RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 NPBQ8NG41 125 aa11.35□□□□□ -0.59
NUP54-216ENST00000514901 OR6F1Q8NGZ6 308 aa11.35□□□□□ -0.59
NUP54-216ENST00000514901 OR52I2Q8NH67 350 aa11.35□□□□□ -0.59
NUP54-216ENST00000514901 BORCS5Q969J3 196 aa11.35□□□□□ -0.59
NUP54-216ENST00000514901 RASL11BQ9BPW5 248 aa11.35□□□□□ -0.59
NUP54-216ENST00000514901 LIN7CQ9NUP9 197 aaKnown RBP11.35□□□□□ -0.59
NUP54-216ENST00000514901 RBMX2Q9Y388 322 aaKnown RBP11.35□□□□□ -0.59
NUP54-216ENST00000514901 IGKV1D-13A0A0B4J2D9 117 aa11.34□□□□□ -0.59
NUP54-216ENST00000514901 J3QRK9 145 aa11.34□□□□□ -0.59
NUP54-216ENST00000514901 HAX1O00165 279 aa11.34□□□□□ -0.59
NUP54-216ENST00000514901 PEX14O75381 377 aa11.34□□□□□ -0.59
NUP54-216ENST00000514901 IGKV1-13P0DP09 117 aa11.34□□□□□ -0.59
NUP54-216ENST00000514901 DUTP33316 252 aaKnown RBP11.34□□□□□ -0.59
NUP54-216ENST00000514901 F2RL1P55085 397 aa11.34□□□□□ -0.59
NUP54-216ENST00000514901 TSPAN5P62079 268 aa11.34□□□□□ -0.59
NUP54-216ENST00000514901 MMDQ15546 238 aa11.34□□□□□ -0.59
NUP54-216ENST00000514901 RTL8BQ17RB0 113 aa11.34□□□□□ -0.59
NUP54-216ENST00000514901 VAX1Q5SQQ9 334 aa11.34□□□□□ -0.59
NUP54-216ENST00000514901 Q8N9W7 124 aa11.34□□□□□ -0.59
NUP54-216ENST00000514901 WFDC12Q8WWY7 111 aa11.34□□□□□ -0.59
NUP54-216ENST00000514901 FLYWCH2Q96CP2 140 aaKnown RBP11.34□□□□□ -0.59
NUP54-216ENST00000514901 HSD17B10Q99714 261 aaKnown RBP11.34□□□□□ -0.59
NUP54-216ENST00000514901 SOSTQ9BQB4 213 aa11.34□□□□□ -0.59
NUP54-216ENST00000514901 SLC35D1Q9NTN3 355 aa11.34□□□□□ -0.59
NUP54-216ENST00000514901 SERTAD4Q9NUC0 356 aa11.34□□□□□ -0.59
NUP54-216ENST00000514901 KIAA1456Q9P272 454 aa11.34□□□□□ -0.59
NUP54-216ENST00000514901 KLK11Q9UBX7 282 aa11.34□□□□□ -0.59
NUP54-216ENST00000514901 SIGLEC9Q9Y336 463 aa11.34□□□□□ -0.59
NUP54-216ENST00000514901 NBR2O15453 112 aa11.33□□□□□ -0.6
NUP54-216ENST00000514901 PTBP1P26599 531 aaKnown RBP eCLIP11.33□□□□□ -0.69e-7■■□□□ 12.2
NUP54-216ENST00000514901 LGALS7P47929 136 aa11.33□□□□□ -0.6
NUP54-216ENST00000514901 TAS2R19P59542 299 aa11.33□□□□□ -0.6
NUP54-216ENST00000514901 C9orf152Q5JTZ5 239 aa11.33□□□□□ -0.6
NUP54-216ENST00000514901 ZNF660Q6AZW8 331 aaPredicted RBP11.33□□□□□ -0.6
NUP54-216ENST00000514901 ZNF66Q6ZN08 573 aa11.33□□□□□ -0.6
NUP54-216ENST00000514901 Q6ZS46 218 aa11.33□□□□□ -0.6
NUP54-216ENST00000514901 TMEM17Q86X19 198 aa11.33□□□□□ -0.6
NUP54-216ENST00000514901 FAM71E2Q8N5Q1 922 aa11.33□□□□□ -0.6
NUP54-216ENST00000514901 TMEM229BQ8NBD8 167 aa11.33□□□□□ -0.6
NUP54-216ENST00000514901 SMIM4Q8WVI0 70 aa11.33□□□□□ -0.6
NUP54-216ENST00000514901 SECTM1Q8WVN6 248 aa11.33□□□□□ -0.6
NUP54-216ENST00000514901 TSNAXQ99598 290 aaKnown RBP11.33□□□□□ -0.6
NUP54-216ENST00000514901 ZNF2Q9BSG1 426 aaPredicted RBP11.33□□□□□ -0.6
NUP54-216ENST00000514901 SLC5A7Q9GZV3 580 aa11.33□□□□□ -0.6
NUP54-216ENST00000514901 TAS2R8Q9NYW2 309 aa11.33□□□□□ -0.6
NUP54-216ENST00000514901 PRELID3BQ9Y3B1 194 aa11.33□□□□□ -0.6
NUP54-216ENST00000514901 KCNAB3O43448 404 aa11.32□□□□□ -0.6
NUP54-216ENST00000514901 GSTZ1O43708 216 aaPredicted RBP11.32□□□□□ -0.6
NUP54-216ENST00000514901 NDUFA3O95167 84 aa11.32□□□□□ -0.6
NUP54-216ENST00000514901 IGLV2-14P01704 120 aa11.32□□□□□ -0.6
NUP54-216ENST00000514901 IGHG2P01859 326 aa11.32□□□□□ -0.6
NUP54-216ENST00000514901 IFNA6P05013 189 aa11.32□□□□□ -0.6
NUP54-216ENST00000514901 LINC00205P59089 165 aa11.32□□□□□ -0.6
NUP54-216ENST00000514901 FXYD4P59646 89 aa11.32□□□□□ -0.6
NUP54-216ENST00000514901 RPS16P62249 146 aaKnown RBP11.32□□□□□ -0.6
NUP54-216ENST00000514901 DGCR2P98153 550 aa11.32□□□□□ -0.6
NUP54-216ENST00000514901 RNASE12Q5GAN4 147 aaKnown RBP11.32□□□□□ -0.6
NUP54-216ENST00000514901 LPCAT3Q6P1A2 487 aa11.32□□□□□ -0.6
NUP54-216ENST00000514901 MOB3AQ96BX8 217 aa11.32□□□□□ -0.6
NUP54-216ENST00000514901 C5orf30Q96GV9 206 aa11.32□□□□□ -0.6
NUP54-216ENST00000514901 RITA1Q96K30 269 aa11.32□□□□□ -0.6
NUP54-216ENST00000514901 WNT10AQ9GZT5 417 aa11.32□□□□□ -0.6
NUP54-216ENST00000514901 DNHD1Q96M86 4753 aa11.32□□□□□ -0.6
NUP54-216ENST00000514901 SPDEFO95238 335 aa11.31□□□□□ -0.6
NUP54-216ENST00000514901 CD74P04233 296 aa11.31□□□□□ -0.6
NUP54-216ENST00000514901 IGKV1-16P04430 117 aa11.31□□□□□ -0.6
NUP54-216ENST00000514901 CSF1P09603 554 aa11.31□□□□□ -0.6
NUP54-216ENST00000514901 VSIG10L2P0DP72 767 aa11.31□□□□□ -0.6
NUP54-216ENST00000514901 C5orf64Q2M2E5 130 aa11.31□□□□□ -0.6
NUP54-216ENST00000514901 RNASE10Q5GAN6 216 aaKnown RBP11.31□□□□□ -0.6
NUP54-216ENST00000514901 SPANXN2Q5MJ10 180 aa11.31□□□□□ -0.6
NUP54-216ENST00000514901 FOXB2Q5VYV0 432 aa11.31□□□□□ -0.6
NUP54-216ENST00000514901 LIN54Q6MZP7 749 aa11.31□□□□□ -0.6
NUP54-216ENST00000514901 SLC35E3Q7Z769 313 aa11.31□□□□□ -0.6
NUP54-216ENST00000514901 FOXRED2Q8IWF2 684 aa11.31□□□□□ -0.6
NUP54-216ENST00000514901 ARRDC1Q8N5I2 433 aa11.31□□□□□ -0.6
NUP54-216ENST00000514901 KLHDC1Q8N7A1 406 aa11.31□□□□□ -0.6
NUP54-216ENST00000514901 DDB2Q92466 427 aa11.31□□□□□ -0.6
NUP54-216ENST00000514901 CITED1Q99966 193 aa11.31□□□□□ -0.6
NUP54-216ENST00000514901 CCL28Q9NRJ3 127 aa11.31□□□□□ -0.6
NUP54-216ENST00000514901 SH2D7A6NKC9 451 aaPredicted RBP11.3□□□□□ -0.6
NUP54-216ENST00000514901 LINC00473A8K010 186 aa11.3□□□□□ -0.6
NUP54-216ENST00000514901 RRHO14718 337 aa11.3□□□□□ -0.6
NUP54-216ENST00000514901 HLA-DRB1P01911 266 aa11.3□□□□□ -0.6
NUP54-216ENST00000514901 CD3DP04234 171 aa11.3□□□□□ -0.6
NUP54-216ENST00000514901 GNRHRP30968 328 aa11.3□□□□□ -0.6
NUP54-216ENST00000514901 ETV6P41212 452 aa11.3□□□□□ -0.6
NUP54-216ENST00000514901 KIR2DS2P43631 304 aa11.3□□□□□ -0.6
NUP54-216ENST00000514901 UCP3P55916 312 aa11.3□□□□□ -0.6
NUP54-216ENST00000514901 EIF4EBP1Q13541 118 aaPredicted RBP11.3□□□□□ -0.6
NUP54-216ENST00000514901 MEF2DQ14814 521 aa11.3□□□□□ -0.6
NUP54-216ENST00000514901 TMEM177Q53S58 311 aa11.3□□□□□ -0.6
NUP54-216ENST00000514901 KCTD9Q7L273 389 aa11.3□□□□□ -0.6
NUP54-216ENST00000514901 CENPVQ7Z7K6 275 aaPredicted RBP11.3□□□□□ -0.6
NUP54-216ENST00000514901 CCDC190Q86UF4 302 aa11.3□□□□□ -0.6
NUP54-216ENST00000514901 CMTM1Q8IZ96 169 aa11.3□□□□□ -0.6
NUP54-216ENST00000514901 MFSD4AQ8N468 514 aa11.3□□□□□ -0.6
NUP54-216ENST00000514901 BVESQ8NE79 360 aa11.3□□□□□ -0.6
NUP54-216ENST00000514901 OSR1Q8TAX0 266 aaPredicted RBP11.3□□□□□ -0.6
NUP54-216ENST00000514901 GON7Q9BXV9 100 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 98.8 ms