RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 SPATA45Q537H7 98 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 LDLRAD2Q5SZI1 272 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 C1orf140Q5VVS0 124 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 RFLNAQ6ZTI6 216 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 DPY19L4Q7Z388 723 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 NIT1Q86X76 327 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 LYPD6Q86Y78 171 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 GJC3Q8NFK1 279 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 OR5D14Q8NGL3 314 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 MBD3L1Q8WWY6 194 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 ELSPBP1Q96BH3 223 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 GPR146Q96CH1 333 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 MSI2Q96DH6 328 aaKnown RBP4.61□□□□□ -1.67
CLK1-202ENST00000409403 STARD4Q96DR4 205 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 IL17FQ96PD4 163 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 ATP5SQ99766 215 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 TMEM59Q9BXS4 323 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 MRPL13Q9BYD1 178 aaKnown RBP4.61□□□□□ -1.67
CLK1-202ENST00000409403 SAMD10Q9BYL1 202 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 NAA60Q9H7X0 242 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 MANBALQ9NQG1 85 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 WSB2Q9NYS7 404 aaPredicted RBP4.61□□□□□ -1.67
CLK1-202ENST00000409403 CLEC4EQ9ULY5 219 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 RCL1Q9Y2P8 373 aaKnown RBP4.61□□□□□ -1.67
CLK1-202ENST00000409403 MRPS2Q9Y399 296 aaKnown RBP4.61□□□□□ -1.67
CLK1-202ENST00000409403 CSPG4Q6UVK1 2322 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 SCN2AQ99250 2005 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 TRBV9A0A0B4J1U6 114 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 NPIPA5A0A0B4J1W7 369 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 A0A1W2PRS3 328 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 FEZF1A0PJY2 475 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 GAGE12JA6NER3 117 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 GLOD5A6NK44 160 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 SIRPB1O00241 398 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 CCL16O15467 120 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 REG1AP05451 166 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 NGFRP08138 427 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 C8orf89P0DMQ9 161 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 IGLC2P0DOY2 106 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 IGLC3P0DOY3 106 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 CEBPBP17676 345 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 GLRA1P23415 457 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 GABRA3P34903 492 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 CDC34P49427 236 aaPredicted RBP4.61□□□□□ -1.67
CLK1-202ENST00000409403 ZNF133P52736 654 aaPredicted RBP4.61□□□□□ -1.67
CLK1-202ENST00000409403 SNU13P55769 128 aaKnown RBP4.61□□□□□ -1.67
CLK1-202ENST00000409403 SCGB2A2Q13296 93 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 UNC119Q13432 240 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 MMDQ15546 238 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 MSMO1Q15800 293 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 PCK2Q16822 640 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 SNAI3Q3KNW1 292 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 COX19Q49B96 90 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 LRRC10Q5BKY1 277 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 C10orf25Q5T742 122 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 C9orf135Q5VTT2 229 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 CST9LP1Q5W188 147 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 WDR25Q64LD2 544 aaPredicted RBP4.61□□□□□ -1.67
CLK1-202ENST00000409403 PRSS57Q6UWY2 283 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 HSD11B1LQ7Z5J1 315 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 TMEM123Q8N131 208 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 MTURNQ8N3F0 131 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 SIGLECL1Q8N7X8 197 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 STPG4Q8N801 248 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 ZNF709Q8N972 641 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 OR5D18Q8NGL1 313 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 SPATA3Q8NHX4 192 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 ZNRF4Q8WWF5 429 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 BCL2L2Q92843 193 aaPredicted RBP4.61□□□□□ -1.67
CLK1-202ENST00000409403 IL22RA2Q969J5 263 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 MMABQ96EY8 250 aaPredicted RBP4.61□□□□□ -1.67
CLK1-202ENST00000409403 REEP6Q96HR9 211 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 PSMG3Q9BT73 122 aaPredicted RBP4.61□□□□□ -1.67
CLK1-202ENST00000409403 MAP6D1Q9H9H5 199 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 DECR2Q9NUI1 292 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 ABI3Q9P2A4 366 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 ZNF319Q9P2F9 582 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 PILRBQ9UKJ0 227 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 PXMP4Q9Y6I8 212 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 SPACA6W5XKT8 324 aa4.61□□□□□ -1.67
CLK1-202ENST00000409403 IGHV2-26A0A0B4J1V2 119 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 A0A1B0GTH9 108 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 CGB1A6NKQ9 187 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 VSTM2BA6NLU5 285 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 ZFP92A6NM28 416 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 CEBPZOSA8MTT3 80 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 ZNF878C9JN71 531 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 K7ENP7 123 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 HYPMO75409 117 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 NRASP01111 189 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 KRASP01116 189 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 AADACP22760 399 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 UCP1P25874 307 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 CTRLP40313 264 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 NKX2-1P43699 371 aaPredicted RBP4.6□□□□□ -1.67
CLK1-202ENST00000409403 SLC11A1P49279 550 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 PSMB3P49720 205 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 YPEL3P61236 119 aaPredicted RBP4.6□□□□□ -1.67
CLK1-202ENST00000409403 GNB2P62879 340 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 SERF2P84101 59 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms