RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 TSPAN15O95858 294 aa14.73□□□□□ -0.05
SHH-203ENST00000435425 IGKV1-16P04430 117 aa14.73□□□□□ -0.05
SHH-203ENST00000435425 CSF1P09603 554 aa14.73□□□□□ -0.05
SHH-203ENST00000435425 RFX2P48378 723 aa14.73□□□□□ -0.05
SHH-203ENST00000435425 FXYD4P59646 89 aa14.73□□□□□ -0.05
SHH-203ENST00000435425 C5orf64Q2M2E5 130 aa14.73□□□□□ -0.05
SHH-203ENST00000435425 PRR31Q5SQ13 230 aa14.73□□□□□ -0.05
SHH-203ENST00000435425 LIN54Q6MZP7 749 aa14.73□□□□□ -0.05
SHH-203ENST00000435425 PDPNQ86YL7 162 aa14.73□□□□□ -0.05
SHH-203ENST00000435425 LAX1Q8IWV1 398 aa14.73□□□□□ -0.05
SHH-203ENST00000435425 OR5H2Q8NGV7 314 aa14.73□□□□□ -0.05
SHH-203ENST00000435425 GPX8Q8TED1 209 aa14.73□□□□□ -0.05
SHH-203ENST00000435425 CHPT1Q8WUD6 406 aa14.73□□□□□ -0.05
SHH-203ENST00000435425 SECTM1Q8WVN6 248 aa14.73□□□□□ -0.05
SHH-203ENST00000435425 FLYWCH2Q96CP2 140 aaKnown RBP14.73□□□□□ -0.05
SHH-203ENST00000435425 CLCC1Q96S66 551 aa14.73□□□□□ -0.05
SHH-203ENST00000435425 CCDC59Q9P031 241 aaKnown RBP14.73□□□□□ -0.05
SHH-203ENST00000435425 TCRBV4S1A1TA0A5B7 111 aa14.72□□□□□ -0.05
SHH-203ENST00000435425 LINC00473A8K010 186 aa14.72□□□□□ -0.05
SHH-203ENST00000435425 AP4M1O00189 453 aa14.72□□□□□ -0.05
SHH-203ENST00000435425 RRHO14718 337 aa14.72□□□□□ -0.05
SHH-203ENST00000435425 KCNAB3O43448 404 aa14.72□□□□□ -0.05
SHH-203ENST00000435425 NDUFA3O95167 84 aa14.72□□□□□ -0.05
SHH-203ENST00000435425 PPYP01298 95 aa14.72□□□□□ -0.05
SHH-203ENST00000435425 HLA-DMAP28067 261 aa14.72□□□□□ -0.05
SHH-203ENST00000435425 DUTP33316 252 aaKnown RBP14.72□□□□□ -0.05
SHH-203ENST00000435425 CBX3Q13185 183 aa14.72□□□□□ -0.05
SHH-203ENST00000435425 C2orf68Q2NKX9 166 aa14.72□□□□□ -0.05
SHH-203ENST00000435425 KHDC1LQ5JSQ8 128 aa14.72□□□□□ -0.05
SHH-203ENST00000435425 TREML4Q6UXN2 200 aa14.72□□□□□ -0.05
SHH-203ENST00000435425 STPG2Q8N412 459 aa14.72□□□□□ -0.05
SHH-203ENST00000435425 OR4X2Q8NGF9 303 aa14.72□□□□□ -0.05
SHH-203ENST00000435425 FAM110DQ8TAY7 271 aaPredicted RBP14.72□□□□□ -0.05
SHH-203ENST00000435425 C6orf62Q9GZU0 229 aaPredicted RBP14.72□□□□□ -0.05
SHH-203ENST00000435425 SCPEP1Q9HB40 452 aa14.72□□□□□ -0.05
SHH-203ENST00000435425 CCL28Q9NRJ3 127 aa14.72□□□□□ -0.05
SHH-203ENST00000435425 METTL1Q9UBP6 276 aaKnown RBP14.72□□□□□ -0.05
SHH-203ENST00000435425 ADAM30Q9UKF2 790 aa14.72□□□□□ -0.05
SHH-203ENST00000435425 ANAPC10Q9UM13 185 aa14.72□□□□□ -0.05
SHH-203ENST00000435425 RBMX2Q9Y388 322 aaKnown RBP14.72□□□□□ -0.05
SHH-203ENST00000435425 SLC22A5O76082 557 aa14.71□□□□□ -0.05
SHH-203ENST00000435425 NAT1P18440 290 aa14.71□□□□□ -0.05
SHH-203ENST00000435425 SLC35B1P78383 322 aa14.71□□□□□ -0.05
SHH-203ENST00000435425 PSG5Q15238 335 aa14.71□□□□□ -0.05
SHH-203ENST00000435425 RTL8BQ17RB0 113 aa14.71□□□□□ -0.05
SHH-203ENST00000435425 OR2B11Q5JQS5 317 aa14.71□□□□□ -0.05
SHH-203ENST00000435425 TCTEX1D4Q5JR98 221 aa14.71□□□□□ -0.05
SHH-203ENST00000435425 ADTRPQ96IZ2 230 aa14.71□□□□□ -0.05
SHH-203ENST00000435425 TSNAXQ99598 290 aaKnown RBP14.71□□□□□ -0.05
SHH-203ENST00000435425 RNF5Q99942 180 aa14.71□□□□□ -0.05
SHH-203ENST00000435425 SLC5A7Q9GZV3 580 aa14.71□□□□□ -0.05
SHH-203ENST00000435425 PARP11Q9NR21 331 aa14.71□□□□□ -0.05
SHH-203ENST00000435425 FCN1O00602 326 aa14.7□□□□□ -0.06
SHH-203ENST00000435425 IGLV2-14P01704 120 aa14.7□□□□□ -0.06
SHH-203ENST00000435425 HLA-DRB1P01911 266 aa14.7□□□□□ -0.06
SHH-203ENST00000435425 TAS2R46P59540 309 aa14.7□□□□□ -0.06
SHH-203ENST00000435425 HERV-K104P61576 105 aa14.7□□□□□ -0.06
SHH-203ENST00000435425 CD83Q01151 205 aa14.7□□□□□ -0.06
SHH-203ENST00000435425 TMEM17Q86X19 198 aa14.7□□□□□ -0.06
SHH-203ENST00000435425 LYSMD2Q8IV50 215 aa14.7□□□□□ -0.06
SHH-203ENST00000435425 GIMAP1Q8WWP7 306 aa14.7□□□□□ -0.06
SHH-203ENST00000435425 GPHA2Q96T91 129 aa14.7□□□□□ -0.06
SHH-203ENST00000435425 DCUN1D5Q9BTE7 237 aa14.7□□□□□ -0.06
SHH-203ENST00000435425 TAS2R8Q9NYW2 309 aa14.7□□□□□ -0.06
SHH-203ENST00000435425 IGHV7-81A0A0B4J1V7 117 aa14.69□□□□□ -0.06
SHH-203ENST00000435425 SULT1C2O00338 296 aa14.69□□□□□ -0.06
SHH-203ENST00000435425 SHOXO15266 292 aa14.69□□□□□ -0.06
SHH-203ENST00000435425 TNFSF12O43508 249 aa14.69□□□□□ -0.06
SHH-203ENST00000435425 SLC25A17O43808 307 aa14.69□□□□□ -0.06
SHH-203ENST00000435425 FCGR3BO75015 233 aa14.69□□□□□ -0.06
SHH-203ENST00000435425 CRYZL1O95825 349 aa14.69□□□□□ -0.06
SHH-203ENST00000435425 RRASP10301 218 aa14.69□□□□□ -0.06
SHH-203ENST00000435425 VDAC1P21796 283 aa14.69□□□□□ -0.06
SHH-203ENST00000435425 RCVRNP35243 200 aa14.69□□□□□ -0.06
SHH-203ENST00000435425 HRH1P35367 487 aa14.69□□□□□ -0.06
SHH-203ENST00000435425 RPL30P62888 115 aaKnown RBP14.69□□□□□ -0.06
SHH-203ENST00000435425 TAGLNQ01995 201 aaKnown RBP14.69□□□□□ -0.06
SHH-203ENST00000435425 DYRK1AQ13627 763 aa14.69□□□□□ -0.06
SHH-203ENST00000435425 KCTD9Q7L273 389 aa14.69□□□□□ -0.06
SHH-203ENST00000435425 NDUFA11Q86Y39 141 aa14.69□□□□□ -0.06
SHH-203ENST00000435425 OR52I2Q8NH67 350 aa14.69□□□□□ -0.06
SHH-203ENST00000435425 MCFD2Q8NI22 146 aa14.69□□□□□ -0.06
SHH-203ENST00000435425 ABHD5Q8WTS1 349 aa14.69□□□□□ -0.06
SHH-203ENST00000435425 TCTEX1D2Q8WW35 142 aa14.69□□□□□ -0.06
SHH-203ENST00000435425 DDB2Q92466 427 aa14.69□□□□□ -0.06
SHH-203ENST00000435425 DIRAS2Q96HU8 199 aa14.69□□□□□ -0.06
SHH-203ENST00000435425 HARBI1Q96MB7 349 aa14.69□□□□□ -0.06
SHH-203ENST00000435425 ABHD1Q96SE0 405 aa14.69□□□□□ -0.06
SHH-203ENST00000435425 ZNF2Q9BSG1 426 aaPredicted RBP14.69□□□□□ -0.06
SHH-203ENST00000435425 SLIRPQ9GZT3 109 aaKnown RBP14.69□□□□□ -0.06
SHH-203ENST00000435425 OR51J1Q9H342 316 aa14.69□□□□□ -0.06
SHH-203ENST00000435425 RSL24D1Q9UHA3 163 aaKnown RBP14.69□□□□□ -0.06
SHH-203ENST00000435425 WSB1Q9Y6I7 421 aa14.69□□□□□ -0.06
SHH-203ENST00000435425 ATP6V0E1O15342 81 aa14.68□□□□□ -0.06
SHH-203ENST00000435425 OPN1MWP04001 364 aa14.68□□□□□ -0.06
SHH-203ENST00000435425 OPN1MW2P0DN77 364 aa14.68□□□□□ -0.06
SHH-203ENST00000435425 OPN1MW3P0DN78 364 aa14.68□□□□□ -0.06
SHH-203ENST00000435425 OVCH2Q7RTZ1 564 aa14.68□□□□□ -0.06
SHH-203ENST00000435425 TPSG1Q9NRR2 321 aa14.68□□□□□ -0.06
SHH-203ENST00000435425 PRELID3BQ9Y3B1 194 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms