RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 MMP28Q9H239 520 aa3.59□□□□□ -1.83
NUP54-206ENST00000508465 NCOR1P1Q9H4R4 102 aa3.59□□□□□ -1.83
NUP54-206ENST00000508465 ZNF696Q9H7X3 374 aa3.59□□□□□ -1.83
NUP54-206ENST00000508465 PLGRKTQ9HBL7 147 aa3.59□□□□□ -1.83
NUP54-206ENST00000508465 TAF9BQ9HBM6 251 aa3.59□□□□□ -1.83
NUP54-206ENST00000508465 ISYNA1Q9NPH2 558 aa3.59□□□□□ -1.83
NUP54-206ENST00000508465 RCC2Q9P258 522 aaKnown RBP3.59□□□□□ -1.83
NUP54-206ENST00000508465 LINC00527Q9UJ94 153 aa3.59□□□□□ -1.83
NUP54-206ENST00000508465 RRP15Q9Y3B9 282 aaKnown RBP3.59□□□□□ -1.83
NUP54-206ENST00000508465 MGAM2Q2M2H8 2515 aa3.59□□□□□ -1.84
NUP54-206ENST00000508465 A0A1W2PPI3 338 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 NCBP2LA6PVI3 153 aaKnown RBP3.58□□□□□ -1.84
NUP54-206ENST00000508465 NPIPB5A8MRT5 1133 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 TMEM14DPA8MWL7 114 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 M0QZ24 198 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 RHODO00212 210 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 CCRL2O00421 344 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 SLC17A2O00624 439 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 UBE2CO00762 179 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 SPINT2O43291 252 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 DENRO43583 198 aaKnown RBP3.58□□□□□ -1.84
NUP54-206ENST00000508465 FAM106CPP0CH98 169 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 SLC2A2P11168 524 aaPredicted RBP3.58□□□□□ -1.84
NUP54-206ENST00000508465 ARSBP15848 533 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 TMEM11P17152 192 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 PSMB9P28065 219 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 CHATP28329 748 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 CEACAM3P40198 252 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 MNDAP41218 407 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 VDAC2P45880 294 aaPredicted RBP3.58□□□□□ -1.84
NUP54-206ENST00000508465 OR3A3P47888 321 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 KCNJ3P48549 501 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 VEGFCP49767 419 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 DYNLT3P51808 116 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 TMEM50BP56557 158 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 RPS27AP62979 156 aaKnown RBP3.58□□□□□ -1.84
NUP54-206ENST00000508465 HERPUD1Q15011 391 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 MRGPRG-AS1Q2M3A8 158 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 C22orf42Q6IC83 251 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 ACSM6Q6P461 480 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 SLC16A12Q6ZSM3 486 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 ZNF367Q7RTV3 350 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 LINC00596Q86U02 117 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 TMEM116Q8NCL8 245 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 OR5AU1Q8NGC0 362 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 KCNG3Q8TAE7 436 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 MRPL30Q8TCC3 161 aaKnown RBP3.58□□□□□ -1.84
NUP54-206ENST00000508465 IL1F10Q8WWZ1 152 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 THRSPQ92748 146 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 FAM3DQ96BQ1 224 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 ARHGAP5-AS1Q96IT6 56 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 RBM14Q96PK6 669 aaKnown RBP3.58□□□□□ -1.84
NUP54-206ENST00000508465 CITED2Q99967 270 aaPredicted RBP3.58□□□□□ -1.84
NUP54-206ENST00000508465 SLC25A33Q9BSK2 321 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 TMEM59Q9BXS4 323 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 PARP12Q9H0J9 701 aaKnown RBP3.58□□□□□ -1.84
NUP54-206ENST00000508465 CST11Q9H112 138 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 LPAR5Q9H1C0 372 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 OR51E2Q9H255 320 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 RNF167Q9H6Y7 350 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 SPACA1Q9HBV2 294 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 CHMP1AQ9HD42 196 aaPredicted RBP3.58□□□□□ -1.84
NUP54-206ENST00000508465 RAB18Q9NP72 206 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 OR2S2Q9NQN1 319 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 PLEKHJ1Q9NW61 149 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 KCNIP1Q9NZI2 227 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 GNG12Q9UBI6 72 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 PEMTQ9UBM1 199 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 GHRLQ9UBU3 117 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 AK3Q9UIJ7 227 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 PITPNC1Q9UKF7 332 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 RNF150Q9ULK6 438 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 LRRC42Q9Y546 428 aa3.58□□□□□ -1.84
NUP54-206ENST00000508465 A0A075B6Q4 140 aa3.57□□□□□ -1.84
NUP54-206ENST00000508465 TRAV1-2A0A0B4J238 106 aa3.57□□□□□ -1.84
NUP54-206ENST00000508465 IGHV1-3A0A0C4DH29 117 aa3.57□□□□□ -1.84
NUP54-206ENST00000508465 LOC100506127A0A0U1RQW1 187 aa3.57□□□□□ -1.84
NUP54-206ENST00000508465 TRDV1A0A1B0GX56 115 aa3.57□□□□□ -1.84
NUP54-206ENST00000508465 CTDSP2O14595 271 aa3.57□□□□□ -1.84
NUP54-206ENST00000508465 HSD17B6O14756 317 aa3.57□□□□□ -1.84
NUP54-206ENST00000508465 LDLRAD4O15165 306 aa3.57□□□□□ -1.84
NUP54-206ENST00000508465 ORC5O43913 435 aa3.57□□□□□ -1.84
NUP54-206ENST00000508465 ARL6IP5O75915 188 aa3.57□□□□□ -1.84
NUP54-206ENST00000508465 OR2F2O95006 317 aa3.57□□□□□ -1.84
NUP54-206ENST00000508465 IGKV1D-33P01593 117 aa3.57□□□□□ -1.84
NUP54-206ENST00000508465 IGKV1-33P01594 117 aa3.57□□□□□ -1.84
NUP54-206ENST00000508465 GAPDHP04406 335 aaKnown RBP3.57□□□□□ -1.84
NUP54-206ENST00000508465 GLAP06280 429 aa3.57□□□□□ -1.84
NUP54-206ENST00000508465 SCTP09683 121 aa3.57□□□□□ -1.84
NUP54-206ENST00000508465 CD3GP09693 182 aa3.57□□□□□ -1.84
NUP54-206ENST00000508465 UBBP0CG47 229 aa3.57□□□□□ -1.84
NUP54-206ENST00000508465 GNB3P16520 340 aa3.57□□□□□ -1.84
NUP54-206ENST00000508465 CEACAM6P40199 344 aa3.57□□□□□ -1.84
NUP54-206ENST00000508465 F2RL1P55085 397 aa3.57□□□□□ -1.84
NUP54-206ENST00000508465 KRTAP10-12P60413 245 aa3.57□□□□□ -1.84
NUP54-206ENST00000508465 DEFA6Q01524 100 aa3.57□□□□□ -1.84
NUP54-206ENST00000508465 PAX5Q02548 391 aa3.57□□□□□ -1.84
NUP54-206ENST00000508465 MXD1Q05195 221 aa3.57□□□□□ -1.84
NUP54-206ENST00000508465 TRAM1Q15629 374 aa3.57□□□□□ -1.84
NUP54-206ENST00000508465 NEDD8Q15843 81 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms