RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 IFT140Q96RY7 1462 aa0.13□□□□□ -2.39
UBXN4-207ENST00000471246 SAMD9Q5K651 1589 aa0.13□□□□□ -2.39
UBXN4-207ENST00000471246 RP1P56715 2156 aa0.13□□□□□ -2.39
UBXN4-207ENST00000471246 FREM3P0C091 2139 aa0.13□□□□□ -2.39
UBXN4-207ENST00000471246 ESPL1Q14674 2120 aa0.13□□□□□ -2.39
UBXN4-207ENST00000471246 CHD3Q12873 2000 aaKnown RBP0.13□□□□□ -2.39
UBXN4-207ENST00000471246 FANCMQ8IYD8 2048 aa0.13□□□□□ -2.39
UBXN4-207ENST00000471246 LRRIQ1Q96JM4 1722 aa0.13□□□□□ -2.39
UBXN4-207ENST00000471246 TNS1Q9HBL0 1735 aaKnown RBP0.13□□□□□ -2.39
UBXN4-207ENST00000471246 NRXN3Q9Y4C0 1643 aa0.13□□□□□ -2.39
UBXN4-207ENST00000471246 HFM1A2PYH4 1435 aa0.13□□□□□ -2.39
UBXN4-207ENST00000471246 SOGA1O94964 1423 aa0.13□□□□□ -2.39
UBXN4-207ENST00000471246 NCOA3Q9Y6Q9 1424 aa0.13□□□□□ -2.39
UBXN4-207ENST00000471246 ZFC3H1O60293 1989 aaKnown RBP0.12□□□□□ -2.39
UBXN4-207ENST00000471246 C3P01024 1663 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 PBRM1Q86U86 1689 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 ADGBQ8N7X0 1667 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 A2ML1A8K2U0 1454 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 AQRO60306 1485 aaKnown RBP eCLIP0.12□□□□□ -2.399e-10■■■■■ 41.2
UBXN4-207ENST00000471246 NKTRP30414 1462 aaKnown RBP0.12□□□□□ -2.39
UBXN4-207ENST00000471246 NCAPD3P42695 1498 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 MYOM2P54296 1465 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 ASCC3Q8N3C0 2202 aaKnown RBP0.12□□□□□ -2.39
UBXN4-207ENST00000471246 UNC13CQ8NB66 2214 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 IGKV2-40A0A087WW87 121 aaPredicted RBP0.12□□□□□ -2.39
UBXN4-207ENST00000471246 IGHV3-15A0A0B4J1V0 119 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 IGKV3D-7A0A0C4DH55 119 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 IGKV3OR2-268A0A0C4DH90 116 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 DHRS12A0PJE2 317 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 ANKRD20A5PA0PJZ0 165 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 TVP23AA6NH52 213 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 RNASEK-C17orf49H0YIS7 233 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 TMEM250H0YL14 139 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 J3QLI3 93 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 CASQ2O14958 399 aaPredicted RBP0.12□□□□□ -2.39
UBXN4-207ENST00000471246 IGKV2D-40P01614 121 aaPredicted RBP0.12□□□□□ -2.39
UBXN4-207ENST00000471246 FGF4P08620 206 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 IGHV3-30-3P0DP02 117 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 CCL5P13501 91 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 IL9P15248 144 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 ZNF3P17036 446 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 GALP22466 123 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 TUBG1P23258 451 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 PYCR1P32322 319 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 GTF2H1P32780 548 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 CD200P41217 278 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 MT4P47944 62 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 GCLMP48507 274 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 TTPAP49638 278 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 PSMC5P62195 406 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 DMTNQ08495 405 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 LRRC74AQ0VAA2 488 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 UAP1Q16222 522 aaPredicted RBP0.12□□□□□ -2.39
UBXN4-207ENST00000471246 AGTRAPQ6RW13 159 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 CLEC2AQ6UVW9 174 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 UNQ6190/PRO20217Q6UXQ8 127 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 FAM19A3Q7Z5A8 133 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 C3orf56Q8N813 242 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 SUN5Q8TC36 379 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 DOK4Q8TEW6 326 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 FAM131CQ96AQ9 280 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 SMR3AQ99954 134 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 APOL4Q9BPW4 351 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 ZNF426Q9BUY5 554 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 ZNF471Q9BX82 626 aaPredicted RBP0.12□□□□□ -2.39
UBXN4-207ENST00000471246 C1QTNF6Q9BXI9 259 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 CRLF2Q9HC73 371 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 ACOT13Q9NPJ3 140 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 LZTFL1Q9NQ48 299 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 TUBG2Q9NRH3 451 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 DDX18Q9NVP1 670 aaKnown RBP0.12□□□□□ -2.39
UBXN4-207ENST00000471246 PSMD13Q9UNM6 376 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 POMPQ9Y244 141 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 TBL2Q9Y4P3 447 aaKnown RBP0.12□□□□□ -2.39
UBXN4-207ENST00000471246 PUS1Q9Y606 427 aaKnown RBP eCLIP0.12□□□□□ -2.39
UBXN4-207ENST00000471246 KPTNQ9Y664 436 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 ATAD5Q96QE3 1844 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 UBR1Q8IWV7 1749 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 SIPA1L2Q9P2F8 1722 aaPredicted RBP0.12□□□□□ -2.39
UBXN4-207ENST00000471246 WDR97A6NE52 1622 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 PHRF1Q9P1Y6 1649 aaKnown RBP0.12□□□□□ -2.39
UBXN4-207ENST00000471246 EFCAB5A4FU69 1503 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 PRDM15P57071 1507 aaPredicted RBP0.12□□□□□ -2.39
UBXN4-207ENST00000471246 ZFYVE16Q7Z3T8 1539 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 DUOX2Q9NRD8 1548 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 UGGT2Q9NYU1 1516 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 ARHGEF12Q9NZN5 1544 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 KDM6AO15550 1401 aaPredicted RBP0.12□□□□□ -2.39
UBXN4-207ENST00000471246 CNTLNQ9NXG0 1405 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 KIAA1107Q9UPP5 1409 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 TRPM7Q96QT4 1865 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 PTPRJQ12913 1337 aa0.12□□□□□ -2.39
UBXN4-207ENST00000471246 DNAJC13O75165 2243 aa0.11□□□□□ -2.39
UBXN4-207ENST00000471246 KIF21AQ7Z4S6 1674 aa0.11□□□□□ -2.39
UBXN4-207ENST00000471246 DSCAMO60469 2012 aa0.11□□□□□ -2.39
UBXN4-207ENST00000471246 MAST1Q9Y2H9 1570 aa0.11□□□□□ -2.39
UBXN4-207ENST00000471246 CCDC88BA6NC98 1476 aa0.11□□□□□ -2.39
UBXN4-207ENST00000471246 SLX4Q8IY92 1834 aa0.11□□□□□ -2.39
UBXN4-207ENST00000471246 NSD2O96028 1365 aa0.11□□□□□ -2.39
UBXN4-207ENST00000471246 TNIKQ9UKE5 1360 aa0.11□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms