RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 PLGLAQ15195 96 aa12.24□□□□□ -0.45
HMGA1-206ENST00000478214 PSG5Q15238 335 aa12.24□□□□□ -0.45
HMGA1-206ENST00000478214 LCNL1Q6ZST4 164 aa12.24□□□□□ -0.45
HMGA1-206ENST00000478214 COMMD1Q8N668 190 aa12.24□□□□□ -0.45
HMGA1-206ENST00000478214 SNAPC3Q92966 411 aa12.24□□□□□ -0.45
HMGA1-206ENST00000478214 GON7Q9BXV9 100 aa12.24□□□□□ -0.45
HMGA1-206ENST00000478214 PARP11Q9NR21 331 aa12.24□□□□□ -0.45
HMGA1-206ENST00000478214 WSB1Q9Y6I7 421 aa12.24□□□□□ -0.45
HMGA1-206ENST00000478214 ATP6V0E1O15342 81 aa12.23□□□□□ -0.45
HMGA1-206ENST00000478214 TUSC2O75896 110 aa12.23□□□□□ -0.45
HMGA1-206ENST00000478214 APOA1P02647 267 aa12.23□□□□□ -0.45
HMGA1-206ENST00000478214 PF4V1P10720 104 aa12.23□□□□□ -0.45
HMGA1-206ENST00000478214 DUTP33316 252 aaKnown RBP12.23□□□□□ -0.45
HMGA1-206ENST00000478214 CBX5P45973 191 aa12.23□□□□□ -0.45
HMGA1-206ENST00000478214 THBS3P49746 956 aa12.23□□□□□ -0.45
HMGA1-206ENST00000478214 RPL23AP62750 156 aaKnown RBP12.23□□□□□ -0.45
HMGA1-206ENST00000478214 NDPQ00604 133 aa12.23□□□□□ -0.45
HMGA1-206ENST00000478214 CFHR3Q02985 330 aa12.23□□□□□ -0.45
HMGA1-206ENST00000478214 TEX38Q6PEX7 206 aa12.23□□□□□ -0.45
HMGA1-206ENST00000478214 C18orf65Q6ZTR6 163 aa12.23□□□□□ -0.45
HMGA1-206ENST00000478214 ZNF645Q8N7E2 425 aa12.23□□□□□ -0.45
HMGA1-206ENST00000478214 BVESQ8NE79 360 aa12.23□□□□□ -0.45
HMGA1-206ENST00000478214 ACOT12Q8WYK0 555 aa12.23□□□□□ -0.45
HMGA1-206ENST00000478214 FLYWCH2Q96CP2 140 aaKnown RBP12.23□□□□□ -0.45
HMGA1-206ENST00000478214 CLCC1Q96S66 551 aa12.23□□□□□ -0.45
HMGA1-206ENST00000478214 TSNAXQ99598 290 aaKnown RBP12.23□□□□□ -0.45
HMGA1-206ENST00000478214 METTL1Q9UBP6 276 aaKnown RBP12.23□□□□□ -0.45
HMGA1-206ENST00000478214 ZNF580Q9UK33 172 aa12.23□□□□□ -0.45
HMGA1-206ENST00000478214 NOTCH3Q9UM47 2321 aa12.23□□□□□ -0.45
HMGA1-206ENST00000478214 LINC00473A8K010 186 aa12.22□□□□□ -0.45
HMGA1-206ENST00000478214 G3V318 75 aa12.22□□□□□ -0.45
HMGA1-206ENST00000478214 HPGDSO60760 199 aa12.22□□□□□ -0.45
HMGA1-206ENST00000478214 RPLP1P05386 114 aaKnown RBP12.22□□□□□ -0.45
HMGA1-206ENST00000478214 ELK1P19419 428 aa12.22□□□□□ -0.45
HMGA1-206ENST00000478214 FCGR2CP31995 323 aa12.22□□□□□ -0.45
HMGA1-206ENST00000478214 CX3CL1P78423 397 aa12.22□□□□□ -0.45
HMGA1-206ENST00000478214 CLVS1Q8IUQ0 354 aaPredicted RBP12.22□□□□□ -0.45
HMGA1-206ENST00000478214 CMTM3Q96MX0 182 aa12.22□□□□□ -0.45
HMGA1-206ENST00000478214 IFT46Q9NQC8 304 aa12.22□□□□□ -0.45
HMGA1-206ENST00000478214 TPSG1Q9NRR2 321 aa12.22□□□□□ -0.45
HMGA1-206ENST00000478214 ZFP57Q9NU63 452 aa12.22□□□□□ -0.45
HMGA1-206ENST00000478214 MRPS7Q9Y2R9 242 aaKnown RBP12.22□□□□□ -0.45
HMGA1-206ENST00000478214 FBXO7Q9Y3I1 522 aa12.22□□□□□ -0.45
HMGA1-206ENST00000478214 SLC25A17O43808 307 aa12.21□□□□□ -0.45
HMGA1-206ENST00000478214 SPDEFO95238 335 aa12.21□□□□□ -0.45
HMGA1-206ENST00000478214 IGLV2-14P01704 120 aa12.21□□□□□ -0.45
HMGA1-206ENST00000478214 IGLV2-23P01705 113 aa12.21□□□□□ -0.45
HMGA1-206ENST00000478214 IGHG4P01861 327 aa12.21□□□□□ -0.45
HMGA1-206ENST00000478214 ELANEP08246 267 aa12.21□□□□□ -0.45
HMGA1-206ENST00000478214 OR5H8P0DN80 308 aa12.21□□□□□ -0.45
HMGA1-206ENST00000478214 ZNF182P17025 639 aaPredicted RBP12.21□□□□□ -0.45
HMGA1-206ENST00000478214 AADACP22760 399 aa12.21□□□□□ -0.45
HMGA1-206ENST00000478214 PRSS3P35030 304 aa12.21□□□□□ -0.45
HMGA1-206ENST00000478214 TAGLNQ01995 201 aaKnown RBP12.21□□□□□ -0.45
HMGA1-206ENST00000478214 FOXE3Q13461 319 aa12.21□□□□□ -0.45
HMGA1-206ENST00000478214 RTL8BQ17RB0 113 aa12.21□□□□□ -0.45
HMGA1-206ENST00000478214 CXorf66Q5JRM2 361 aaPredicted RBP12.21□□□□□ -0.45
HMGA1-206ENST00000478214 ZNF660Q6AZW8 331 aaPredicted RBP12.21□□□□□ -0.45
HMGA1-206ENST00000478214 C1QL4Q86Z23 238 aa12.21□□□□□ -0.45
HMGA1-206ENST00000478214 OR5AP2Q8NGF4 316 aa12.21□□□□□ -0.45
HMGA1-206ENST00000478214 DDB2Q92466 427 aa12.21□□□□□ -0.45
HMGA1-206ENST00000478214 ADTRPQ96IZ2 230 aa12.21□□□□□ -0.45
HMGA1-206ENST00000478214 HARBI1Q96MB7 349 aa12.21□□□□□ -0.45
HMGA1-206ENST00000478214 NECAP2Q9NVZ3 263 aa12.21□□□□□ -0.45
HMGA1-206ENST00000478214 ANAPC10Q9UM13 185 aa12.21□□□□□ -0.45
HMGA1-206ENST00000478214 RBMX2Q9Y388 322 aaKnown RBP12.21□□□□□ -0.45
HMGA1-206ENST00000478214 TRAV41A0A0B4J266 112 aa12.2□□□□□ -0.46
HMGA1-206ENST00000478214 SMIM31A0A1B0GVY4 71 aa12.2□□□□□ -0.46
HMGA1-206ENST00000478214 SRRM4A7MD48 611 aaKnown RBP12.2□□□□□ -0.46
HMGA1-206ENST00000478214 NUDT19A8MXV4 375 aa12.2□□□□□ -0.46
HMGA1-206ENST00000478214 SHOXO15266 292 aa12.2□□□□□ -0.46
HMGA1-206ENST00000478214 SLC22A5O76082 557 aa12.2□□□□□ -0.46
HMGA1-206ENST00000478214 CA2P00918 260 aa12.2□□□□□ -0.46
HMGA1-206ENST00000478214 PF4P02776 101 aa12.2□□□□□ -0.46
HMGA1-206ENST00000478214 RRASP10301 218 aa12.2□□□□□ -0.46
HMGA1-206ENST00000478214 PPIFP30405 207 aaKnown RBP12.2□□□□□ -0.46
HMGA1-206ENST00000478214 LGALS7P47929 136 aa12.2□□□□□ -0.46
HMGA1-206ENST00000478214 RPL30P62888 115 aaKnown RBP12.2□□□□□ -0.46
HMGA1-206ENST00000478214 DEFA6Q01524 100 aa12.2□□□□□ -0.46
HMGA1-206ENST00000478214 CBX3Q13185 183 aa12.2□□□□□ -0.46
HMGA1-206ENST00000478214 SPCS2Q15005 226 aa12.2□□□□□ -0.46
HMGA1-206ENST00000478214 TMEM177Q53S58 311 aa12.2□□□□□ -0.46
HMGA1-206ENST00000478214 MZT2AQ6P582 158 aa12.2□□□□□ -0.46
HMGA1-206ENST00000478214 C8orf86Q6ZUL3 223 aa12.2□□□□□ -0.46
HMGA1-206ENST00000478214 RNF152Q8N8N0 203 aa12.2□□□□□ -0.46
HMGA1-206ENST00000478214 KLHL30-AS1Q8NEE0 82 aa12.2□□□□□ -0.46
HMGA1-206ENST00000478214 ABHD5Q8WTS1 349 aa12.2□□□□□ -0.46
HMGA1-206ENST00000478214 AP3S1Q92572 193 aa12.2□□□□□ -0.46
HMGA1-206ENST00000478214 A3GALT2U3KPV4 340 aa12.2□□□□□ -0.46
HMGA1-206ENST00000478214 PLXNB1O43157 2135 aa12.2□□□□□ -0.46
HMGA1-206ENST00000478214 FAM25AB3EWG3 89 aa12.19□□□□□ -0.46
HMGA1-206ENST00000478214 FAM25CB3EWG5 89 aa12.19□□□□□ -0.46
HMGA1-206ENST00000478214 FAM25GB3EWG6 89 aa12.19□□□□□ -0.46
HMGA1-206ENST00000478214 G3V4G9 280 aa12.19□□□□□ -0.46
HMGA1-206ENST00000478214 CRYZL1O95825 349 aa12.19□□□□□ -0.46
HMGA1-206ENST00000478214 PPYP01298 95 aa12.19□□□□□ -0.46
HMGA1-206ENST00000478214 EGR2P11161 476 aaPredicted RBP12.19□□□□□ -0.46
HMGA1-206ENST00000478214 NAT1P18440 290 aa12.19□□□□□ -0.46
HMGA1-206ENST00000478214 PSMB8P28062 276 aa12.19□□□□□ -0.46
HMGA1-206ENST00000478214 RPL5P46777 297 aaKnown RBP12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms