RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 NDUFB6O95139 128 aa12.69□□□□□ -0.38
USP40-206ENST00000443711 APOA2P02652 100 aa12.69□□□□□ -0.38
USP40-206ENST00000443711 FAM106CPP0CH98 169 aa12.69□□□□□ -0.38
USP40-206ENST00000443711 BTCP35070 178 aa12.69□□□□□ -0.38
USP40-206ENST00000443711 RAB13P51153 203 aa12.69□□□□□ -0.38
USP40-206ENST00000443711 RND3P61587 244 aa12.69□□□□□ -0.38
USP40-206ENST00000443711 CATR1Q13166 79 aa12.69□□□□□ -0.38
USP40-206ENST00000443711 EIF4EBP1Q13541 118 aaPredicted RBP12.69□□□□□ -0.38
USP40-206ENST00000443711 PHLDA2Q53GA4 152 aa12.69□□□□□ -0.38
USP40-206ENST00000443711 GLDNQ6ZMI3 551 aaPredicted RBP12.69□□□□□ -0.38
USP40-206ENST00000443711 ZDHHC22Q8N966 263 aa12.69□□□□□ -0.38
USP40-206ENST00000443711 CCDC71LQ8N9Z2 235 aa12.69□□□□□ -0.38
USP40-206ENST00000443711 ZNF383Q8NA42 475 aa12.69□□□□□ -0.38
USP40-206ENST00000443711 POC5Q8NA72 575 aa12.69□□□□□ -0.38
USP40-206ENST00000443711 OR5AN1Q8NGI8 311 aa12.69□□□□□ -0.38
USP40-206ENST00000443711 OR5R1Q8NH85 324 aa12.69□□□□□ -0.38
USP40-206ENST00000443711 CAPSLQ8WWF8 208 aa12.69□□□□□ -0.38
USP40-206ENST00000443711 PRELID3BQ9Y3B1 194 aa12.69□□□□□ -0.38
USP40-206ENST00000443711 FAM240BA0A1B0GVZ2 78 aa12.68□□□□□ -0.38
USP40-206ENST00000443711 FAM90A9PA6NNJ1 464 aa12.68□□□□□ -0.38
USP40-206ENST00000443711 LINC00473A8K010 186 aa12.68□□□□□ -0.38
USP40-206ENST00000443711 H0YJW9 148 aa12.68□□□□□ -0.38
USP40-206ENST00000443711 H3BUX3 64 aa12.68□□□□□ -0.38
USP40-206ENST00000443711 H7C2Y5 167 aa12.68□□□□□ -0.38
USP40-206ENST00000443711 VENTXO95231 258 aa12.68□□□□□ -0.38
USP40-206ENST00000443711 SNRNP70P08621 437 aaKnown RBP12.68□□□□□ -0.38
USP40-206ENST00000443711 RRASP10301 218 aa12.68□□□□□ -0.38
USP40-206ENST00000443711 PI3P19957 117 aa12.68□□□□□ -0.38
USP40-206ENST00000443711 SLC6A1P30531 599 aa12.68□□□□□ -0.38
USP40-206ENST00000443711 PIGPP57054 158 aa12.68□□□□□ -0.38
USP40-206ENST00000443711 LINC00205P59089 165 aa12.68□□□□□ -0.38
USP40-206ENST00000443711 RPL30P62888 115 aaKnown RBP12.68□□□□□ -0.38
USP40-206ENST00000443711 DCTN2Q13561 401 aaKnown RBP12.68□□□□□ -0.38
USP40-206ENST00000443711 KCTD9Q7L273 389 aa12.68□□□□□ -0.38
USP40-206ENST00000443711 TMEM86BQ8N661 226 aa12.68□□□□□ -0.38
USP40-206ENST00000443711 PIFOQ8TCI5 191 aa12.68□□□□□ -0.38
USP40-206ENST00000443711 TCTEX1D2Q8WW35 142 aa12.68□□□□□ -0.38
USP40-206ENST00000443711 RTBDNQ9BSG5 229 aaPredicted RBP12.68□□□□□ -0.38
USP40-206ENST00000443711 SLC2A9Q9NRM0 540 aa12.68□□□□□ -0.38
USP40-206ENST00000443711 SLC35D1Q9NTN3 355 aa12.68□□□□□ -0.38
USP40-206ENST00000443711 COPZ2Q9P299 210 aa12.68□□□□□ -0.38
USP40-206ENST00000443711 PITPNC1Q9UKF7 332 aa12.68□□□□□ -0.38
USP40-206ENST00000443711 VSIG4Q9Y279 399 aa12.68□□□□□ -0.38
USP40-206ENST00000443711 WASHC3Q9Y3C0 194 aa12.68□□□□□ -0.38
USP40-206ENST00000443711 POMT1Q9Y6A1 747 aa12.68□□□□□ -0.38
USP40-206ENST00000443711 HOXA3O43365 443 aaPredicted RBP12.67□□□□□ -0.38
USP40-206ENST00000443711 IGHV4-59P01825 116 aa12.67□□□□□ -0.38
USP40-206ENST00000443711 CD24P25063 80 aa12.67□□□□□ -0.38
USP40-206ENST00000443711 KIR2DS2P43631 304 aa12.67□□□□□ -0.38
USP40-206ENST00000443711 CBX3Q13185 183 aa12.67□□□□□ -0.38
USP40-206ENST00000443711 EBI3Q14213 229 aa12.67□□□□□ -0.38
USP40-206ENST00000443711 HES1Q14469 280 aa12.67□□□□□ -0.38
USP40-206ENST00000443711 RTL8BQ17RB0 113 aa12.67□□□□□ -0.38
USP40-206ENST00000443711 TBC1D26Q86UD7 250 aa12.67□□□□□ -0.38
USP40-206ENST00000443711 OR2T10Q8NGZ9 312 aa12.67□□□□□ -0.38
USP40-206ENST00000443711 OR51H1Q8NH63 302 aa12.67□□□□□ -0.38
USP40-206ENST00000443711 DDB2Q92466 427 aa12.67□□□□□ -0.38
USP40-206ENST00000443711 JMJD8Q96S16 334 aa12.67□□□□□ -0.38
USP40-206ENST00000443711 GPHA2Q96T91 129 aa12.67□□□□□ -0.38
USP40-206ENST00000443711 C5orf66Q9H5L9 145 aa12.67□□□□□ -0.38
USP40-206ENST00000443711 A0A0A6YYJ9 748 aa12.66□□□□□ -0.38
USP40-206ENST00000443711 MPPED1O15442 326 aa12.66□□□□□ -0.38
USP40-206ENST00000443711 MOSP00540 346 aa12.66□□□□□ -0.38
USP40-206ENST00000443711 IGKV1D-33P01593 117 aa12.66□□□□□ -0.38
USP40-206ENST00000443711 IGKV1-33P01594 117 aa12.66□□□□□ -0.38
USP40-206ENST00000443711 TCRBP04435 133 aa12.66□□□□□ -0.38
USP40-206ENST00000443711 RLN1P04808 185 aa12.66□□□□□ -0.38
USP40-206ENST00000443711 F2RP25116 425 aa12.66□□□□□ -0.38
USP40-206ENST00000443711 PDPNQ86YL7 162 aa12.66□□□□□ -0.38
USP40-206ENST00000443711 TCTEX1D1Q8N7M0 179 aa12.66□□□□□ -0.38
USP40-206ENST00000443711 ENKURQ8TC29 256 aa12.66□□□□□ -0.38
USP40-206ENST00000443711 TCF19Q9Y242 345 aa12.66□□□□□ -0.38
USP40-206ENST00000443711 TEX13DA0A0J9YY54 714 aaPredicted RBP12.65□□□□□ -0.38
USP40-206ENST00000443711 A6NDX4 124 aa12.65□□□□□ -0.38
USP40-206ENST00000443711 FCGR3BO75015 233 aa12.65□□□□□ -0.38
USP40-206ENST00000443711 IFNA2P01563 188 aa12.65□□□□□ -0.38
USP40-206ENST00000443711 TMEM11P17152 192 aa12.65□□□□□ -0.38
USP40-206ENST00000443711 AKR1C4P17516 323 aa12.65□□□□□ -0.38
USP40-206ENST00000443711 HILS1P60008 231 aa12.65□□□□□ -0.38
USP40-206ENST00000443711 LY6EQ16553 131 aa12.65□□□□□ -0.38
USP40-206ENST00000443711 DHRS7BQ6IAN0 325 aaPredicted RBP12.65□□□□□ -0.38
USP40-206ENST00000443711 C11orf88Q6PI97 169 aa12.65□□□□□ -0.38
USP40-206ENST00000443711 TMED4Q7Z7H5 227 aa12.65□□□□□ -0.38
USP40-206ENST00000443711 SPAG16Q8N0X2 631 aa12.65□□□□□ -0.38
USP40-206ENST00000443711 CENPSQ8N2Z9 138 aa12.65□□□□□ -0.38
USP40-206ENST00000443711 CD300LFQ8TDQ1 290 aa12.65□□□□□ -0.38
USP40-206ENST00000443711 FLYWCH2Q96CP2 140 aaKnown RBP12.65□□□□□ -0.38
USP40-206ENST00000443711 EAF1Q96JC9 268 aaPredicted RBP12.65□□□□□ -0.38
USP40-206ENST00000443711 RNF5Q99942 180 aa12.65□□□□□ -0.38
USP40-206ENST00000443711 TNFRSF19Q9NS68 423 aa12.65□□□□□ -0.38
USP40-206ENST00000443711 LIN7CQ9NUP9 197 aaKnown RBP12.65□□□□□ -0.38
USP40-206ENST00000443711 DNAJC9-AS1A6NH13 148 aa12.64□□□□□ -0.39
USP40-206ENST00000443711 RBFOX2O43251 390 aaKnown RBP eCLIP12.64□□□□□ -0.39
USP40-206ENST00000443711 TCF21O43680 179 aa12.64□□□□□ -0.39
USP40-206ENST00000443711 TAS2R31P59538 309 aa12.64□□□□□ -0.39
USP40-206ENST00000443711 HNF4GQ14541 408 aa12.64□□□□□ -0.39
USP40-206ENST00000443711 SLC9A3R2Q15599 337 aa12.64□□□□□ -0.39
USP40-206ENST00000443711 OR2B11Q5JQS5 317 aa12.64□□□□□ -0.39
USP40-206ENST00000443711 LIAT1Q6ZQX7 453 aa12.64□□□□□ -0.39
USP40-206ENST00000443711 SGPP2Q8IWX5 399 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms