RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 MIFP14174 115 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 M6PRP20645 277 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 GZMHP20718 246 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 C4BPBP20851 252 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 CALB2P22676 271 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 MTCP1P56278 107 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 MED21Q13503 144 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 ALKBH1Q13686 389 aaKnown RBP3.35□□□□□ -1.87
USP4-209ENST00000475873 GK3PQ14409 553 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 MED22Q15528 200 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 PIGYQ3MUY2 71 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 FAM98BQ52LJ0 330 aaKnown RBP3.35□□□□□ -1.87
USP4-209ENST00000475873 ZNF585BQ52M93 769 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 ZNF691Q5VV52 312 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 TMEM88Q6PEY1 159 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 RBPMS2Q6ZRY4 209 aaKnown RBP3.35□□□□□ -1.87
USP4-209ENST00000475873 FKBP9P1Q75LS8 142 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 IFT20Q8IY31 132 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 SLC38A6Q8IZM9 456 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 IQCF1Q8N6M8 205 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 OR2T12Q8NG77 320 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 OR9Q2Q8NGE9 314 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 OR8J3Q8NGG0 315 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 OR10AC1Q8NH08 325 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 GHSRQ92847 366 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 APOL4Q9BPW4 351 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 TSSK6Q9BXA6 273 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 C6orf62Q9GZU0 229 aaPredicted RBP3.35□□□□□ -1.87
USP4-209ENST00000475873 OR51V1Q9H2C8 321 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 IFI27L2Q9H2X8 130 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 RIBC2Q9H4K1 309 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 C5orf66Q9H5L9 145 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 RNF167Q9H6Y7 350 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 CMC2Q9NRP2 79 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 PGPEP1Q9NXJ5 209 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 GNG12Q9UBI6 72 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 OR52A1Q9UKL2 312 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 SAMD4AQ9UPU9 718 aaKnown RBP3.35□□□□□ -1.87
USP4-209ENST00000475873 AP3M1Q9Y2T2 418 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 IGHV3-35A0A0C4DH35 117 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 A0A1B0GW64 132 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 RAB19A4D1S5 217 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 MFSD2BA6NFX1 497 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 FAM223BA6NKX1 122 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 E9PI62 339 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 SLC22A1O15245 554 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 ORC5O43913 435 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 PROP1O75360 226 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 GMNNO75496 209 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 CIB2O75838 187 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 TUSC2O75896 110 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 IGLV2-23P01705 113 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 HBZP02008 142 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 MT-ND4P03905 459 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 P0C879 139 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 DNAH10OSP0CZ25 163 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 RAB4AP20338 218 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 SLC2A5P22732 501 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 ARL3P36405 182 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 PPP1CCP36873 323 aaKnown RBP3.34□□□□□ -1.87
USP4-209ENST00000475873 MAGEA2P43356 314 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 NUDT2P50583 147 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 CCR9P51686 369 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 FAM3BP58499 235 aaPredicted RBP3.34□□□□□ -1.87
USP4-209ENST00000475873 SF3A3Q12874 501 aaKnown RBP eCLIP3.34□□□□□ -1.87
USP4-209ENST00000475873 C15orf32Q32M92 178 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 ZNF829Q3KNS6 432 aaPredicted RBP3.34□□□□□ -1.87
USP4-209ENST00000475873 DNAL1Q4LDG9 190 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 MORN2Q502X0 79 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 RPL39P5Q59GN2 51 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 BCL2L15Q5TBC7 163 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 STEAP3Q658P3 488 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 MORN3Q6PF18 240 aaPredicted RBP3.34□□□□□ -1.87
USP4-209ENST00000475873 UTS2BQ765I0 119 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 CYP4Z1Q86W10 505 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 FAM223AQ8IWN6 122 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 ZNF679Q8IYX0 411 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 SUMF2Q8NBJ7 301 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 CSNK1G2-AS1Q8NCQ2 148 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 GNPDA2Q8TDQ7 276 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 ZNF414Q96IQ9 312 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 FAM210BQ96KR6 192 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 NICN1Q9BSH3 213 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 ABHD14AQ9BUJ0 271 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 DPCDQ9BVM2 203 aaPredicted RBP3.34□□□□□ -1.87
USP4-209ENST00000475873 Q9N2K0 584 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 FAM118AQ9NWS6 357 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 CMTM6Q9NX76 183 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 ZNF221Q9UK13 617 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 LINC00588Q9Y4M8 146 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 R4GMQ9 66 aa3.34□□□□□ -1.87
USP4-209ENST00000475873 TRAV34A0A0B4J273 112 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 A0A1B0GVG6 124 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 TMEM30CPA0ZSE6 113 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 CCDC182A6NF36 153 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 GATBO75879 557 aaKnown RBP3.33□□□□□ -1.88
USP4-209ENST00000475873 OR2J3O76001 311 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 SPDEFO95238 335 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 GADD45GO95257 159 aa3.33□□□□□ -1.88
USP4-209ENST00000475873 SEMG1P04279 462 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms