RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 IZUMO2Q6UXV1 221 aa14.5□□□□□ -0.09
CCDC88B-206ENST00000473405 ZNF436-AS1Q8NC38 126 aaPredicted RBP14.5□□□□□ -0.09
CCDC88B-206ENST00000473405 LFNGQ8NES3 379 aa14.5□□□□□ -0.09
CCDC88B-206ENST00000473405 OR4A4PQ8NGN8 299 aa14.5□□□□□ -0.09
CCDC88B-206ENST00000473405 RAB3CQ96E17 227 aa14.5□□□□□ -0.09
CCDC88B-206ENST00000473405 TSNAXQ99598 290 aaKnown RBP14.5□□□□□ -0.09
CCDC88B-206ENST00000473405 CABLES2Q9BTV7 478 aa14.5□□□□□ -0.09
CCDC88B-206ENST00000473405 NDUFB11Q9NX14 153 aa14.5□□□□□ -0.09
CCDC88B-206ENST00000473405 RAB22AQ9UL26 194 aa14.5□□□□□ -0.09
CCDC88B-206ENST00000473405 U3KQK5 164 aa14.5□□□□□ -0.09
CCDC88B-206ENST00000473405 M0R1X1 148 aa14.49□□□□□ -0.09
CCDC88B-206ENST00000473405 ARPC1BO15143 372 aaKnown RBP14.49□□□□□ -0.09
CCDC88B-206ENST00000473405 FABP7O15540 132 aa14.49□□□□□ -0.09
CCDC88B-206ENST00000473405 SLC25A17O43808 307 aa14.49□□□□□ -0.09
CCDC88B-206ENST00000473405 IGHV3-11P01762 117 aa14.49□□□□□ -0.09
CCDC88B-206ENST00000473405 APOA2P02652 100 aa14.49□□□□□ -0.09
CCDC88B-206ENST00000473405 SERPINB10P48595 397 aa14.49□□□□□ -0.09
CCDC88B-206ENST00000473405 PSMD7P51665 324 aa14.49□□□□□ -0.09
CCDC88B-206ENST00000473405 IGSF11Q5DX21 431 aa14.49□□□□□ -0.09
CCDC88B-206ENST00000473405 ZNF367Q7RTV3 350 aa14.49□□□□□ -0.09
CCDC88B-206ENST00000473405 ARPC1AQ92747 370 aa14.49□□□□□ -0.09
CCDC88B-206ENST00000473405 C5orf30Q96GV9 206 aa14.49□□□□□ -0.09
CCDC88B-206ENST00000473405 MS4A10Q96PG2 267 aa14.49□□□□□ -0.09
CCDC88B-206ENST00000473405 OR2D2Q9H210 308 aa14.49□□□□□ -0.09
CCDC88B-206ENST00000473405 TRAV1-2A0A0B4J238 106 aa14.48□□□□□ -0.09
CCDC88B-206ENST00000473405 IFITM5A6NNB3 132 aa14.48□□□□□ -0.09
CCDC88B-206ENST00000473405 MFNGO00587 321 aa14.48□□□□□ -0.09
CCDC88B-206ENST00000473405 BET1O15155 118 aa14.48□□□□□ -0.09
CCDC88B-206ENST00000473405 SAP30O75446 220 aa14.48□□□□□ -0.09
CCDC88B-206ENST00000473405 LY86O95711 162 aa14.48□□□□□ -0.09
CCDC88B-206ENST00000473405 IGLV2-23P01705 113 aa14.48□□□□□ -0.09
CCDC88B-206ENST00000473405 TPPP2P59282 170 aa14.48□□□□□ -0.09
CCDC88B-206ENST00000473405 RPS16P62249 146 aaKnown RBP14.48□□□□□ -0.09
CCDC88B-206ENST00000473405 OR10R2Q8NGX6 335 aa14.48□□□□□ -0.09
CCDC88B-206ENST00000473405 GRPEL2Q8TAA5 225 aa14.48□□□□□ -0.09
CCDC88B-206ENST00000473405 MAFIPQ8WZ33 124 aa14.48□□□□□ -0.09
CCDC88B-206ENST00000473405 CNBD2Q96M20 576 aa14.48□□□□□ -0.09
CCDC88B-206ENST00000473405 ASCL2Q99929 193 aa14.48□□□□□ -0.09
CCDC88B-206ENST00000473405 TRBV6-7A0A0A0MS04 114 aa14.47□□□□□ -0.09
CCDC88B-206ENST00000473405 A0A0B4J203 849 aa14.47□□□□□ -0.09
CCDC88B-206ENST00000473405 RAB27BO00194 218 aa14.47□□□□□ -0.09
CCDC88B-206ENST00000473405 DIRAS3O95661 229 aa14.47□□□□□ -0.09
CCDC88B-206ENST00000473405 GSTT2P0CG29 244 aa14.47□□□□□ -0.09
CCDC88B-206ENST00000473405 GSTT2BP0CG30 244 aa14.47□□□□□ -0.09
CCDC88B-206ENST00000473405 GNB3P16520 340 aa14.47□□□□□ -0.09
CCDC88B-206ENST00000473405 RANBP1P43487 201 aa14.47□□□□□ -0.09
CCDC88B-206ENST00000473405 HSPA13P48723 471 aa14.47□□□□□ -0.09
CCDC88B-206ENST00000473405 PJVKQ0ZLH3 352 aa14.47□□□□□ -0.09
CCDC88B-206ENST00000473405 ACSM6Q6P461 480 aa14.47□□□□□ -0.09
CCDC88B-206ENST00000473405 NR2C2APQ86WQ0 139 aa14.47□□□□□ -0.09
CCDC88B-206ENST00000473405 FLYWCH2Q96CP2 140 aaKnown RBP14.47□□□□□ -0.09
CCDC88B-206ENST00000473405 RHOVQ96L33 236 aa14.47□□□□□ -0.09
CCDC88B-206ENST00000473405 VCX3BQ9H321 246 aa14.47□□□□□ -0.09
CCDC88B-206ENST00000473405 SLA2Q9H6Q3 261 aa14.47□□□□□ -0.09
CCDC88B-206ENST00000473405 SLC35D1Q9NTN3 355 aa14.47□□□□□ -0.09
CCDC88B-206ENST00000473405 SDHAF2Q9NX18 166 aa14.47□□□□□ -0.09
CCDC88B-206ENST00000473405 ZNF230Q9UIE0 474 aaPredicted RBP14.47□□□□□ -0.09
CCDC88B-206ENST00000473405 TNCP24821 2201 aa14.47□□□□□ -0.09
CCDC88B-206ENST00000473405 PDCD5O14737 125 aa14.46□□□□□ -0.09
CCDC88B-206ENST00000473405 CRYGBP07316 175 aa14.46□□□□□ -0.09
CCDC88B-206ENST00000473405 OR8U9P0C7N5 309 aa14.46□□□□□ -0.09
CCDC88B-206ENST00000473405 HIST1H1DP16402 221 aaKnown RBP14.46□□□□□ -0.09
CCDC88B-206ENST00000473405 MRPS15P82914 257 aaKnown RBP14.46□□□□□ -0.09
CCDC88B-206ENST00000473405 FXYD3Q14802 87 aa14.46□□□□□ -0.09
CCDC88B-206ENST00000473405 OR10J5Q8NHC4 309 aa14.46□□□□□ -0.09
CCDC88B-206ENST00000473405 BLOC1S6Q9UL45 172 aa14.46□□□□□ -0.09
CCDC88B-206ENST00000473405 SMAD5-AS1Q9Y6J3 95 aa14.46□□□□□ -0.09
CCDC88B-206ENST00000473405 TENM2Q9NT68 2774 aa14.45□□□□□ -0.1
CCDC88B-206ENST00000473405 A0A075B6Q4 140 aa14.45□□□□□ -0.1
CCDC88B-206ENST00000473405 TRDV1A0A1B0GX56 115 aa14.45□□□□□ -0.1
CCDC88B-206ENST00000473405 HSPB1P04792 205 aaKnown RBP14.45□□□□□ -0.1
CCDC88B-206ENST00000473405 SPNP16150 400 aa14.45□□□□□ -0.1
CCDC88B-206ENST00000473405 RAB6AP20340 208 aa14.45□□□□□ -0.1
CCDC88B-206ENST00000473405 TRGV3P03979 118 aa14.44□□□□□ -0.1
CCDC88B-206ENST00000473405 RAB3BP20337 219 aa14.44□□□□□ -0.1
CCDC88B-206ENST00000473405 GADD45AP24522 165 aa14.44□□□□□ -0.1
CCDC88B-206ENST00000473405 MYL9P24844 172 aa14.44□□□□□ -0.1
CCDC88B-206ENST00000473405 MRGPRG-AS1Q2M3A8 158 aa14.44□□□□□ -0.1
CCDC88B-206ENST00000473405 POC5Q8NA72 575 aa14.44□□□□□ -0.1
CCDC88B-206ENST00000473405 HARBI1Q96MB7 349 aa14.44□□□□□ -0.1
CCDC88B-206ENST00000473405 LYSTQ99698 3801 aa14.44□□□□□ -0.1
CCDC88B-206ENST00000473405 DYNC2H1Q8NCM8 4307 aaKnown RBP14.44□□□□□ -0.1
CCDC88B-206ENST00000473405 IGKV1D-8A0A087WSZ0 117 aa14.43□□□□□ -0.1
CCDC88B-206ENST00000473405 SRRM4A7MD48 611 aaKnown RBP14.43□□□□□ -0.1
CCDC88B-206ENST00000473405 ATP6V1G2O95670 118 aa14.43□□□□□ -0.1
CCDC88B-206ENST00000473405 CD40LGP29965 261 aa14.43□□□□□ -0.1
CCDC88B-206ENST00000473405 LGALS7P47929 136 aa14.43□□□□□ -0.1
CCDC88B-206ENST00000473405 TMEM177Q53S58 311 aa14.43□□□□□ -0.1
CCDC88B-206ENST00000473405 C22orf42Q6IC83 251 aa14.43□□□□□ -0.1
CCDC88B-206ENST00000473405 Q6ZS49 121 aa14.43□□□□□ -0.1
CCDC88B-206ENST00000473405 OR5T1Q8NG75 326 aa14.43□□□□□ -0.1
CCDC88B-206ENST00000473405 DDB2Q92466 427 aa14.43□□□□□ -0.1
CCDC88B-206ENST00000473405 ELF5Q9UKW6 265 aaPredicted RBP14.43□□□□□ -0.1
CCDC88B-206ENST00000473405 SMIM30A4D0T7 59 aa14.42□□□□□ -0.1
CCDC88B-206ENST00000473405 H3BUA1 57 aa14.42□□□□□ -0.1
CCDC88B-206ENST00000473405 CNIH1O95406 144 aa14.42□□□□□ -0.1
CCDC88B-206ENST00000473405 GP9P14770 177 aa14.42□□□□□ -0.1
CCDC88B-206ENST00000473405 GALP22466 123 aa14.42□□□□□ -0.1
CCDC88B-206ENST00000473405 PITPNAQ00169 270 aa14.42□□□□□ -0.1
CCDC88B-206ENST00000473405 SRSF7Q16629 238 aaKnown RBP eCLIP14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms