RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 OR5D18Q8NGL1 313 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 OR5D14Q8NGL3 314 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 OR4C13Q8NGP0 309 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 OR13C9Q8NGT0 318 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 OR13D1Q8NGV5 346 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 OR2G2Q8NGZ5 317 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 OR5AK2Q8NH90 309 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 ANGPTL6Q8NI99 470 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 NEK7Q8TDX7 302 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 RORBQ92753 470 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 C10orf35Q96D05 121 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 OPALINQ96PE5 141 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 SPAG8Q99932 426 aaPredicted RBP2.77□□□□□ -1.97
NUP54-212ENST00000513248 ST6GALNAC5Q9BVH7 336 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 PKIBQ9C010 78 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 CHST5Q9GZS9 411 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 FGF23Q9GZV9 251 aaPredicted RBP2.77□□□□□ -1.97
NUP54-212ENST00000513248 AMBNQ9NP70 447 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 RAB18Q9NP72 206 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 EXOSC4Q9NPD3 245 aaKnown RBP2.77□□□□□ -1.97
NUP54-212ENST00000513248 USE1Q9NZ43 259 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 VPREB3Q9UKI3 123 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 HHLA2Q9UM44 414 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 ING4Q9UNL4 249 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 GSTK1Q9Y2Q3 226 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 RPL36Q9Y3U8 105 aaKnown RBP2.77□□□□□ -1.97
NUP54-212ENST00000513248 MAB21L2Q9Y586 359 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 VPS13CQ709C8 3753 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 DCHS2Q6V1P9 2916 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 HRNRQ86YZ3 2850 aaPredicted RBP2.77□□□□□ -1.97
NUP54-212ENST00000513248 ARFGEF3Q5TH69 2177 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 ALPK2Q86TB3 2170 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 MAP1AP78559 2803 aaPredicted RBP2.77□□□□□ -1.97
NUP54-212ENST00000513248 TRGV10A0A0A0MS01 117 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 A0A1B0GTI1 187 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 CLPSL1A2RUU4 121 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 TMEM212A6NML5 194 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 RNASEK-C17orf49H0YIS7 233 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 H3BUX3 64 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP2.76□□□□□ -1.97
NUP54-212ENST00000513248 TOR1AO14656 332 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 MYL12BO14950 172 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 NOS1APO75052 506 aaPredicted RBP2.76□□□□□ -1.97
NUP54-212ENST00000513248 ZNF728P0DKX0 622 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 RAB3AP20336 220 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 CCL1P22362 96 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 TGFBR2P37173 567 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 KIR3DL2P43630 455 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 PRRX1P54821 245 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 SNRPGP62308 76 aaKnown RBP2.76□□□□□ -1.97
NUP54-212ENST00000513248 ZNF85Q03923 595 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 RAB40BQ12829 278 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 MRPL28Q13084 256 aaKnown RBP2.76□□□□□ -1.97
NUP54-212ENST00000513248 PDZK1IP1Q13113 114 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 RCN1Q15293 331 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 P2RY14Q15391 338 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 RSU1Q15404 277 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 UBE2V2Q15819 145 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 LTC4SQ16873 150 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 LRRC75BQ2VPJ9 315 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 NHLRC3Q5JS37 347 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 RNLSQ5VYX0 342 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 TTC23Q5W5X9 447 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 OR52W1Q6IF63 320 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 CALHM1Q8IU99 346 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 SERPINA12Q8IW75 414 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 STX19Q8N4C7 294 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 DHRSXQ8N5I4 330 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 CD177Q8N6Q3 437 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 Q8N7P7 452 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 TPRX1Q8N7U7 411 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 OR4D6Q8NGJ1 314 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 TYMSOSQ8TAI1 123 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 RPS4Y2Q8TD47 263 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 HAVCR2Q8TDQ0 301 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 TNFAIP8L1Q8WVP5 186 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 ADAT3Q96EY9 351 aaPredicted RBP2.76□□□□□ -1.97
NUP54-212ENST00000513248 SDSLQ96GA7 329 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 ZNF714Q96N38 554 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 SPACA5Q96QH8 159 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 NRIP2Q9BQI9 281 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 SLC5A7Q9GZV3 580 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 CHST6Q9GZX3 395 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 GAL3ST2Q9H3Q3 398 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 Q9HAA7 133 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 INPP5EQ9NRR6 644 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 C19orf12Q9NSK7 152 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 SMPD3Q9NY59 655 aaPredicted RBP2.76□□□□□ -1.97
NUP54-212ENST00000513248 ZNRD1Q9P1U0 126 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 CKLFQ9UBR5 152 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 MLXQ9UH92 298 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 PITPNC1Q9UKF7 332 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 FBXO7Q9Y3I1 522 aa2.76□□□□□ -1.97
NUP54-212ENST00000513248 DYSFO75923 2080 aa2.75□□□□□ -1.97
NUP54-212ENST00000513248 ABCA1O95477 2261 aa2.75□□□□□ -1.97
NUP54-212ENST00000513248 MEIKINA0A087WXM9 373 aa2.75□□□□□ -1.97
NUP54-212ENST00000513248 PNMA8CA0A1B0GUJ8 204 aa2.75□□□□□ -1.97
NUP54-212ENST00000513248 TEX48A0A1B0GUV7 120 aa2.75□□□□□ -1.97
NUP54-212ENST00000513248 H0YHG0 523 aa2.75□□□□□ -1.97
NUP54-212ENST00000513248 H0YJX3 145 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 106.1 ms