-70P01814 119 aa17■□□□□ 0.31
VPS28-209ENST00000528142 FGF2P09038 288 aa17■□□□□ 0.31
VPS28-209ENST00000528142 DAOP14920 347 aa17■□□□□ 0.31
VPS28-209ENST00000528142 GNG10P50151 68 aa17■□□□□ 0.31
VPS28-209ENST00000528142 TAS2R30P59541 319 aa17■□□□□ 0.31
VPS28-209ENST00000528142 H2BFWTQ7Z2G1 175 aa17■□□□□ 0.31
VPS28-209ENST00000528142 LYG1Q8N1E2 194 aa17■□□□□ 0.31
VPS28-209ENST00000528142 PRELID3BQ9Y3B1 194 aa17■□□□□ 0.31
VPS28-209ENST00000528142 ZNF462Q96JM2 2506 aa17■□□□□ 0.31
VPS28-209ENST00000528142 CST7O76096 145 aa16.99■□□□□ 0.31
VPS28-209ENST00000528142 SOD3P08294 240 aa16.99■□□□□ 0.31
VPS28-209ENST00000528142 KIR2DS2P43631 304 aa16.99■□□□□ 0.31
VPS28-209ENST00000528142 SULT1A2P50226 295 aa16.99■□□□□ 0.31
VPS28-209ENST00000528142 TNFRSF9Q07011 255 aa16.99■□□□□ 0.31
VPS28-209ENST00000528142 R3HDM4Q96D70 268 aa16.99■□□□□ 0.31
VPS28-209ENST00000528142 S1PR3Q99500 378 aa16.99■□□□□ 0.31
VPS28-209ENST00000528142 RAB1BQ9H0U4 201 aa16.99■□□□□ 0.31
VPS28-209ENST00000528142 RALYQ9UKM9 306 aaKnown RBP16.99■□□□□ 0.31
VPS28-209ENST00000528142 A8MXK9 166 aa16.98■□□□□ 0.31
VPS28-209ENST00000528142 SEC11BP0C7V7 166 aa16.98■□□□□ 0.31
VPS28-209ENST00000528142 DANCRP0C864 163 aa16.98■□□□□ 0.31
VPS28-209ENST00000528142 SPP1P10451 314 aa16.98■□□□□ 0.31
VPS28-209ENST00000528142 IAPPP10997 89 aa16.98■□□□□ 0.31
VPS28-209ENST00000528142 DLX6P56179 175 aa16.98■□□□□ 0.31
VPS28-209ENST00000528142 UBE2KP61086 200 aa16.98■□□□□ 0.31
VPS28-209ENST00000528142 OR1S2Q8NGQ3 325 aa16.98■□□□□ 0.31
VPS28-209ENST00000528142 OR5C1Q8NGR4 320 aa16.98■□□□□ 0.31
VPS28-209ENST00000528142 PSENENQ9NZ42 101 aa16.98■□□□□ 0.31
VPS28-209ENST00000528142 USF3Q68DE3 2245 aa16.98■□□□□ 0.31
VPS28-209ENST00000528142 A0A1W2PPR1 153 aa16.98■□□□□ 0.31
VPS28-209ENST00000528142 H3BP45 60 aa16.98■□□□□ 0.31
VPS28-209ENST00000528142 SULT1A1P50225 295 aa16.98■□□□□ 0.31
VPS28-209ENST00000528142 DYNLT3P51808 116 aa16.98■□□□□ 0.31
VPS28-209ENST00000528142 CLINT1Q14677 625 aa16.98■□□□□ 0.31
VPS28-209ENST00000528142 TMEM155Q4W5P6 130 aa16.98■□□□□ 0.31
VPS28-209ENST00000528142 DTX2Q86UW9 622 aa16.98■□□□□ 0.31
VPS28-209ENST00000528142 ZNF383Q8NA42 475 aa16.98■□□□□ 0.31
VPS28-209ENST00000528142 SAT2Q96F10 170 aaPredicted RBP16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms