RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 ATXN7O15265 892 aaPredicted RBP3.53□□□□□ -1.84
NEDD4-201ENST00000338963 NUPR1O60356 82 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 PAGE4O60829 102 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 MPDU1O75352 247 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 CELA2AP08217 269 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 ARL4DP49703 201 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 ZXDAP98168 799 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 EFEMP1Q12805 493 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 ALKBH6Q3KRA9 238 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 LRRC25Q8N386 305 aaPredicted RBP3.53□□□□□ -1.84
NEDD4-201ENST00000338963 HOXB13Q92826 284 aaPredicted RBP3.53□□□□□ -1.84
NEDD4-201ENST00000338963 PIGTQ969N2 578 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 NUS1Q96E22 293 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 OR2W1Q9Y3N9 320 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 RICTORQ6R327 1708 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 ZNF816-ZNF321PA0A0X1KG74 233 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 A0A1B0GWA3 101 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 C5orf49A4QMS7 147 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 SHISA9B4DS77 424 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 HLA-DRB4P13762 266 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 CXCL9Q07325 125 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 CLEC12BQ2HXU8 276 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 TBC1D28Q2M2D7 210 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 RBMXL3Q8N7X1 1067 aaKnown RBP3.53□□□□□ -1.84
NEDD4-201ENST00000338963 SYT8Q8NBV8 401 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 OR1F12Q8NHA8 337 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 TMEM133Q9H2Q1 129 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 GLIPR2Q9H4G4 154 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 PSENENQ9NZ42 101 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 POLDIP2Q9Y2S7 368 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 HLA-DRB4X5D2U9 266 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 A0A1W2PRE2 83 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 GGTLC3B5MD39 225 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 SMAD7O15105 426 aaKnown RBP3.53□□□□□ -1.84
NEDD4-201ENST00000338963 SSSCA1O60232 199 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 BLVRBP30043 206 aaPredicted RBP3.53□□□□□ -1.84
NEDD4-201ENST00000338963 SLC38A11Q08AI6 406 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 TNXAQ16473 311 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 TMEM219Q86XT9 240 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 GVQW1Q8N7I0 195 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 OR5D13Q8NGL4 314 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 OR52N5Q8NH56 324 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 SPAG8Q99932 426 aaPredicted RBP3.53□□□□□ -1.84
NEDD4-201ENST00000338963 LINC00597Q9H2U6 94 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 MYH11P35749 1972 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 HMGA1P17096 107 aaKnown RBP3.53□□□□□ -1.84
NEDD4-201ENST00000338963 RPS24P62847 133 aaKnown RBP3.53□□□□□ -1.84
NEDD4-201ENST00000338963 DMRTC1Q5HYR2 192 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 LINC01590Q5TEZ4 76 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.53□□□□□ -1.84
NEDD4-201ENST00000338963 PNPLA5Q7Z6Z6 429 aaPredicted RBP3.53□□□□□ -1.84
NEDD4-201ENST00000338963 DTX1Q86Y01 620 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 PFN4Q8NHR9 129 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 ACER1Q8TDN7 264 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 PRELID3AQ96N28 172 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 R4GN57 208 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 E9PLN8 166 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 SRD5A1P18405 259 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 CST5P28325 142 aaPredicted RBP3.52□□□□□ -1.85
NEDD4-201ENST00000338963 C1QL2Q7Z5L3 287 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 PIGCQ92535 297 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 BMFQ96LC9 184 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 SPATA33Q96N06 139 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 MYH4Q9Y623 1939 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 IGHV1-24A0A0C4DH33 117 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 OR2H2O95918 312 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 EPPINO95925 133 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 PI3P19957 117 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 ACP1P24666 158 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 HOXD9P28356 352 aaPredicted RBP3.52□□□□□ -1.85
NEDD4-201ENST00000338963 LYZL2Q7Z4W2 148 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 OR4C13Q8NGP0 309 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 COPS9Q8WXC6 57 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 ONECUT1Q9UBC0 465 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 CACNA1SQ13698 1873 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 UPK3BL1B0FP48 263 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 UPK3BL2E5RIL1 263 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 SOX1O00570 391 aaPredicted RBP3.52□□□□□ -1.85
NEDD4-201ENST00000338963 SYNGR2O43760 224 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 OR2J3O76001 311 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 FAM106CPP0CH98 169 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 MGST1P10620 155 aaKnown RBP3.52□□□□□ -1.85
NEDD4-201ENST00000338963 PVRP15151 417 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 PTGDSP41222 190 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 PAX9P55771 341 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 NDUFV3P56181 108 aaKnown RBP3.52□□□□□ -1.85
NEDD4-201ENST00000338963 FAM106AQ4KMX7 169 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 TMEM215Q68D42 235 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 SLC48A1Q6P1K1 146 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 MOB3BQ86TA1 216 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 MEX3DQ86XN8 651 aaKnown RBP3.52□□□□□ -1.85
NEDD4-201ENST00000338963 ZNF525Q8N782 197 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 TAF15Q92804 592 aaKnown RBP eCLIP3.52□□□□□ -1.85
NEDD4-201ENST00000338963 DAZLQ92904 295 aaKnown RBP3.52□□□□□ -1.85
NEDD4-201ENST00000338963 C11orf1Q9H5F2 150 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 SSUH2Q9Y2M2 353 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 WNT2P09544 360 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 CCL23P55773 120 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 ERVK11-1P61568 191 aa3.52□□□□□ -1.85
NEDD4-201ENST00000338963 RPL8P62917 257 aaKnown RBP3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms