RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 PTHLHP12272 177 aa11.2□□□□□ -0.62
VAMP4-203ENST00000474047 CXorf66Q5JRM2 361 aaPredicted RBP11.2□□□□□ -0.62
VAMP4-203ENST00000474047 HOGA1Q86XE5 327 aa11.2□□□□□ -0.62
VAMP4-203ENST00000474047 GVQW1Q8N7I0 195 aa11.2□□□□□ -0.62
VAMP4-203ENST00000474047 AP3S1Q92572 193 aa11.2□□□□□ -0.62
VAMP4-203ENST00000474047 ADTRPQ96IZ2 230 aa11.2□□□□□ -0.62
VAMP4-203ENST00000474047 CLCC1Q96S66 551 aa11.2□□□□□ -0.62
VAMP4-203ENST00000474047 OR51J1Q9H342 316 aa11.2□□□□□ -0.62
VAMP4-203ENST00000474047 ZFP57Q9NU63 452 aa11.2□□□□□ -0.62
VAMP4-203ENST00000474047 NECAP2Q9NVZ3 263 aa11.2□□□□□ -0.62
VAMP4-203ENST00000474047 METTL1Q9UBP6 276 aaKnown RBP11.2□□□□□ -0.62
VAMP4-203ENST00000474047 MRPS7Q9Y2R9 242 aaKnown RBP11.2□□□□□ -0.62
VAMP4-203ENST00000474047 GABARAPO95166 117 aa11.19□□□□□ -0.62
VAMP4-203ENST00000474047 IGKV1-16P04430 117 aa11.19□□□□□ -0.62
VAMP4-203ENST00000474047 RRASP10301 218 aa11.19□□□□□ -0.62
VAMP4-203ENST00000474047 TAS2R20P59543 309 aa11.19□□□□□ -0.62
VAMP4-203ENST00000474047 BVESQ8NE79 360 aa11.19□□□□□ -0.62
VAMP4-203ENST00000474047 WSB1Q9Y6I7 421 aa11.19□□□□□ -0.62
VAMP4-203ENST00000474047 FAM25AB3EWG3 89 aa11.18□□□□□ -0.62
VAMP4-203ENST00000474047 FAM25CB3EWG5 89 aa11.18□□□□□ -0.62
VAMP4-203ENST00000474047 FAM25GB3EWG6 89 aa11.18□□□□□ -0.62
VAMP4-203ENST00000474047 SHOXO15266 292 aa11.18□□□□□ -0.62
VAMP4-203ENST00000474047 TUSC2O75896 110 aa11.18□□□□□ -0.62
VAMP4-203ENST00000474047 IGF1P05019 195 aa11.18□□□□□ -0.62
VAMP4-203ENST00000474047 CD33P20138 364 aa11.18□□□□□ -0.62
VAMP4-203ENST00000474047 PRSS3P35030 304 aa11.18□□□□□ -0.62
VAMP4-203ENST00000474047 RPL23AP62750 156 aaKnown RBP11.18□□□□□ -0.62
VAMP4-203ENST00000474047 PSG5Q15238 335 aa11.18□□□□□ -0.62
VAMP4-203ENST00000474047 CTF1Q16619 201 aa11.18□□□□□ -0.62
VAMP4-203ENST00000474047 TMEM65Q6PI78 240 aa11.18□□□□□ -0.62
VAMP4-203ENST00000474047 ZNF645Q8N7E2 425 aa11.18□□□□□ -0.62
VAMP4-203ENST00000474047 CMTM3Q96MX0 182 aa11.18□□□□□ -0.62
VAMP4-203ENST00000474047 IGHV7-81A0A0B4J1V7 117 aa11.18□□□□□ -0.62
VAMP4-203ENST00000474047 ATP6V0E1O15342 81 aa11.18□□□□□ -0.62
VAMP4-203ENST00000474047 SPDEFO95238 335 aa11.18□□□□□ -0.62
VAMP4-203ENST00000474047 HLA-DQB1P01920 261 aa11.18□□□□□ -0.62
VAMP4-203ENST00000474047 APOA1P02647 267 aa11.18□□□□□ -0.62
VAMP4-203ENST00000474047 EIF4EP06730 217 aaKnown RBP11.18□□□□□ -0.62
VAMP4-203ENST00000474047 FCGR2CP31995 323 aa11.18□□□□□ -0.62
VAMP4-203ENST00000474047 LGALS7P47929 136 aa11.18□□□□□ -0.62
VAMP4-203ENST00000474047 ALDH3B2P48448 385 aa11.18□□□□□ -0.62
VAMP4-203ENST00000474047 FOXE3Q13461 319 aa11.18□□□□□ -0.62
VAMP4-203ENST00000474047 ZNF660Q6AZW8 331 aaPredicted RBP11.18□□□□□ -0.62
VAMP4-203ENST00000474047 HARBI1Q96MB7 349 aa11.18□□□□□ -0.62
VAMP4-203ENST00000474047 DCUN1D5Q9BTE7 237 aa11.18□□□□□ -0.62
VAMP4-203ENST00000474047 PRELID3BQ9Y3B1 194 aa11.18□□□□□ -0.62
VAMP4-203ENST00000474047 TRAV41A0A0B4J266 112 aa11.17□□□□□ -0.62
VAMP4-203ENST00000474047 SLC25A17O43808 307 aa11.17□□□□□ -0.62
VAMP4-203ENST00000474047 HPGDSO60760 199 aa11.17□□□□□ -0.62
VAMP4-203ENST00000474047 NOL3O60936 208 aaKnown RBP11.17□□□□□ -0.62
VAMP4-203ENST00000474047 CNIH1O95406 144 aa11.17□□□□□ -0.62
VAMP4-203ENST00000474047 ELANEP08246 267 aa11.17□□□□□ -0.62
VAMP4-203ENST00000474047 ZNF182P17025 639 aaPredicted RBP11.17□□□□□ -0.62
VAMP4-203ENST00000474047 DUTP33316 252 aaKnown RBP11.17□□□□□ -0.62
VAMP4-203ENST00000474047 CX3CL1P78423 397 aa11.17□□□□□ -0.62
VAMP4-203ENST00000474047 TMEM267Q0VDI3 215 aaPredicted RBP11.17□□□□□ -0.62
VAMP4-203ENST00000474047 ECSCRQ19T08 205 aa11.17□□□□□ -0.62
VAMP4-203ENST00000474047 C1QL4Q86Z23 238 aa11.17□□□□□ -0.62
VAMP4-203ENST00000474047 CLVS1Q8IUQ0 354 aaPredicted RBP11.17□□□□□ -0.62
VAMP4-203ENST00000474047 KLHL30-AS1Q8NEE0 82 aa11.17□□□□□ -0.62
VAMP4-203ENST00000474047 OR5AP2Q8NGF4 316 aa11.17□□□□□ -0.62
VAMP4-203ENST00000474047 A3GALT2U3KPV4 340 aa11.17□□□□□ -0.62
VAMP4-203ENST00000474047 G3V318 75 aa11.16□□□□□ -0.62
VAMP4-203ENST00000474047 FCN1O00602 326 aa11.16□□□□□ -0.62
VAMP4-203ENST00000474047 RPLP1P05386 114 aaKnown RBP11.16□□□□□ -0.62
VAMP4-203ENST00000474047 DEFA6Q01524 100 aa11.16□□□□□ -0.62
VAMP4-203ENST00000474047 CDK10Q15131 360 aa11.16□□□□□ -0.62
VAMP4-203ENST00000474047 ZNF695Q8IW36 515 aa11.16□□□□□ -0.62
VAMP4-203ENST00000474047 SECTM1Q8WVN6 248 aa11.16□□□□□ -0.62
VAMP4-203ENST00000474047 C5orf30Q96GV9 206 aa11.16□□□□□ -0.62
VAMP4-203ENST00000474047 ZNF580Q9UK33 172 aa11.16□□□□□ -0.62
VAMP4-203ENST00000474047 RBMX2Q9Y388 322 aaKnown RBP11.16□□□□□ -0.62
VAMP4-203ENST00000474047 TRRAPQ9Y4A5 3859 aa11.16□□□□□ -0.62
VAMP4-203ENST00000474047 IGKV1D-13A0A0B4J2D9 117 aa11.15□□□□□ -0.62
VAMP4-203ENST00000474047 CRYZL1O95825 349 aa11.15□□□□□ -0.62
VAMP4-203ENST00000474047 CA2P00918 260 aa11.15□□□□□ -0.62
VAMP4-203ENST00000474047 IGHG4P01861 327 aa11.15□□□□□ -0.62
VAMP4-203ENST00000474047 IGKV1-13P0DP09 117 aa11.15□□□□□ -0.62
VAMP4-203ENST00000474047 ELK1P19419 428 aa11.15□□□□□ -0.62
VAMP4-203ENST00000474047 AADACP22760 399 aa11.15□□□□□ -0.62
VAMP4-203ENST00000474047 SLC6A1P30531 599 aa11.15□□□□□ -0.62
VAMP4-203ENST00000474047 HERV-K104P61576 105 aa11.15□□□□□ -0.62
VAMP4-203ENST00000474047 GNB1P62873 340 aa11.15□□□□□ -0.62
VAMP4-203ENST00000474047 LCNL1Q6ZST4 164 aa11.15□□□□□ -0.62
VAMP4-203ENST00000474047 KCTD9Q7L273 389 aa11.15□□□□□ -0.62
VAMP4-203ENST00000474047 SNX29P2Q8IUI4 249 aa11.15□□□□□ -0.62
VAMP4-203ENST00000474047 HSD17B10Q99714 261 aaKnown RBP11.15□□□□□ -0.62
VAMP4-203ENST00000474047 EHFQ9NZC4 300 aa11.15□□□□□ -0.62
VAMP4-203ENST00000474047 LINC00473A8K010 186 aa11.15□□□□□ -0.63
VAMP4-203ENST00000474047 FCGR3BO75015 233 aa11.15□□□□□ -0.63
VAMP4-203ENST00000474047 CD40LGP29965 261 aa11.15□□□□□ -0.63
VAMP4-203ENST00000474047 RPL5P46777 297 aaKnown RBP11.15□□□□□ -0.63
VAMP4-203ENST00000474047 TAS2R46P59540 309 aa11.15□□□□□ -0.63
VAMP4-203ENST00000474047 FXYD4P59646 89 aa11.15□□□□□ -0.63
VAMP4-203ENST00000474047 VMA21Q3ZAQ7 101 aa11.15□□□□□ -0.63
VAMP4-203ENST00000474047 TMEM177Q53S58 311 aa11.15□□□□□ -0.63
VAMP4-203ENST00000474047 ZNF562Q6V9R5 426 aa11.15□□□□□ -0.63
VAMP4-203ENST00000474047 C8orf86Q6ZUL3 223 aa11.15□□□□□ -0.63
VAMP4-203ENST00000474047 PPP1R27Q86WC6 154 aa11.15□□□□□ -0.63
VAMP4-203ENST00000474047 OR5H2Q8NGV7 314 aa11.15□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms