RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, human

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP40-205	ENST00000486941	FAS	P25445	335 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	IL3RA	P26951	378 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	PSMB8	P28062	276 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	SSTR5	P35346	364 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	SOX6	P35712	828 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	POLR2I	P36954	125 aa	Known RBP	3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	GNG10	P50151	68 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	RUNX1	Q01196	453 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	ZNF616	Q08AN1	781 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	KIAA0141	Q14154	515 aa	Predicted RBP	3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	RSU1	Q15404	277 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	ATP6AP1	Q15904	470 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	LTC4S	Q16873	150 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	DNAL1	Q4LDG9	190 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	FAM27D1	Q5T7N8	215 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	ZNF691	Q5VV52	312 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	MEDAG	Q5VYS4	303 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941		Q75L30	129 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	SBSPON	Q8IVN8	264 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	FAM71E2	Q8N5Q1	922 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	ZNF491	Q8N8L2	437 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	CCDC197	Q8NCU1	140 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	TMEM104	Q8NE00	496 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	OR51A4	Q8NGJ6	313 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	OR1N2	Q8NGR9	330 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	OR13C3	Q8NGS6	347 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	OR10AC1	Q8NH08	325 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	PLPPR1	Q8TBJ4	325 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	MRGPRD	Q8TDS7	321 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	RTN4IP1	Q8WWV3	396 aa	Predicted RBP	3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	PELI1	Q96FA3	418 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	CPNE2	Q96FN4	548 aa	Predicted RBP	3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	UBE2E2	Q96LR5	201 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	RCHY1	Q96PM5	261 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	NR1H4	Q96RI1	486 aa	Predicted RBP	3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	MYCBP	Q99417	103 aa	Predicted RBP	3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	CIB1	Q99828	191 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	GABARAPL3	Q9BY60	117 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	RIBC2	Q9H4K1	309 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	VSIG4	Q9Y279	399 aa		3.03	□□□□□ -1.92
SNRNP40-205	ENST00000486941	DNAH7	Q8WXX0	4024 aa		3.03	□□□□□ -1.93
SNRNP40-205	ENST00000486941	RYR2	Q92736	4967 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	IGHV3-72	A0A0B4J1Y9	119 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	TRAV39	A0A0B4J263	110 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	TMEM30CP	A0ZSE6	113 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	TMEM212	A6NML5	194 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	SNTN	A6NMZ2	147 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	ZNF736	B4DX44	427 aa	Predicted RBP	3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	C15orf65	H3BRN8	121 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941		J3QLW9	94 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	SDCBP	O00560	298 aa	Predicted RBP	3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	OVOL1	O14753	267 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	MAGEB3	O15480	346 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	FRMD6-AS1	P0C7T7	363 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	GATA1	P15976	413 aa	Predicted RBP	3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	ZNF19	P17023	458 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	RAB3A	P20336	220 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	VHL	P40337	213 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	REG1B	P48304	166 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	RAB9A	P51151	201 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	ZNF137P	P52743	207 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	F2RL1	P55085	397 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	SNRPG	P62308	76 aa	Known RBP	3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	MRPL28	Q13084	256 aa	Known RBP	3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	PIGY	Q3MUY2	71 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	NHLRC3	Q5JS37	347 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	ADAMTSL4-AS1	Q5T5F5	129 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	SIGIRR	Q6IA17	410 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	SLC25A48	Q6ZT89	311 aa	Known RBP	3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	LINC00596	Q86U02	117 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	SYS1	Q8N2H4	156 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	ACBD7	Q8N6N7	88 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	SUMF2	Q8NBJ7	301 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	OR5AK2	Q8NH90	309 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	THAP6	Q8TBB0	222 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	TNFAIP8L1	Q8WVP5	186 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	DCUN1D4	Q92564	292 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	ARL11	Q969Q4	196 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	MRPL48	Q96GC5	212 aa	Known RBP	3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	KCTD7	Q96MP8	289 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	GPER1	Q99527	375 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	HSPB9	Q9BQS6	159 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	METTL9	Q9H1A3	318 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	OR51J1	Q9H342	316 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	PALMD	Q9NP74	551 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	RAB9B	Q9NP90	201 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	IL36G	Q9NZH8	169 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	ZNF107	Q9UII5	783 aa	Predicted RBP	3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	ST3GAL6	Q9Y274	331 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	EXOG	Q9Y2C4	368 aa	Known RBP	3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	AP4S1	Q9Y587	144 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	GMPPB	Q9Y5P6	360 aa		3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	HUWE1	Q7Z6Z7	4374 aa	Known RBP	3.02	□□□□□ -1.93
SNRNP40-205	ENST00000486941	TRAV41	A0A0B4J266	112 aa		3.01	□□□□□ -1.93
SNRNP40-205	ENST00000486941	GAGE10	A6NGK3	116 aa		3.01	□□□□□ -1.93
SNRNP40-205	ENST00000486941		A8MZ25	164 aa		3.01	□□□□□ -1.93
SNRNP40-205	ENST00000486941		G3V318	75 aa		3.01	□□□□□ -1.93
SNRNP40-205	ENST00000486941	GABRP	O00591	440 aa		3.01	□□□□□ -1.93
SNRNP40-205	ENST00000486941	GEMIN2	O14893	280 aa	Known RBP	3.01	□□□□□ -1.93
SNRNP40-205	ENST00000486941	ARPC1B	O15143	372 aa	Known RBP	3.01	□□□□□ -1.93

Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms