RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ECSCRQ19T08 205 aa10.93□□□□□ -0.66
UPF3A-204ENST00000475218 DEFB121Q5J5C9 76 aa10.93□□□□□ -0.66
UPF3A-204ENST00000475218 ZNF660Q6AZW8 331 aaPredicted RBP10.93□□□□□ -0.66
UPF3A-204ENST00000475218 Q6ZNX1 250 aa10.93□□□□□ -0.66
UPF3A-204ENST00000475218 OR5M8Q8NGP6 311 aa10.93□□□□□ -0.66
UPF3A-204ENST00000475218 ISOC1Q96CN7 298 aa10.93□□□□□ -0.66
UPF3A-204ENST00000475218 GHITMQ9H3K2 345 aa10.93□□□□□ -0.66
UPF3A-204ENST00000475218 KIAA1456Q9P272 454 aa10.93□□□□□ -0.66
UPF3A-204ENST00000475218 TRBV6-7A0A0A0MS04 114 aa10.93□□□□□ -0.66
UPF3A-204ENST00000475218 H7C2Y5 167 aa10.93□□□□□ -0.66
UPF3A-204ENST00000475218 FABP7O15540 132 aa10.93□□□□□ -0.66
UPF3A-204ENST00000475218 RAB3BP20337 219 aa10.93□□□□□ -0.66
UPF3A-204ENST00000475218 RAB6AP20340 208 aa10.93□□□□□ -0.66
UPF3A-204ENST00000475218 GALP22466 123 aa10.93□□□□□ -0.66
UPF3A-204ENST00000475218 LINC00299Q6ZSB3 139 aa10.93□□□□□ -0.66
UPF3A-204ENST00000475218 OR4A4PQ8NGN8 299 aa10.93□□□□□ -0.66
UPF3A-204ENST00000475218 DPF1Q92782 380 aa10.93□□□□□ -0.66
UPF3A-204ENST00000475218 FAM103A1Q9BTL3 118 aaKnown RBP10.93□□□□□ -0.66
UPF3A-204ENST00000475218 VSIG4Q9Y279 399 aa10.93□□□□□ -0.66
UPF3A-204ENST00000475218 KMT2CQ8NEZ4 4911 aaKnown RBP10.92□□□□□ -0.66
UPF3A-204ENST00000475218 A0A1W2PN81 502 aa10.92□□□□□ -0.66
UPF3A-204ENST00000475218 PDCD5O14737 125 aa10.92□□□□□ -0.66
UPF3A-204ENST00000475218 RBBP9O75884 186 aa10.92□□□□□ -0.66
UPF3A-204ENST00000475218 IGLV2-23P01705 113 aa10.92□□□□□ -0.66
UPF3A-204ENST00000475218 GSTP1P09211 210 aaKnown RBP10.92□□□□□ -0.66
UPF3A-204ENST00000475218 CHRNA7P36544 502 aa10.92□□□□□ -0.66
UPF3A-204ENST00000475218 DGCR2P98153 550 aa10.92□□□□□ -0.66
UPF3A-204ENST00000475218 CLVS1Q8IUQ0 354 aaPredicted RBP10.92□□□□□ -0.66
UPF3A-204ENST00000475218 OR1N2Q8NGR9 330 aa10.92□□□□□ -0.66
UPF3A-204ENST00000475218 CLCC1Q96S66 551 aa10.92□□□□□ -0.66
UPF3A-204ENST00000475218 RNF5Q99942 180 aa10.92□□□□□ -0.66
UPF3A-204ENST00000475218 TXNL4BQ9NX01 149 aaKnown RBP10.92□□□□□ -0.66
UPF3A-204ENST00000475218 METTL1Q9UBP6 276 aaKnown RBP10.92□□□□□ -0.66
UPF3A-204ENST00000475218 FOXA2Q9Y261 457 aaPredicted RBP10.92□□□□□ -0.66
UPF3A-204ENST00000475218 LSM4Q9Y4Z0 139 aaKnown RBP10.92□□□□□ -0.66
UPF3A-204ENST00000475218 A3GALT2U3KPV4 340 aa10.92□□□□□ -0.66
UPF3A-204ENST00000475218 TENM3Q9P273 2699 aa10.91□□□□□ -0.66
UPF3A-204ENST00000475218 SEC14L6B5MCN3 397 aa10.91□□□□□ -0.66
UPF3A-204ENST00000475218 M0R1X1 148 aa10.91□□□□□ -0.66
UPF3A-204ENST00000475218 ARPC1BO15143 372 aaKnown RBP10.91□□□□□ -0.66
UPF3A-204ENST00000475218 BET1O15155 118 aa10.91□□□□□ -0.66
UPF3A-204ENST00000475218 MRPS14O60783 128 aaKnown RBP10.91□□□□□ -0.66
UPF3A-204ENST00000475218 CA2P00918 260 aa10.91□□□□□ -0.66
UPF3A-204ENST00000475218 CRYGBP07316 175 aa10.91□□□□□ -0.66
UPF3A-204ENST00000475218 MYL9P24844 172 aa10.91□□□□□ -0.66
UPF3A-204ENST00000475218 FGF9P31371 208 aaPredicted RBP10.91□□□□□ -0.66
UPF3A-204ENST00000475218 TMBIM6P55061 237 aa10.91□□□□□ -0.66
UPF3A-204ENST00000475218 MRGPRG-AS1Q2M3A8 158 aa10.91□□□□□ -0.66
UPF3A-204ENST00000475218 TMEM65Q6PI78 240 aa10.91□□□□□ -0.66
UPF3A-204ENST00000475218 B9D2Q9BPU9 175 aa10.91□□□□□ -0.66
UPF3A-204ENST00000475218 SDHAF2Q9NX18 166 aa10.91□□□□□ -0.66
UPF3A-204ENST00000475218 ZNF221Q9UK13 617 aa10.91□□□□□ -0.66
UPF3A-204ENST00000475218 A0A075B6Q4 140 aa10.9□□□□□ -0.66
UPF3A-204ENST00000475218 OR8U9P0C7N5 309 aa10.9□□□□□ -0.66
UPF3A-204ENST00000475218 SERPINB10P48595 397 aa10.9□□□□□ -0.66
UPF3A-204ENST00000475218 ZNF616Q08AN1 781 aa10.9□□□□□ -0.66
UPF3A-204ENST00000475218 PJVKQ0ZLH3 352 aa10.9□□□□□ -0.66
UPF3A-204ENST00000475218 C9orf66Q5T8R8 295 aa10.9□□□□□ -0.66
UPF3A-204ENST00000475218 ZNF562Q6V9R5 426 aa10.9□□□□□ -0.66
UPF3A-204ENST00000475218 PPP1R27Q86WC6 154 aa10.9□□□□□ -0.66
UPF3A-204ENST00000475218 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.9□□□□□ -0.66
UPF3A-204ENST00000475218 PRR25Q96S07 402 aa10.9□□□□□ -0.66
UPF3A-204ENST00000475218 OR2D2Q9H210 308 aa10.9□□□□□ -0.66
UPF3A-204ENST00000475218 NBEAL2Q6ZNJ1 2754 aa10.9□□□□□ -0.66
UPF3A-204ENST00000475218 SLC25A17O43808 307 aa10.9□□□□□ -0.67
UPF3A-204ENST00000475218 SPDEFO95238 335 aa10.9□□□□□ -0.67
UPF3A-204ENST00000475218 Q6ZS49 121 aa10.9□□□□□ -0.67
UPF3A-204ENST00000475218 PDPNQ86YL7 162 aa10.9□□□□□ -0.67
UPF3A-204ENST00000475218 LFNGQ8NES3 379 aa10.9□□□□□ -0.67
UPF3A-204ENST00000475218 DCUN1D4Q92564 292 aa10.9□□□□□ -0.67
UPF3A-204ENST00000475218 BCL7BQ9BQE9 202 aa10.9□□□□□ -0.67
UPF3A-204ENST00000475218 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.9□□□□□ -0.67
UPF3A-204ENST00000475218 SRRM4A7MD48 611 aaKnown RBP10.89□□□□□ -0.67
UPF3A-204ENST00000475218 DIRAS3O95661 229 aa10.89□□□□□ -0.67
UPF3A-204ENST00000475218 HNRNPCP07910 306 aaKnown RBP eCLIP10.89□□□□□ -0.67
UPF3A-204ENST00000475218 OR8U8P0C7N1 319 aa10.89□□□□□ -0.67
UPF3A-204ENST00000475218 PSMB9P28065 219 aa10.89□□□□□ -0.67
UPF3A-204ENST00000475218 SLURP1P55000 103 aa10.89□□□□□ -0.67
UPF3A-204ENST00000475218 RPS16P62249 146 aaKnown RBP10.89□□□□□ -0.67
UPF3A-204ENST00000475218 PLGLAQ15195 96 aa10.89□□□□□ -0.67
UPF3A-204ENST00000475218 SRSF7Q16629 238 aaKnown RBP eCLIP10.89□□□□□ -0.67
UPF3A-204ENST00000475218 ZNF260Q3ZCT1 412 aa10.89□□□□□ -0.67
UPF3A-204ENST00000475218 AKIRIN2Q53H80 203 aa10.89□□□□□ -0.67
UPF3A-204ENST00000475218 ZNF773Q6PK81 442 aa10.89□□□□□ -0.67
UPF3A-204ENST00000475218 H1FOOQ8IZA3 346 aaPredicted RBP10.89□□□□□ -0.67
UPF3A-204ENST00000475218 DDB2Q92466 427 aa10.89□□□□□ -0.67
UPF3A-204ENST00000475218 DLX4Q92988 240 aaPredicted RBP10.89□□□□□ -0.67
UPF3A-204ENST00000475218 OR51E2Q9H255 320 aa10.89□□□□□ -0.67
UPF3A-204ENST00000475218 SLC35D1Q9NTN3 355 aa10.89□□□□□ -0.67
UPF3A-204ENST00000475218 IGHV4OR15-8A0A075B7B6 117 aa10.88□□□□□ -0.67
UPF3A-204ENST00000475218 A0A087WW49 117 aa10.88□□□□□ -0.67
UPF3A-204ENST00000475218 RAMP3O60896 148 aa10.88□□□□□ -0.67
UPF3A-204ENST00000475218 GADD45AP24522 165 aa10.88□□□□□ -0.67
UPF3A-204ENST00000475218 VAX1Q5SQQ9 334 aa10.88□□□□□ -0.67
UPF3A-204ENST00000475218 UNQ5815/PRO19632Q6UWF5 114 aa10.88□□□□□ -0.67
UPF3A-204ENST00000475218 TCTEX1D1Q8N7M0 179 aa10.88□□□□□ -0.67
UPF3A-204ENST00000475218 OR10J5Q8NHC4 309 aa10.88□□□□□ -0.67
UPF3A-204ENST00000475218 RAB2BQ8WUD1 216 aa10.88□□□□□ -0.67
UPF3A-204ENST00000475218 TSNAXQ99598 290 aaKnown RBP10.88□□□□□ -0.67
UPF3A-204ENST00000475218 RNF167Q9H6Y7 350 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms