RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 hCG_1818297A0A087WSY0 165 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 LOC102724200A0A096LPH7 203 aaPredicted RBP3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 TRAV5A0A0B4J249 113 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 A0A0G2JRQ6 117 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 OR4C45A6NMZ5 311 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 A8MT66 165 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 H3BP45 60 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 OVOL1O14753 267 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 HLA-DRB1P01911 266 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 GYPCP04921 128 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 CRYBA1P05813 215 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 ERGP11308 486 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 ATP5G3P48201 142 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 KLK7P49862 253 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 CAV1Q03135 178 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 SLC38A11Q08AI6 406 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 MMDQ15546 238 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 LPAL2Q16609 132 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 TMEM241Q24JQ0 296 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 Q499Y3 187 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 LRRC10Q5BKY1 277 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 PYY3Q5JQD4 70 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 WDR38Q5JTN6 314 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 Q5XG85 94 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 Q6ZRU5 148 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 ZNF571Q7Z3V5 609 aaPredicted RBP3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 VN1R4Q7Z5H5 301 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 C6orf223Q8N319 242 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 DCAF4L2Q8NA75 395 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 OR52R1Q8NGF1 315 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 OR10J6PQ8NGY7 276 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 LRRC29Q8WV35 223 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 SLAMF6Q96DU3 332 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 GALNT14Q96FL9 552 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 SIGLEC12Q96PQ1 595 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 DERL3Q96Q80 235 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 SPACA5Q96QH8 159 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 SELENOIQ9C0D9 397 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 Q9H521 79 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 XCL2Q9UBD3 114 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 LAMTOR3Q9UHA4 124 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 NAV1Q8NEY1 1877 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 ZNF608Q9ULD9 1512 aaPredicted RBP3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 NFASCO94856 1347 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 HECW2Q9P2P5 1572 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 IGHV4-61A0A0C4DH41 118 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 SPAARA0A1B0GVQ0 90 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 PGPA6NDG6 321 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 K7EPK0 472 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 UPK2O00526 184 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 UBFD1O14562 309 aaKnown RBP3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 FFAR1O14842 300 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 CXorf1O96002 111 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 IGHV4-39P01824 125 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 IGHV4-59P01825 116 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 APODP05090 189 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 ADRA2AP08913 450 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 UCHL1P09936 223 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 OR4Q2P0C623 313 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 CT45A10P0DMU9 189 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 ATP6V0CP27449 155 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 CD70P32970 193 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 PPP1CCP36873 323 aaKnown RBP3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 PSMB2P49721 201 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 RPS23P62266 143 aaKnown RBP3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 GNB1P62873 340 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 FAM222AQ5U5X8 452 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 TMEM236Q5W0B7 351 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 UFSP1Q6NVU6 142 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 WDR59Q6PJI9 974 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 SBSNQ6UWP8 590 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 FBXW12Q6X9E4 464 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 GTSCR1Q86UQ5 136 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 LY6G5BQ8NDX9 201 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 OR11G2Q8NGC1 345 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 PP6455Q8WZ26 134 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 C11orf52Q96A22 123 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 SLC35E1Q96K37 410 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 CARD19Q96LW7 228 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 GTSF1LQ9H1H1 148 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 TMEM133Q9H2Q1 129 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 HEBP1Q9NRV9 189 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 KCNIP2Q9NS61 270 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 MED9Q9NWA0 146 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 TMEM216Q9P0N5 145 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 SIGLEC7Q9Y286 467 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 NEUROG3Q9Y4Z2 214 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 INSIG2Q9Y5U4 225 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 PXMP4Q9Y6I8 212 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 OVOS2A0A0G2JMS6 1433 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 PLCH2O75038 1416 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 CLIP1P30622 1438 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 DCCP43146 1447 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 EEA1Q15075 1411 aa3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 RRBP1Q9P2E9 1410 aaKnown RBP3.67□□□□□ -1.82
CCDC88A-210ENST00000468534 MYH3P11055 1940 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 KDM5DQ9BY66 1539 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 TRBV19A0A075B6N1 114 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 TRAV4A0A0B4J268 109 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 IGHV3-20A0A0C4DH32 117 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms