RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 CLDN14O95500 239 aa7.45□□□□□ -1.22
SYNE1-217ENST00000466159 IGKV1D-33P01593 117 aa7.45□□□□□ -1.22
SYNE1-217ENST00000466159 IGKV1-33P01594 117 aa7.45□□□□□ -1.22
SYNE1-217ENST00000466159 MEOX2P50222 304 aa7.45□□□□□ -1.22
SYNE1-217ENST00000466159 RAB11AP62491 216 aa7.45□□□□□ -1.22
SYNE1-217ENST00000466159 NCR3LG1Q68D85 454 aa7.45□□□□□ -1.22
SYNE1-217ENST00000466159 IGF2-ASQ6U949 168 aa7.45□□□□□ -1.22
SYNE1-217ENST00000466159 GCSAMQ8N6F7 178 aa7.45□□□□□ -1.22
SYNE1-217ENST00000466159 ZNRF1Q8ND25 227 aa7.45□□□□□ -1.22
SYNE1-217ENST00000466159 DTD1Q8TEA8 209 aa7.45□□□□□ -1.22
SYNE1-217ENST00000466159 MUCL1Q96DR8 90 aa7.45□□□□□ -1.22
SYNE1-217ENST00000466159 YPEL4Q96NS1 127 aa7.45□□□□□ -1.22
SYNE1-217ENST00000466159 OR2V2Q96R30 315 aa7.45□□□□□ -1.22
SYNE1-217ENST00000466159 NIPSNAP3BQ9BS92 247 aa7.45□□□□□ -1.22
SYNE1-217ENST00000466159 FAM215AQ9Y5M1 114 aa7.45□□□□□ -1.22
SYNE1-217ENST00000466159 ZNF292O60281 2723 aa7.45□□□□□ -1.22
SYNE1-217ENST00000466159 MAP1BP46821 2468 aaKnown RBP7.44□□□□□ -1.22
SYNE1-217ENST00000466159 C5orf52A6NGY3 159 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 PMS2P5A8MQ11 134 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 K7EM74 188 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 S100A6P06703 90 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 BCL2P10415 239 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 TMEM41BQ5BJD5 291 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 FAM201AQ5SY85 155 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 ZNF343Q6P1L6 599 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 MOGAT3Q86VF5 341 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 RPP25LQ8N5L8 163 aaKnown RBP7.44□□□□□ -1.22
SYNE1-217ENST00000466159 FAM169BQ8N8A8 192 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 TVP23CQ96ET8 276 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 HSD17B10Q99714 261 aaKnown RBP7.44□□□□□ -1.22
SYNE1-217ENST00000466159 DSCAMO60469 2012 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 CEP250Q9BV73 2442 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 BSNQ9UPA5 3926 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 MAP1LC3B2A6NCE7 125 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 MARCH11A6NNE9 402 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 RAB29O14966 203 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 HMGB3O15347 200 aaKnown RBP7.44□□□□□ -1.22
SYNE1-217ENST00000466159 SPRY3O43610 288 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 IFNA4P05014 189 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 ADH4P08319 380 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 HTD2P86397 168 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 MZT1Q08AG7 82 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 FAM90A2PQ658T7 463 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 ACSM6Q6P461 480 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 ZNF66Q6ZN08 573 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 C1orf174Q8IYL3 243 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 PARD6GQ9BYG4 376 aaPredicted RBP7.44□□□□□ -1.22
SYNE1-217ENST00000466159 MAP1LC3BQ9GZQ8 125 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 FAM234AQ9H0X4 552 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 CISD1Q9NZ45 108 aaKnown RBP7.44□□□□□ -1.22
SYNE1-217ENST00000466159 GNG12Q9UBI6 72 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 URGCP-MRPS24S4R325 110 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 ATMQ13315 3056 aa7.44□□□□□ -1.22
SYNE1-217ENST00000466159 PLCE1Q9P212 2302 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 TM4SF5O14894 197 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 CRYAAP02489 173 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 GZMHP20718 246 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 MAS1LP35410 378 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 GPR12P47775 334 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 ZNF134P52741 427 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 EDDM3BP56851 147 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 PAX5Q02548 391 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 MORN2Q502X0 79 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 TIMM23BQ5SRD1 257 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 UTF1Q5T230 341 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 IGFL3Q6UXB1 125 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 HEPN1Q6WQI6 88 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 C22orf34Q6ZV56 151 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 CA5BP1Q8WTZ4 195 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 PINX1Q96BK5 328 aaKnown RBP7.43□□□□□ -1.22
SYNE1-217ENST00000466159 WASF3Q9UPY6 502 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 CEBPZOSA8MTT3 80 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 FCGR3BO75015 233 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 OR9G9P0C7N8 305 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 SELLP14151 372 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 DUTP33316 252 aaKnown RBP7.43□□□□□ -1.22
SYNE1-217ENST00000466159 TLE1Q04724 770 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 TFF3Q07654 80 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 RPL39P5Q59GN2 51 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 TRAT1Q6PIZ9 186 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 SSX9Q7RTT3 188 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 OR10P1Q8NGE3 313 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 OR10G4Q8NGN3 311 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 R3HDM4Q96D70 268 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 MALSU1Q96EH3 234 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 MEGF10Q96KG7 1140 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 SNX22Q96L94 193 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 QTRT1Q9BXR0 403 aaKnown RBP7.43□□□□□ -1.22
SYNE1-217ENST00000466159 SLC39A9Q9NUM3 307 aa7.43□□□□□ -1.22
SYNE1-217ENST00000466159 ZFHX2Q9C0A1 2572 aaPredicted RBP7.42□□□□□ -1.22
SYNE1-217ENST00000466159 A0A087WWC5 75 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 MGST3O14880 152 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 CXCL1P09341 107 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 FGF7P21781 194 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 GLRXP35754 106 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 RPS10P46783 165 aaKnown RBP7.42□□□□□ -1.22
SYNE1-217ENST00000466159 KLF3P57682 345 aaPredicted RBP7.42□□□□□ -1.22
SYNE1-217ENST00000466159 LOXL3P58215 753 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 ERVFRD-1P60508 538 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 NKX6-1P78426 367 aaPredicted RBP7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms