RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 FBXO7Q9Y3I1 522 aa9.9□□□□□ -0.82
PTPRF-214ENST00000496043 A0A075B6Q4 140 aa9.89□□□□□ -0.83
PTPRF-214ENST00000496043 TRBV6-7A0A0A0MS04 114 aa9.89□□□□□ -0.83
PTPRF-214ENST00000496043 RAB27BO00194 218 aa9.89□□□□□ -0.83
PTPRF-214ENST00000496043 SPDEFO95238 335 aa9.89□□□□□ -0.83
PTPRF-214ENST00000496043 DIRAS3O95661 229 aa9.89□□□□□ -0.83
PTPRF-214ENST00000496043 IGKV1-16P04430 117 aa9.89□□□□□ -0.83
PTPRF-214ENST00000496043 FCGR3AP08637 254 aa9.89□□□□□ -0.83
PTPRF-214ENST00000496043 HIST1H1DP16402 221 aaKnown RBP9.89□□□□□ -0.83
PTPRF-214ENST00000496043 LGALS7P47929 136 aa9.89□□□□□ -0.83
PTPRF-214ENST00000496043 LINC00205P59089 165 aa9.89□□□□□ -0.83
PTPRF-214ENST00000496043 GNB1P62873 340 aa9.89□□□□□ -0.83
PTPRF-214ENST00000496043 NDPQ00604 133 aa9.89□□□□□ -0.83
PTPRF-214ENST00000496043 TAGLNQ01995 201 aaKnown RBP9.89□□□□□ -0.83
PTPRF-214ENST00000496043 ARFRP1Q13795 201 aa9.89□□□□□ -0.83
PTPRF-214ENST00000496043 ARL6IP1Q15041 203 aa9.89□□□□□ -0.83
PTPRF-214ENST00000496043 SRSF7Q16629 238 aaKnown RBP eCLIP9.89□□□□□ -0.83
PTPRF-214ENST00000496043 ACTBL2Q562R1 376 aa9.89□□□□□ -0.83
PTPRF-214ENST00000496043 UBE2UQ5VVX9 321 aa9.89□□□□□ -0.83
PTPRF-214ENST00000496043 C22orf42Q6IC83 251 aa9.89□□□□□ -0.83
PTPRF-214ENST00000496043 PYHIN1Q6K0P9 492 aa9.89□□□□□ -0.83
PTPRF-214ENST00000496043 ATG5Q9H1Y0 275 aa9.89□□□□□ -0.83
PTPRF-214ENST00000496043 Q9H521 79 aa9.89□□□□□ -0.83
PTPRF-214ENST00000496043 SLC35D1Q9NTN3 355 aa9.89□□□□□ -0.83
PTPRF-214ENST00000496043 RBM7Q9Y580 266 aaKnown RBP9.89□□□□□ -0.83
PTPRF-214ENST00000496043 LINC01619G3V211 115 aa9.88□□□□□ -0.83
PTPRF-214ENST00000496043 MFNGO00587 321 aa9.88□□□□□ -0.83
PTPRF-214ENST00000496043 SOX15O60248 233 aa9.88□□□□□ -0.83
PTPRF-214ENST00000496043 ATP6V1G2O95670 118 aa9.88□□□□□ -0.83
PTPRF-214ENST00000496043 CA2P00918 260 aa9.88□□□□□ -0.83
PTPRF-214ENST00000496043 CBX3Q13185 183 aa9.88□□□□□ -0.83
PTPRF-214ENST00000496043 FXYD3Q14802 87 aa9.88□□□□□ -0.83
PTPRF-214ENST00000496043 CDNFQ49AH0 187 aa9.88□□□□□ -0.83
PTPRF-214ENST00000496043 ZNF429Q86V71 674 aa9.88□□□□□ -0.83
PTPRF-214ENST00000496043 SPARTQ8N0X7 666 aa9.88□□□□□ -0.83
PTPRF-214ENST00000496043 LFNGQ8NES3 379 aa9.88□□□□□ -0.83
PTPRF-214ENST00000496043 DCUN1D4Q92564 292 aa9.88□□□□□ -0.83
PTPRF-214ENST00000496043 MS4A10Q96PG2 267 aa9.88□□□□□ -0.83
PTPRF-214ENST00000496043 GINS4Q9BRT9 223 aa9.88□□□□□ -0.83
PTPRF-214ENST00000496043 FAM103A1Q9BTL3 118 aaKnown RBP9.88□□□□□ -0.83
PTPRF-214ENST00000496043 CABLES2Q9BTV7 478 aa9.88□□□□□ -0.83
PTPRF-214ENST00000496043 SDHAF2Q9NX18 166 aa9.88□□□□□ -0.83
PTPRF-214ENST00000496043 ZNF230Q9UIE0 474 aaPredicted RBP9.88□□□□□ -0.83
PTPRF-214ENST00000496043 A0A0B4J203 849 aa9.87□□□□□ -0.83
PTPRF-214ENST00000496043 OVOL1O14753 267 aa9.87□□□□□ -0.83
PTPRF-214ENST00000496043 SLC25A17O43808 307 aa9.87□□□□□ -0.83
PTPRF-214ENST00000496043 CNIH1O95406 144 aa9.87□□□□□ -0.83
PTPRF-214ENST00000496043 NHLRC4P0CG21 123 aaPredicted RBP9.87□□□□□ -0.83
PTPRF-214ENST00000496043 RRASP10301 218 aa9.87□□□□□ -0.83
PTPRF-214ENST00000496043 PSMB9P28065 219 aa9.87□□□□□ -0.83
PTPRF-214ENST00000496043 FGF9P31371 208 aaPredicted RBP9.87□□□□□ -0.83
PTPRF-214ENST00000496043 ASPHD1Q5U4P2 390 aa9.87□□□□□ -0.83
PTPRF-214ENST00000496043 Q6ZS49 121 aa9.87□□□□□ -0.83
PTPRF-214ENST00000496043 TPRA1Q86W33 373 aa9.87□□□□□ -0.83
PTPRF-214ENST00000496043 CASTOR1Q8WTX7 329 aa9.87□□□□□ -0.83
PTPRF-214ENST00000496043 MAFIPQ8WZ33 124 aa9.87□□□□□ -0.83
PTPRF-214ENST00000496043 FCGR1BQ92637 280 aa9.87□□□□□ -0.83
PTPRF-214ENST00000496043 RHOVQ96L33 236 aa9.87□□□□□ -0.83
PTPRF-214ENST00000496043 PRR25Q96S07 402 aa9.87□□□□□ -0.83
PTPRF-214ENST00000496043 ALX4Q9H161 411 aaPredicted RBP9.87□□□□□ -0.83
PTPRF-214ENST00000496043 OR2D2Q9H210 308 aa9.87□□□□□ -0.83
PTPRF-214ENST00000496043 SLA2Q9H6Q3 261 aa9.87□□□□□ -0.83
PTPRF-214ENST00000496043 TXNL4BQ9NX01 149 aaKnown RBP9.87□□□□□ -0.83
PTPRF-214ENST00000496043 SSR3Q9UNL2 185 aa9.87□□□□□ -0.83
PTPRF-214ENST00000496043 ZNF256Q9Y2P7 627 aaPredicted RBP9.87□□□□□ -0.83
PTPRF-214ENST00000496043 RRP15Q9Y3B9 282 aaKnown RBP9.87□□□□□ -0.83
PTPRF-214ENST00000496043 LSM4Q9Y4Z0 139 aaKnown RBP9.87□□□□□ -0.83
PTPRF-214ENST00000496043 NOTOA8MTQ0 251 aa9.86□□□□□ -0.83
PTPRF-214ENST00000496043 ARPC1BO15143 372 aaKnown RBP9.86□□□□□ -0.83
PTPRF-214ENST00000496043 HSPB1P04792 205 aaKnown RBP9.86□□□□□ -0.83
PTPRF-214ENST00000496043 LGALS1P09382 135 aaKnown RBP9.86□□□□□ -0.83
PTPRF-214ENST00000496043 RTL8BQ17RB0 113 aa9.86□□□□□ -0.83
PTPRF-214ENST00000496043 C11orf87Q6NUJ2 197 aa9.86□□□□□ -0.83
PTPRF-214ENST00000496043 NR2C2APQ86WQ0 139 aa9.86□□□□□ -0.83
PTPRF-214ENST00000496043 BVESQ8NE79 360 aa9.86□□□□□ -0.83
PTPRF-214ENST00000496043 ARPC1AQ92747 370 aa9.86□□□□□ -0.83
PTPRF-214ENST00000496043 DLX4Q92988 240 aaPredicted RBP9.86□□□□□ -0.83
PTPRF-214ENST00000496043 ADTRPQ96IZ2 230 aa9.86□□□□□ -0.83
PTPRF-214ENST00000496043 TMEM68Q96MH6 324 aa9.86□□□□□ -0.83
PTPRF-214ENST00000496043 ST6GALNAC5Q9BVH7 336 aa9.86□□□□□ -0.83
PTPRF-214ENST00000496043 TPSG1Q9NRR2 321 aa9.86□□□□□ -0.83
PTPRF-214ENST00000496043 ZNF355PQ9NSJ1 428 aa9.86□□□□□ -0.83
PTPRF-214ENST00000496043 STUB1Q9UNE7 303 aa9.86□□□□□ -0.83
PTPRF-214ENST00000496043 SHOXO15266 292 aa9.85□□□□□ -0.83
PTPRF-214ENST00000496043 LY86O95711 162 aa9.85□□□□□ -0.83
PTPRF-214ENST00000496043 IGLV2-23P01705 113 aa9.85□□□□□ -0.83
PTPRF-214ENST00000496043 IGHV3-11P01762 117 aa9.85□□□□□ -0.83
PTPRF-214ENST00000496043 TRGV3P03979 118 aa9.85□□□□□ -0.83
PTPRF-214ENST00000496043 CRYGBP07316 175 aa9.85□□□□□ -0.83
PTPRF-214ENST00000496043 CTXN2P0C2S0 81 aa9.85□□□□□ -0.83
PTPRF-214ENST00000496043 SNRPBP14678 240 aaKnown RBP9.85□□□□□ -0.83
PTPRF-214ENST00000496043 DTYMKP23919 212 aa9.85□□□□□ -0.83
PTPRF-214ENST00000496043 SLURP1P55000 103 aa9.85□□□□□ -0.83
PTPRF-214ENST00000496043 TPPP2P59282 170 aa9.85□□□□□ -0.83
PTPRF-214ENST00000496043 TMEM177Q53S58 311 aa9.85□□□□□ -0.83
PTPRF-214ENST00000496043 H1FOOQ8IZA3 346 aaPredicted RBP9.85□□□□□ -0.83
PTPRF-214ENST00000496043 OR5T1Q8NG75 326 aa9.85□□□□□ -0.83
PTPRF-214ENST00000496043 GRPEL2Q8TAA5 225 aa9.85□□□□□ -0.83
PTPRF-214ENST00000496043 DCSTAMPQ9H295 470 aa9.85□□□□□ -0.83
PTPRF-214ENST00000496043 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.85□□□□□ -0.833e-7■■■■■ 33.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms