RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 SNX29P2Q8IUI4 249 aa13.4□□□□□ -0.26
CLN3-203ENST00000357806 DYNC2LI1Q8TCX1 351 aa13.4□□□□□ -0.26
CLN3-203ENST00000357806 TSNAXQ99598 290 aaKnown RBP13.4□□□□□ -0.26
CLN3-203ENST00000357806 GON7Q9BXV9 100 aa13.4□□□□□ -0.26
CLN3-203ENST00000357806 MMP27Q9H306 513 aa13.4□□□□□ -0.26
CLN3-203ENST00000357806 SCPEP1Q9HB40 452 aa13.4□□□□□ -0.26
CLN3-203ENST00000357806 EXTL2Q9UBQ6 330 aa13.4□□□□□ -0.26
CLN3-203ENST00000357806 ADAM30Q9UKF2 790 aa13.4□□□□□ -0.26
CLN3-203ENST00000357806 IGKV1D-13A0A0B4J2D9 117 aa13.39□□□□□ -0.27
CLN3-203ENST00000357806 RRHO14718 337 aa13.39□□□□□ -0.27
CLN3-203ENST00000357806 RGS5O15539 181 aa13.39□□□□□ -0.27
CLN3-203ENST00000357806 SPDEFO95238 335 aa13.39□□□□□ -0.27
CLN3-203ENST00000357806 TSPAN15O95858 294 aa13.39□□□□□ -0.27
CLN3-203ENST00000357806 IGKV1-13P0DP09 117 aa13.39□□□□□ -0.27
CLN3-203ENST00000357806 FCGR2CP31995 323 aa13.39□□□□□ -0.27
CLN3-203ENST00000357806 DUTP33316 252 aaKnown RBP13.39□□□□□ -0.27
CLN3-203ENST00000357806 TAS2R46P59540 309 aa13.39□□□□□ -0.27
CLN3-203ENST00000357806 RTL8BQ17RB0 113 aa13.39□□□□□ -0.27
CLN3-203ENST00000357806 GPX8Q8TED1 209 aa13.39□□□□□ -0.27
CLN3-203ENST00000357806 FLYWCH2Q96CP2 140 aaKnown RBP13.39□□□□□ -0.27
CLN3-203ENST00000357806 LINC00527Q9UJ94 153 aa13.39□□□□□ -0.27
CLN3-203ENST00000357806 WNK1Q9H4A3 2382 aa13.38□□□□□ -0.27
CLN3-203ENST00000357806 LINC01548A6NM66 108 aa13.38□□□□□ -0.27
CLN3-203ENST00000357806 SULT1C2O00338 296 aa13.38□□□□□ -0.27
CLN3-203ENST00000357806 PPYP01298 95 aa13.38□□□□□ -0.27
CLN3-203ENST00000357806 OPN1MWP04001 364 aa13.38□□□□□ -0.27
CLN3-203ENST00000357806 OPN1MW2P0DN77 364 aa13.38□□□□□ -0.27
CLN3-203ENST00000357806 OPN1MW3P0DN78 364 aa13.38□□□□□ -0.27
CLN3-203ENST00000357806 RRASP10301 218 aa13.38□□□□□ -0.27
CLN3-203ENST00000357806 NAT1P18440 290 aa13.38□□□□□ -0.27
CLN3-203ENST00000357806 AADACP22760 399 aa13.38□□□□□ -0.27
CLN3-203ENST00000357806 RPS16P62249 146 aaKnown RBP13.38□□□□□ -0.27
CLN3-203ENST00000357806 CD83Q01151 205 aa13.38□□□□□ -0.27
CLN3-203ENST00000357806 NSUN5P1Q3KNT7 163 aa13.38□□□□□ -0.27
CLN3-203ENST00000357806 LIN54Q6MZP7 749 aa13.38□□□□□ -0.27
CLN3-203ENST00000357806 C10orf99Q6UWK7 81 aa13.38□□□□□ -0.27
CLN3-203ENST00000357806 ZNF329Q86UD4 541 aa13.38□□□□□ -0.27
CLN3-203ENST00000357806 FBXL15Q9H469 300 aa13.38□□□□□ -0.27
CLN3-203ENST00000357806 EHFQ9NZC4 300 aa13.38□□□□□ -0.27
CLN3-203ENST00000357806 ZNF580Q9UK33 172 aa13.38□□□□□ -0.27
CLN3-203ENST00000357806 CCDC160A6NGH7 325 aa13.37□□□□□ -0.27
CLN3-203ENST00000357806 KCTD9Q7L273 389 aa13.37□□□□□ -0.27
CLN3-203ENST00000357806 LAX1Q8IWV1 398 aa13.37□□□□□ -0.27
CLN3-203ENST00000357806 COMMD1Q8N668 190 aa13.37□□□□□ -0.27
CLN3-203ENST00000357806 BVESQ8NE79 360 aa13.37□□□□□ -0.27
CLN3-203ENST00000357806 OR5H2Q8NGV7 314 aa13.37□□□□□ -0.27
CLN3-203ENST00000357806 DDB2Q92466 427 aa13.37□□□□□ -0.27
CLN3-203ENST00000357806 HARBI1Q96MB7 349 aa13.37□□□□□ -0.27
CLN3-203ENST00000357806 METTL1Q9UBP6 276 aaKnown RBP13.37□□□□□ -0.27
CLN3-203ENST00000357806 RBMX2Q9Y388 322 aaKnown RBP13.37□□□□□ -0.27
CLN3-203ENST00000357806 TSSC4Q9Y5U2 329 aaPredicted RBP13.37□□□□□ -0.27
CLN3-203ENST00000357806 CEPT1Q9Y6K0 416 aa13.37□□□□□ -0.27
CLN3-203ENST00000357806 TCRBV4S1A1TA0A5B7 111 aa13.36□□□□□ -0.27
CLN3-203ENST00000357806 LINC00473A8K010 186 aa13.36□□□□□ -0.27
CLN3-203ENST00000357806 TPPPO94811 219 aa13.36□□□□□ -0.27
CLN3-203ENST00000357806 IGLV2-14P01704 120 aa13.36□□□□□ -0.27
CLN3-203ENST00000357806 IGF1P05019 195 aa13.36□□□□□ -0.27
CLN3-203ENST00000357806 VDAC1P21796 283 aa13.36□□□□□ -0.27
CLN3-203ENST00000357806 RCVRNP35243 200 aa13.36□□□□□ -0.27
CLN3-203ENST00000357806 TCTEX1D4Q5JR98 221 aa13.36□□□□□ -0.27
CLN3-203ENST00000357806 KHDC1LQ5JSQ8 128 aa13.36□□□□□ -0.27
CLN3-203ENST00000357806 OVCH2Q7RTZ1 564 aa13.36□□□□□ -0.27
CLN3-203ENST00000357806 C15orf40Q8WUR7 153 aa13.36□□□□□ -0.27
CLN3-203ENST00000357806 SECTM1Q8WVN6 248 aa13.36□□□□□ -0.27
CLN3-203ENST00000357806 GIMAP1Q8WWP7 306 aa13.36□□□□□ -0.27
CLN3-203ENST00000357806 HSD17B10Q99714 261 aaKnown RBP13.36□□□□□ -0.27
CLN3-203ENST00000357806 MIXL1Q9H2W2 232 aa13.36□□□□□ -0.27
CLN3-203ENST00000357806 OR51J1Q9H342 316 aa13.36□□□□□ -0.27
CLN3-203ENST00000357806 IGHV7-81A0A0B4J1V7 117 aa13.36□□□□□ -0.27
CLN3-203ENST00000357806 SHOXO15266 292 aa13.36□□□□□ -0.27
CLN3-203ENST00000357806 PMP2P02689 132 aa13.36□□□□□ -0.27
CLN3-203ENST00000357806 LGALS7P47929 136 aa13.36□□□□□ -0.27
CLN3-203ENST00000357806 FXYD4P59646 89 aa13.36□□□□□ -0.27
CLN3-203ENST00000357806 HERV-K104P61576 105 aa13.36□□□□□ -0.27
CLN3-203ENST00000357806 DYRK1AQ13627 763 aa13.36□□□□□ -0.27
CLN3-203ENST00000357806 PSG5Q15238 335 aa13.36□□□□□ -0.27
CLN3-203ENST00000357806 MSMO1Q15800 293 aa13.36□□□□□ -0.27
CLN3-203ENST00000357806 TMEM177Q53S58 311 aa13.36□□□□□ -0.27
CLN3-203ENST00000357806 PARP11Q9NR21 331 aa13.36□□□□□ -0.27
CLN3-203ENST00000357806 PRELID3BQ9Y3B1 194 aa13.36□□□□□ -0.27
CLN3-203ENST00000357806 FBN3Q75N90 2809 aa13.35□□□□□ -0.27
CLN3-203ENST00000357806 PKD1L1Q8TDX9 2849 aa13.35□□□□□ -0.27
CLN3-203ENST00000357806 CMYA5Q8N3K9 4069 aa13.35□□□□□ -0.27
CLN3-203ENST00000357806 ADARB2-AS1A8MUL3 147 aa13.35□□□□□ -0.27
CLN3-203ENST00000357806 CTDSP2O14595 271 aa13.35□□□□□ -0.27
CLN3-203ENST00000357806 ATP6V0E1O15342 81 aa13.35□□□□□ -0.27
CLN3-203ENST00000357806 SLC25A17O43808 307 aa13.35□□□□□ -0.27
CLN3-203ENST00000357806 HRH1P35367 487 aa13.35□□□□□ -0.27
CLN3-203ENST00000357806 RFX2P48378 723 aa13.35□□□□□ -0.27
CLN3-203ENST00000357806 TEX38Q6PEX7 206 aa13.35□□□□□ -0.27
CLN3-203ENST00000357806 OR4F17Q8NGA8 305 aa13.35□□□□□ -0.27
CLN3-203ENST00000357806 FAM110DQ8TAY7 271 aaPredicted RBP13.35□□□□□ -0.27
CLN3-203ENST00000357806 OR4F4Q96R69 305 aa13.35□□□□□ -0.27
CLN3-203ENST00000357806 C6orf62Q9GZU0 229 aaPredicted RBP13.35□□□□□ -0.27
CLN3-203ENST00000357806 SLC5A7Q9GZV3 580 aa13.35□□□□□ -0.27
CLN3-203ENST00000357806 A0A1W2PRX2 142 aa13.34□□□□□ -0.27
CLN3-203ENST00000357806 CRYZL1O95825 349 aa13.34□□□□□ -0.27
CLN3-203ENST00000357806 HLA-DMAP28067 261 aa13.34□□□□□ -0.27
CLN3-203ENST00000357806 ZNF660Q6AZW8 331 aaPredicted RBP13.34□□□□□ -0.27
CLN3-203ENST00000357806 ZNF66Q6ZN08 573 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms