RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 MMP9P14780 707 aa12.15□□□□□ -0.46
CCDC88C-202ENST00000334448 PRRX1P54821 245 aa12.15□□□□□ -0.46
CCDC88C-202ENST00000334448 NCR3LG1Q68D85 454 aa12.15□□□□□ -0.46
CCDC88C-202ENST00000334448 BTNL3Q6UXE8 466 aa12.15□□□□□ -0.46
CCDC88C-202ENST00000334448 FAM219AQ8IW50 185 aa12.15□□□□□ -0.46
CCDC88C-202ENST00000334448 SPAG16Q8N0X2 631 aa12.15□□□□□ -0.46
CCDC88C-202ENST00000334448 OR10C1Q96KK4 312 aa12.15□□□□□ -0.46
CCDC88C-202ENST00000334448 PCGF1Q9BSM1 259 aa12.15□□□□□ -0.46
CCDC88C-202ENST00000334448 PDCD10Q9BUL8 212 aa12.15□□□□□ -0.46
CCDC88C-202ENST00000334448 HEXA-AS1Q9H8Q6 139 aa12.15□□□□□ -0.46
CCDC88C-202ENST00000334448 PLEKHA2Q9HB19 425 aa12.15□□□□□ -0.46
CCDC88C-202ENST00000334448 AMMECR1Q9Y4X0 333 aaPredicted RBP12.15□□□□□ -0.46
CCDC88C-202ENST00000334448 POLQO75417 2590 aa12.15□□□□□ -0.47
CCDC88C-202ENST00000334448 C5orf51A6NDU8 294 aa12.14□□□□□ -0.47
CCDC88C-202ENST00000334448 MPTX1A8MV57 137 aa12.14□□□□□ -0.47
CCDC88C-202ENST00000334448 FAM157AC9JC47 383 aa12.14□□□□□ -0.47
CCDC88C-202ENST00000334448 TOR1AO14656 332 aa12.14□□□□□ -0.47
CCDC88C-202ENST00000334448 SLC25A4P12235 298 aa12.14□□□□□ -0.47
CCDC88C-202ENST00000334448 USF1P22415 310 aaPredicted RBP12.14□□□□□ -0.47
CCDC88C-202ENST00000334448 EIF2B2P49770 351 aaKnown RBP12.14□□□□□ -0.47
CCDC88C-202ENST00000334448 ARHGDIBP52566 201 aa12.14□□□□□ -0.47
CCDC88C-202ENST00000334448 LCN2P80188 198 aa12.14□□□□□ -0.47
CCDC88C-202ENST00000334448 IAH1Q2TAA2 248 aaPredicted RBP12.14□□□□□ -0.47
CCDC88C-202ENST00000334448 DHRS7BQ6IAN0 325 aaPredicted RBP12.14□□□□□ -0.47
CCDC88C-202ENST00000334448 HCP5Q6MZN7 132 aa12.14□□□□□ -0.47
CCDC88C-202ENST00000334448 ZBTB8BQ8NAP8 495 aaPredicted RBP12.14□□□□□ -0.47
CCDC88C-202ENST00000334448 OR4P4Q8NGL7 312 aa12.14□□□□□ -0.47
CCDC88C-202ENST00000334448 OR10X1Q8NGY0 326 aa12.14□□□□□ -0.47
CCDC88C-202ENST00000334448 PPP1R1CQ8WVI7 109 aa12.14□□□□□ -0.47
CCDC88C-202ENST00000334448 WDR89Q96FK6 387 aaPredicted RBP12.14□□□□□ -0.47
CCDC88C-202ENST00000334448 COA4Q9NYJ1 87 aa12.14□□□□□ -0.47
CCDC88C-202ENST00000334448 TRAV14DV4A0A0A6YYC5 116 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 A0A1B0GU03 582 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 FAM90A9PA6NNJ1 464 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 HMSDA8MTL9 139 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 FAM25EA8MYX2 175 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 LY6LH3BQJ8 138 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 SMLR1H3BR10 107 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 TXNL1O43396 289 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 RAMP3O60896 148 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 HPRT1P00492 218 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 IGKV1-5P01602 117 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 CT45A6P0DMU7 189 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 CT45A5P0DMU8 189 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 CT45A7P0DMV0 189 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 RRASP10301 218 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 LYL1P12980 280 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 LPAR6P43657 344 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 ARF6P62330 175 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 LOXL1Q08397 574 aaPredicted RBP12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 POU2AF1Q16633 256 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 Q5BKY6 102 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 TMEM65Q6PI78 240 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 ZNF383Q8NA42 475 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 OR5AN1Q8NGI8 311 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 OR4D5Q8NGN0 318 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 OR4S2Q8NH73 311 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 SEC22AQ96IW7 307 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 MMP26Q9NRE1 261 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 ZFP57Q9NU63 452 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 ZNRD1Q9P1U0 126 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 INSIG2Q9Y5U4 225 aa12.13□□□□□ -0.47
CCDC88C-202ENST00000334448 C13orf42A0A1B0GVH6 325 aa12.12□□□□□ -0.47
CCDC88C-202ENST00000334448 BUB1B-PAK6H3BSN5 160 aa12.12□□□□□ -0.47
CCDC88C-202ENST00000334448 PITX3O75364 302 aa12.12□□□□□ -0.47
CCDC88C-202ENST00000334448 S1PR2O95136 353 aa12.12□□□□□ -0.47
CCDC88C-202ENST00000334448 MPC2O95563 127 aa12.12□□□□□ -0.47
CCDC88C-202ENST00000334448 ZNF16P17020 682 aaPredicted RBP12.12□□□□□ -0.47
CCDC88C-202ENST00000334448 PSMB6P28072 239 aa12.12□□□□□ -0.47
CCDC88C-202ENST00000334448 DVL1P1P54792 670 aaPredicted RBP12.12□□□□□ -0.47
CCDC88C-202ENST00000334448 PAX8Q06710 450 aa12.12□□□□□ -0.47
CCDC88C-202ENST00000334448 ZNF816Q0VGE8 651 aaPredicted RBP12.12□□□□□ -0.47
CCDC88C-202ENST00000334448 AARDQ4LEZ3 155 aa12.12□□□□□ -0.47
CCDC88C-202ENST00000334448 OR11H4Q8NGC9 324 aa12.12□□□□□ -0.47
CCDC88C-202ENST00000334448 NABP2Q9BQ15 211 aa12.12□□□□□ -0.47
CCDC88C-202ENST00000334448 MMP24Q9Y5R2 645 aa12.12□□□□□ -0.47
CCDC88C-202ENST00000334448 ANKRD17O75179 2603 aaKnown RBP12.12□□□□□ -0.47
CCDC88C-202ENST00000334448 DOCK11Q5JSL3 2073 aa12.12□□□□□ -0.47
CCDC88C-202ENST00000334448 PET100P0DJ07 73 aa12.11□□□□□ -0.47
CCDC88C-202ENST00000334448 TGIF2LXQ8IUE1 241 aa12.11□□□□□ -0.47
CCDC88C-202ENST00000334448 KRTAP1-3Q8IUG1 177 aa12.11□□□□□ -0.47
CCDC88C-202ENST00000334448 DRAXINQ8NBI3 349 aaPredicted RBP12.11□□□□□ -0.47
CCDC88C-202ENST00000334448 RRNAD1Q96FB5 475 aaKnown RBP12.11□□□□□ -0.47
CCDC88C-202ENST00000334448 TBX15Q96SF7 602 aa12.11□□□□□ -0.47
CCDC88C-202ENST00000334448 MRPL20Q9BYC9 149 aaKnown RBP12.11□□□□□ -0.47
CCDC88C-202ENST00000334448 FASNP49327 2511 aaKnown RBP12.11□□□□□ -0.47
CCDC88C-202ENST00000334448 A0A0G2JRQ6 117 aa12.1□□□□□ -0.47
CCDC88C-202ENST00000334448 OOSP1A8MZH6 123 aa12.1□□□□□ -0.47
CCDC88C-202ENST00000334448 B4DSR2 109 aa12.1□□□□□ -0.47
CCDC88C-202ENST00000334448 H0YJW9 148 aa12.1□□□□□ -0.47
CCDC88C-202ENST00000334448 FCGR3BO75015 233 aa12.1□□□□□ -0.47
CCDC88C-202ENST00000334448 APOA2P02652 100 aa12.1□□□□□ -0.47
CCDC88C-202ENST00000334448 MSMBP08118 114 aa12.1□□□□□ -0.47
CCDC88C-202ENST00000334448 HOXB4P17483 251 aaPredicted RBP12.1□□□□□ -0.47
CCDC88C-202ENST00000334448 GATA3P23771 443 aa12.1□□□□□ -0.47
CCDC88C-202ENST00000334448 COX7A1P24310 79 aa12.1□□□□□ -0.47
CCDC88C-202ENST00000334448 AKR1C2P52895 323 aa12.1□□□□□ -0.47
CCDC88C-202ENST00000334448 LINC00205P59089 165 aa12.1□□□□□ -0.47
CCDC88C-202ENST00000334448 RTL8BQ17RB0 113 aa12.1□□□□□ -0.47
CCDC88C-202ENST00000334448 Q5PR19 223 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms