RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 VKORC1L1Q8N0U8 176 aa17.61■□□□□ 0.41
CTCF-202ENST00000401394 LSM10Q969L4 123 aaKnown RBP17.61■□□□□ 0.41
CTCF-202ENST00000401394 B4E171 279 aa17.61■□□□□ 0.41
CTCF-202ENST00000401394 PAX1P15863 534 aa17.61■□□□□ 0.41
CTCF-202ENST00000401394 TSPAN7P41732 249 aa17.61■□□□□ 0.41
CTCF-202ENST00000401394 CLDN18P56856 261 aa17.61■□□□□ 0.41
CTCF-202ENST00000401394 ASPHD1Q5U4P2 390 aa17.61■□□□□ 0.41
CTCF-202ENST00000401394 OR2J1Q9GZK6 312 aa17.61■□□□□ 0.41
CTCF-202ENST00000401394 CTDSP1Q9GZU7 261 aa17.61■□□□□ 0.41
CTCF-202ENST00000401394 ZNF320A2RRD8 509 aa17.6■□□□□ 0.41
CTCF-202ENST00000401394 A6NNC1 897 aa17.6■□□□□ 0.41
CTCF-202ENST00000401394 C11orf94C9JXX5 98 aa17.6■□□□□ 0.41
CTCF-202ENST00000401394 RBFOX2O43251 390 aaKnown RBP eCLIP17.6■□□□□ 0.41
CTCF-202ENST00000401394 DNPH1O43598 174 aa17.6■□□□□ 0.41
CTCF-202ENST00000401394 GNB1P62873 340 aa17.6■□□□□ 0.41
CTCF-202ENST00000401394 FZR1Q9UM11 496 aa17.6■□□□□ 0.41
CTCF-202ENST00000401394 DMXL2Q8TDJ6 3036 aa17.6■□□□□ 0.41
CTCF-202ENST00000401394 IFNA1P01562 189 aa17.6■□□□□ 0.41
CTCF-202ENST00000401394 NDUFAF3Q9BU61 184 aa17.6■□□□□ 0.41
CTCF-202ENST00000401394 PMS2P5A8MQ11 134 aa17.59■□□□□ 0.41
CTCF-202ENST00000401394 MKRN2OSH3BPM6 223 aa17.59■□□□□ 0.41
CTCF-202ENST00000401394 SRSF7Q16629 238 aaKnown RBP eCLIP17.59■□□□□ 0.41
CTCF-202ENST00000401394 MDP1Q86V88 176 aa17.59■□□□□ 0.41
CTCF-202ENST00000401394 SAXO1Q8IYX7 474 aa17.59■□□□□ 0.41
CTCF-202ENST00000401394 TMEM170AQ8WVE7 144 aa17.59■□□□□ 0.41
CTCF-202ENST00000401394 NPCDR1Q9BY65 106 aa17.59■□□□□ 0.41
CTCF-202ENST00000401394 METRNQ9UJH8 293 aa17.59■□□□□ 0.41
CTCF-202ENST00000401394 ARFGEF3Q5TH69 2177 aa17.59■□□□□ 0.41
CTCF-202ENST00000401394 TRBV20OR9-2A0A075B6H5 130 aa17.59■□□□□ 0.41
CTCF-202ENST00000401394 TMEM265A0A087WTH1 108 aa17.59■□□□□ 0.41
CTCF-202ENST00000401394 NXPH2O95156 264 aa17.59■□□□□ 0.41
CTCF-202ENST00000401394 ACTL10Q5JWF8 245 aa17.59■□□□□ 0.41
CTCF-202ENST00000401394 ZNF497Q6ZNH5 498 aa17.59■□□□□ 0.41
CTCF-202ENST00000401394 ZNF573Q86YE8 665 aa17.59■□□□□ 0.41
CTCF-202ENST00000401394 MRGPRDQ8TDS7 321 aa17.59■□□□□ 0.41
CTCF-202ENST00000401394 MSL2Q9HCI7 577 aa17.59■□□□□ 0.41
CTCF-202ENST00000401394 NEURL1O76050 574 aa17.58■□□□□ 0.41
CTCF-202ENST00000401394 SSTR5P35346 364 aa17.58■□□□□ 0.41
CTCF-202ENST00000401394 APH1AQ96BI3 265 aa17.58■□□□□ 0.41
CTCF-202ENST00000401394 C2orf88Q9BSF0 95 aa17.58■□□□□ 0.41
CTCF-202ENST00000401394 ACTR3CQ9C0K3 210 aaPredicted RBP17.58■□□□□ 0.41
CTCF-202ENST00000401394 OR6C3Q9NZP0 311 aa17.58■□□□□ 0.41
CTCF-202ENST00000401394 LINC00473A8K010 186 aa17.58■□□□□ 0.4
CTCF-202ENST00000401394 SLC10A1Q14973 349 aa17.58■□□□□ 0.4
CTCF-202ENST00000401394 F2Z2F3 143 aa17.58■□□□□ 0.4
CTCF-202ENST00000401394 CT55Q8WUE5 264 aa17.58■□□□□ 0.4
CTCF-202ENST00000401394 PINX1Q96BK5 328 aaKnown RBP17.58■□□□□ 0.4
CTCF-202ENST00000401394 LIN7CQ9NUP9 197 aaKnown RBP17.58■□□□□ 0.4
CTCF-202ENST00000401394 SS18L1O75177 396 aaPredicted RBP17.57■□□□□ 0.4
CTCF-202ENST00000401394 SLC25A6P12236 298 aa17.57■□□□□ 0.4
CTCF-202ENST00000401394 RNASEH2CQ8TDP1 164 aaKnown RBP17.57■□□□□ 0.4
CTCF-202ENST00000401394 DTD1Q8TEA8 209 aa17.57■□□□□ 0.4
CTCF-202ENST00000401394 PILRBQ9UKJ0 227 aa17.57■□□□□ 0.4
CTCF-202ENST00000401394 CTXND1A0A1B0GTU2 59 aa17.57■□□□□ 0.4
CTCF-202ENST00000401394 C12orf77C9JDV5 145 aa17.57■□□□□ 0.4
CTCF-202ENST00000401394 POLR3KQ9Y2Y1 108 aaPredicted RBP17.57■□□□□ 0.4
CTCF-202ENST00000401394 UTF1Q5T230 341 aa17.56■□□□□ 0.4
CTCF-202ENST00000401394 OR2M7Q8NG81 312 aa17.56■□□□□ 0.4
CTCF-202ENST00000401394 PRO3102Q9H379 93 aa17.56■□□□□ 0.4
CTCF-202ENST00000401394 TNRC6AQ8NDV7 1962 aaKnown RBP17.56■□□□□ 0.4
CTCF-202ENST00000401394 LRRC30A6NM36 301 aa17.56■□□□□ 0.4
CTCF-202ENST00000401394 RPL29P47914 159 aaKnown RBP17.56■□□□□ 0.4
CTCF-202ENST00000401394 PLP2Q04941 152 aa17.56■□□□□ 0.4
CTCF-202ENST00000401394 LINC01551Q86U37 167 aa17.56■□□□□ 0.4
CTCF-202ENST00000401394 RIMS4Q9H426 269 aaPredicted RBP17.56■□□□□ 0.4
CTCF-202ENST00000401394 ZNF703Q9H7S9 590 aaPredicted RBP17.56■□□□□ 0.4
CTCF-202ENST00000401394 WISP2O76076 250 aa17.55■□□□□ 0.4
CTCF-202ENST00000401394 OR10P1Q8NGE3 313 aa17.55■□□□□ 0.4
CTCF-202ENST00000401394 SIT1Q9Y3P8 196 aa17.55■□□□□ 0.4
CTCF-202ENST00000401394 TRAPPC1Q9Y5R8 145 aa17.55■□□□□ 0.4
CTCF-202ENST00000401394 SLC17A3O00476 420 aa17.55■□□□□ 0.4
CTCF-202ENST00000401394 SPINK4O60575 86 aa17.55■□□□□ 0.4
CTCF-202ENST00000401394 CNN1P51911 297 aaKnown RBP17.55■□□□□ 0.4
CTCF-202ENST00000401394 AGMATQ9BSE5 352 aa17.55■□□□□ 0.4
CTCF-202ENST00000401394 QTRT1Q9BXR0 403 aaKnown RBP17.55■□□□□ 0.4
CTCF-202ENST00000401394 MRPL37Q9BZE1 423 aaKnown RBP17.55■□□□□ 0.4
CTCF-202ENST00000401394 HSPB7Q9UBY9 170 aa17.55■□□□□ 0.4
CTCF-202ENST00000401394 LOXL2Q9Y4K0 774 aa17.55■□□□□ 0.4
CTCF-202ENST00000401394 Q8N7P7 452 aa17.55■□□□□ 0.4
CTCF-202ENST00000401394 NEIL1Q96FI4 390 aaPredicted RBP17.55■□□□□ 0.4
CTCF-202ENST00000401394 NEU1Q99519 415 aa17.55■□□□□ 0.4
CTCF-202ENST00000401394 CD82P27701 267 aa17.54■□□□□ 0.4
CTCF-202ENST00000401394 HOXA6P31267 233 aa17.54■□□□□ 0.4
CTCF-202ENST00000401394 NUTF2P61970 127 aaKnown RBP17.54■□□□□ 0.4
CTCF-202ENST00000401394 SGMS2Q8NHU3 365 aa17.54■□□□□ 0.4
CTCF-202ENST00000401394 DEFB127Q9H1M4 99 aa17.54■□□□□ 0.4
CTCF-202ENST00000401394 TRBV6-6A0A0A6YYG2 114 aa17.54■□□□□ 0.4
CTCF-202ENST00000401394 LRP5LA4QPB2 252 aa17.54■□□□□ 0.4
CTCF-202ENST00000401394 RRHO14718 337 aa17.54■□□□□ 0.4
CTCF-202ENST00000401394 CBLN1P23435 193 aa17.54■□□□□ 0.4
CTCF-202ENST00000401394 GBGT1Q8N5D6 347 aa17.54■□□□□ 0.4
CTCF-202ENST00000401394 ROS1P08922 2347 aa17.54■□□□□ 0.4
CTCF-202ENST00000401394 ZNF705FA8MVS1 300 aaPredicted RBP17.53■□□□□ 0.4
CTCF-202ENST00000401394 ZNF705DP0CH99 300 aaPredicted RBP17.53■□□□□ 0.4
CTCF-202ENST00000401394 ZNF705BP0CI00 300 aaPredicted RBP17.53■□□□□ 0.4
CTCF-202ENST00000401394 CENPVQ7Z7K6 275 aaPredicted RBP17.53■□□□□ 0.4
CTCF-202ENST00000401394 GCNT2Q8N0V5 402 aa17.53■□□□□ 0.4
CTCF-202ENST00000401394 TMEM45BQ96B21 275 aa17.53■□□□□ 0.4
CTCF-202ENST00000401394 TMEM147Q9BVK8 224 aa17.53■□□□□ 0.4
CTCF-202ENST00000401394 TTTY12Q9BZ98 90 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms