RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 TCHHQ07283 1943 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 AMBPP02760 352 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 ZNF688P0C7X2 276 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 ERVS71-1P61550 626 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 HLA-DRB3P79483 266 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 C11orf91Q3C1V1 193 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 ZNF324BQ6AW86 544 aaPredicted RBP7.03□□□□□ -1.28
HMGB1-203ENST00000341423 RNASEKQ6P5S7 137 aaKnown RBP7.03□□□□□ -1.28
HMGB1-203ENST00000341423 PDPNQ86YL7 162 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 TXNDC17Q9BRA2 123 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 TM2D2Q9BX73 214 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 FREM1Q5H8C1 2179 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 F8P00451 2351 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 HSBP1L1C9JCN9 74 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 CD8AP01732 235 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 IAPPP10997 89 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 TPT1P13693 172 aaKnown RBP7.03□□□□□ -1.28
HMGB1-203ENST00000341423 CCL3L1P16619 93 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 CTRB1P17538 263 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 PAX8Q06710 450 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 CTRB2Q6GPI1 263 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 CIARTQ8N365 385 aaPredicted RBP7.03□□□□□ -1.28
HMGB1-203ENST00000341423 PLA2G12AQ9BZM1 189 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 C19orf12Q9NSK7 152 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 PSENENQ9NZ42 101 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 U3KQK5 164 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 NDUFS7O75251 213 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 PGA5P0DJD9 388 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 ZNF266Q14584 549 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 ABLIM2Q6H8Q1 611 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 MRAP2Q96G30 205 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 AP1S3Q96PC3 154 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 WNT5BQ9H1J7 359 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 AUNIPQ9H7T9 357 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 KIAA1551Q9HCM1 1747 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 IGHV4-59P01825 116 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 NHLRC4P0CG21 123 aaPredicted RBP7.03□□□□□ -1.28
HMGB1-203ENST00000341423 UCP1P25874 307 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 CLDN12P56749 244 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 ZNF674Q2M3X9 581 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 FBLN7Q53RD9 439 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 NRARPQ7Z6K4 114 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 LYSMD2Q8IV50 215 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 TMEM252Q8N6L7 170 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 OR4X1Q8NH49 305 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 SYT11Q9BT88 431 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 OR51J1Q9H342 316 aa7.03□□□□□ -1.28
HMGB1-203ENST00000341423 CKAP5Q14008 2032 aa7.02□□□□□ -1.28
HMGB1-203ENST00000341423 DNAJC9-AS1A6NH13 148 aa7.02□□□□□ -1.29
HMGB1-203ENST00000341423 HPRT1P00492 218 aa7.02□□□□□ -1.29
HMGB1-203ENST00000341423 MBP02144 154 aa7.02□□□□□ -1.29
HMGB1-203ENST00000341423 COX5AP20674 150 aa7.02□□□□□ -1.29
HMGB1-203ENST00000341423 FCGR2BP31994 310 aaPredicted RBP7.02□□□□□ -1.29
HMGB1-203ENST00000341423 RAE1P78406 368 aaKnown RBP7.02□□□□□ -1.29
HMGB1-203ENST00000341423 C4orf48Q5BLP8 95 aa7.02□□□□□ -1.29
HMGB1-203ENST00000341423 VAX1Q5SQQ9 334 aa7.02□□□□□ -1.29
HMGB1-203ENST00000341423 LRRC28Q86X40 367 aaPredicted RBP7.02□□□□□ -1.29
HMGB1-203ENST00000341423 CD300AQ9UGN4 299 aa7.02□□□□□ -1.29
HMGB1-203ENST00000341423 ZNF735P0CB33 412 aa7.02□□□□□ -1.29
HMGB1-203ENST00000341423 ERGP11308 486 aa7.02□□□□□ -1.29
HMGB1-203ENST00000341423 SLC25A4P12235 298 aa7.02□□□□□ -1.29
HMGB1-203ENST00000341423 SLC25A6P12236 298 aa7.02□□□□□ -1.29
HMGB1-203ENST00000341423 NCS1P62166 190 aa7.02□□□□□ -1.29
HMGB1-203ENST00000341423 GLDNQ6ZMI3 551 aaPredicted RBP7.02□□□□□ -1.29
HMGB1-203ENST00000341423 CABLES2Q9BTV7 478 aa7.02□□□□□ -1.29
HMGB1-203ENST00000341423 MLXQ9UH92 298 aa7.02□□□□□ -1.29
HMGB1-203ENST00000341423 TSPAN15O95858 294 aa7.02□□□□□ -1.29
HMGB1-203ENST00000341423 DLK1P80370 383 aa7.02□□□□□ -1.29
HMGB1-203ENST00000341423 TCF24Q7RTU0 167 aa7.02□□□□□ -1.29
HMGB1-203ENST00000341423 BPIFA4PQ86YQ2 179 aa7.02□□□□□ -1.29
HMGB1-203ENST00000341423 A0A1W2PS29 197 aa7.02□□□□□ -1.29
HMGB1-203ENST00000341423 ZNF45Q02386 682 aa7.02□□□□□ -1.29
HMGB1-203ENST00000341423 PAX5Q02548 391 aa7.02□□□□□ -1.29
HMGB1-203ENST00000341423 DGAT2L6Q6ZPD8 337 aa7.02□□□□□ -1.29
HMGB1-203ENST00000341423 ZNF486Q96H40 463 aaPredicted RBP7.02□□□□□ -1.29
HMGB1-203ENST00000341423 SIGLEC5O15389 551 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 PGA4P0DJD7 388 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 PGA3P0DJD8 388 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 TTC32Q5I0X7 151 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 FAM216AQ8WUB2 273 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 PLCXD1Q9NUJ7 323 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 LSM2Q9Y333 95 aaKnown RBP7.01□□□□□ -1.29
HMGB1-203ENST00000341423 FAM215AQ9Y5M1 114 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 LRRC37A2A6NM11 1700 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 TRAV39A0A0B4J263 110 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 LY6G6EA0A0G2JKS1 128 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 TMEM129A0AVI4 362 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 METTL15P1P0C7V9 234 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 LEPP41159 167 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 RFX2P48378 723 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 AWAT1Q58HT5 328 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 CHCHD5Q9BSY4 110 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 ABCG5Q9H222 651 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 Q9N2K0 584 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 TREM1Q9NP99 234 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 U3KQA8 63 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.01□□□□□ -1.29
HMGB1-203ENST00000341423 OIP5O43482 229 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 INSP01308 110 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 CHATP28329 748 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms