RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 DYRK1AQ13627 763 aa12.63□□□□□ -0.39
CCDC28A-201ENST00000332797 PYHIN1Q6K0P9 492 aa12.63□□□□□ -0.39
CCDC28A-201ENST00000332797 GIMAP1Q8WWP7 306 aa12.63□□□□□ -0.39
CCDC28A-201ENST00000332797 SLC35D1Q9NTN3 355 aa12.63□□□□□ -0.39
CCDC28A-201ENST00000332797 SERTAD4Q9NUC0 356 aa12.63□□□□□ -0.39
CCDC28A-201ENST00000332797 RABL2AQ9UBK7 228 aaPredicted RBP12.63□□□□□ -0.39
CCDC28A-201ENST00000332797 RABL2BQ9UNT1 228 aa12.63□□□□□ -0.39
CCDC28A-201ENST00000332797 GABARAPH6UMI1 98 aa12.62□□□□□ -0.39
CCDC28A-201ENST00000332797 PEX14O75381 377 aa12.62□□□□□ -0.39
CCDC28A-201ENST00000332797 RBBP9O75884 186 aa12.62□□□□□ -0.39
CCDC28A-201ENST00000332797 S100A5P33763 92 aa12.62□□□□□ -0.39
CCDC28A-201ENST00000332797 MRPS10P82664 201 aaKnown RBP12.62□□□□□ -0.39
CCDC28A-201ENST00000332797 SRSF4Q08170 494 aaKnown RBP12.62□□□□□ -0.39
CCDC28A-201ENST00000332797 TMEM17Q86X19 198 aa12.62□□□□□ -0.39
CCDC28A-201ENST00000332797 KLHDC1Q8N7A1 406 aa12.62□□□□□ -0.39
CCDC28A-201ENST00000332797 Q8N9W7 124 aa12.62□□□□□ -0.39
CCDC28A-201ENST00000332797 RASL11BQ9BPW5 248 aa12.62□□□□□ -0.39
CCDC28A-201ENST00000332797 ZNF2Q9BSG1 426 aaPredicted RBP12.62□□□□□ -0.39
CCDC28A-201ENST00000332797 MTFP1Q9UDX5 166 aa12.62□□□□□ -0.39
CCDC28A-201ENST00000332797 RBMX2Q9Y388 322 aaKnown RBP12.62□□□□□ -0.39
CCDC28A-201ENST00000332797 A3GALT2U3KPV4 340 aa12.62□□□□□ -0.39
CCDC28A-201ENST00000332797 FABP12A6NFH5 140 aa12.61□□□□□ -0.39
CCDC28A-201ENST00000332797 M0QYG6 137 aa12.61□□□□□ -0.39
CCDC28A-201ENST00000332797 NBR2O15453 112 aa12.61□□□□□ -0.39
CCDC28A-201ENST00000332797 IGLV2-14P01704 120 aa12.61□□□□□ -0.39
CCDC28A-201ENST00000332797 DUTP33316 252 aaKnown RBP12.61□□□□□ -0.39
CCDC28A-201ENST00000332797 KRTAP10-3P60369 221 aa12.61□□□□□ -0.39
CCDC28A-201ENST00000332797 PDPNQ86YL7 162 aa12.61□□□□□ -0.39
CCDC28A-201ENST00000332797 FAM71E2Q8N5Q1 922 aa12.61□□□□□ -0.39
CCDC28A-201ENST00000332797 SMIM4Q8WVI0 70 aa12.61□□□□□ -0.39
CCDC28A-201ENST00000332797 ADTRPQ96IZ2 230 aa12.61□□□□□ -0.39
CCDC28A-201ENST00000332797 SLC5A7Q9GZV3 580 aa12.61□□□□□ -0.39
CCDC28A-201ENST00000332797 CCL28Q9NRJ3 127 aa12.61□□□□□ -0.39
CCDC28A-201ENST00000332797 LIN7CQ9NUP9 197 aaKnown RBP12.61□□□□□ -0.39
CCDC28A-201ENST00000332797 KIAA1456Q9P272 454 aa12.61□□□□□ -0.39
CCDC28A-201ENST00000332797 LINC00473A8K010 186 aa12.6□□□□□ -0.39
CCDC28A-201ENST00000332797 IGKV1-16P04430 117 aa12.6□□□□□ -0.39
CCDC28A-201ENST00000332797 TSPAN5P62079 268 aa12.6□□□□□ -0.39
CCDC28A-201ENST00000332797 CBX3Q13185 183 aa12.6□□□□□ -0.39
CCDC28A-201ENST00000332797 ACTBL2Q562R1 376 aa12.6□□□□□ -0.39
CCDC28A-201ENST00000332797 ZNF660Q6AZW8 331 aaPredicted RBP12.6□□□□□ -0.39
CCDC28A-201ENST00000332797 SHISA2Q6UWI4 295 aa12.6□□□□□ -0.39
CCDC28A-201ENST00000332797 DHRS11Q6UWP2 260 aa12.6□□□□□ -0.39
CCDC28A-201ENST00000332797 KCTD9Q7L273 389 aa12.6□□□□□ -0.39
CCDC28A-201ENST00000332797 BVESQ8NE79 360 aa12.6□□□□□ -0.39
CCDC28A-201ENST00000332797 CTDSPLO15194 276 aa12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 CD3DP04234 171 aa12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 RPS16P62249 146 aaKnown RBP12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 TAGLNQ01995 201 aaKnown RBP12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 RTL8BQ17RB0 113 aa12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 RNASE10Q5GAN6 216 aaKnown RBP12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 SLC35E3Q7Z769 313 aa12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 NPBQ8NG41 125 aa12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 OR6F1Q8NGZ6 308 aa12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 MOB3AQ96BX8 217 aa12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 FLYWCH2Q96CP2 140 aaKnown RBP12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 SOSTQ9BQB4 213 aa12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 FXYD6Q9H0Q3 95 aa12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 TAS2R8Q9NYW2 309 aa12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 TNFSF12O43508 249 aa12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 NDUFA3O95167 84 aa12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 RRASP10301 218 aa12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 SSBP1Q04837 148 aaKnown RBP12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 PLGLAQ15195 96 aa12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 C5orf64Q2M2E5 130 aa12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 OR2B11Q5JQS5 317 aa12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 VAX1Q5SQQ9 334 aa12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 TMEM229BQ8NBD8 167 aa12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 TCTEX1D2Q8WW35 142 aa12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 DDB2Q92466 427 aa12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 GPHA2Q96T91 129 aa12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 TSNAXQ99598 290 aaKnown RBP12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 HSD17B10Q99714 261 aaKnown RBP12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 RNF5Q99942 180 aa12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 TINAGL1Q9GZM7 467 aaPredicted RBP12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 WNT10AQ9GZT5 417 aa12.59□□□□□ -0.39
CCDC28A-201ENST00000332797 RRHO14718 337 aa12.58□□□□□ -0.4
CCDC28A-201ENST00000332797 IGHG2P01859 326 aa12.58□□□□□ -0.4
CCDC28A-201ENST00000332797 IFNA6P05013 189 aa12.58□□□□□ -0.4
CCDC28A-201ENST00000332797 TAS2R19P59542 299 aa12.58□□□□□ -0.4
CCDC28A-201ENST00000332797 RPL30P62888 115 aaKnown RBP12.58□□□□□ -0.4
CCDC28A-201ENST00000332797 EIF4EBP1Q13541 118 aaPredicted RBP12.58□□□□□ -0.4
CCDC28A-201ENST00000332797 MSMO1Q15800 293 aa12.58□□□□□ -0.4
CCDC28A-201ENST00000332797 ZNF818PQ6ZRF7 136 aa12.58□□□□□ -0.4
CCDC28A-201ENST00000332797 HARBI1Q96MB7 349 aa12.58□□□□□ -0.4
CCDC28A-201ENST00000332797 CITED1Q99966 193 aa12.58□□□□□ -0.4
CCDC28A-201ENST00000332797 HSPB9Q9BQS6 159 aa12.58□□□□□ -0.4
CCDC28A-201ENST00000332797 FBXL15Q9H469 300 aa12.58□□□□□ -0.4
CCDC28A-201ENST00000332797 ZNF107Q9UII5 783 aaPredicted RBP12.58□□□□□ -0.4
CCDC28A-201ENST00000332797 PRELID3BQ9Y3B1 194 aa12.58□□□□□ -0.4
CCDC28A-201ENST00000332797 V9GYH0 126 aa12.58□□□□□ -0.4
CCDC28A-201ENST00000332797 LINC01548A6NM66 108 aa12.57□□□□□ -0.4
CCDC28A-201ENST00000332797 GSTZ1O43708 216 aaPredicted RBP12.57□□□□□ -0.4
CCDC28A-201ENST00000332797 FCGR3BO75015 233 aa12.57□□□□□ -0.4
CCDC28A-201ENST00000332797 CRYZL1O95825 349 aa12.57□□□□□ -0.4
CCDC28A-201ENST00000332797 CSF1P09603 554 aa12.57□□□□□ -0.4
CCDC28A-201ENST00000332797 TBPP20226 339 aa12.57□□□□□ -0.4
CCDC28A-201ENST00000332797 PSG5Q15238 335 aa12.57□□□□□ -0.4
CCDC28A-201ENST00000332797 CNPY1Q3B7I2 92 aa12.57□□□□□ -0.4
CCDC28A-201ENST00000332797 TMEM177Q53S58 311 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms