RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 DNAJC19Q96DA6 116 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 ZNF492Q9P255 531 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 SLC45A1Q9Y2W3 748 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 PEX11BO96011 259 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 THBDP07204 575 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 CFHP08603 1231 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 COMMD6Q7Z4G1 85 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 RIMKLAQ8IXN7 391 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 ADAD2Q8NCV1 583 aaKnown RBP6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 GATA6Q92908 595 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 SPSB1Q96BD6 273 aa6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 RCC1LQ96I51 464 aaKnown RBP6.64□□□□□ -1.35
LIMCH1-201ENST00000313860 IGHG4P01861 327 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 IGFBP2P18065 325 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 UCP2P55851 309 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 DHRS2Q13268 280 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 NEIL2Q969S2 332 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 HSD17B14Q9BPX1 270 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 GPR84Q9NQS5 396 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 YBX2Q9Y2T7 364 aaKnown RBP6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 AMMECR1Q9Y4X0 333 aaPredicted RBP6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 DISP2A7MBM2 1401 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 FAM240AA0A1B0GVK7 77 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 C7orf66A4D0T2 115 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 SPINK2P20155 84 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 KLRD1Q13241 179 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 IFI27L2Q9H2X8 130 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 UBE2ZQ9H832 354 aaPredicted RBP6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 GKN1Q9NS71 199 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 CHTOPQ9Y3Y2 248 aaKnown RBP6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 RIMBP3CA6NJZ7 1639 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 RIMBP3BA6NNM3 1639 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 RIMBP3Q9UFD9 1639 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 FAM90A26D6RGX4 464 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 HMGN2P05204 90 aaKnown RBP6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 HOXB4P17483 251 aaPredicted RBP6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 TCF15Q12870 199 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 FAM90A2PQ658T7 463 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 FAM159AQ6UWV7 190 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 CENPVQ7Z7K6 275 aaPredicted RBP6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 LYPD6Q86Y78 171 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 SMIM19Q96E16 107 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 IMMP2LQ96T52 175 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 CDCA4Q9BXL8 241 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 ZFP64Q9NPA5 681 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 NWD1Q149M9 1564 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 DDTLA6NHG4 134 aaPredicted RBP6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 WNT1P04628 370 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 LGALS2P05162 132 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 FMODQ06828 376 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 CTU1Q7Z7A3 348 aaKnown RBP6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 ATG4DQ86TL0 474 aaPredicted RBP6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 TMEM178AQ8NBL3 297 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 TMEM170AQ8WVE7 144 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 HIST1H2BAQ96A08 127 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 DTX4Q9Y2E6 619 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 MPC2O95563 127 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 SLURP2P0DP57 97 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 PRDX1Q06830 199 aaKnown RBP6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 IL11RAQ14626 422 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 KIR2DS5Q14953 304 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 MORN3Q6PF18 240 aaPredicted RBP6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 PPP1R27Q86WC6 154 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 GCSAMQ8N6F7 178 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 AQP3Q92482 292 aa6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 NDRG4Q9ULP0 352 aaKnown RBP6.63□□□□□ -1.35
LIMCH1-201ENST00000313860 IGHV3-15A0A0B4J1V0 119 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 PROP1O75360 226 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 CD28P10747 220 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 SELPP16109 830 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 DEFB133Q30KQ1 61 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 SLC25A35Q3KQZ1 300 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 CD99L2Q8TCZ2 262 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 CCL17Q92583 94 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 TMEM242Q9NWH2 141 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 NFAT5O94916 1531 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 TRGV2A0A075B6R0 118 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 A0A1W2PP55 124 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 C9orf170A2RU37 121 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 WTIPA6NIX2 430 aaPredicted RBP6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 FAM159BA6NKW6 160 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 SMAD7O15105 426 aaKnown RBP6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 HSPB1P04792 205 aaKnown RBP6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 STARD6P59095 220 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 HERV-K104P63124 156 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 CASC2Q6XLA1 102 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 CXXC4Q9H2H0 198 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 SPANXB1Q9NS25 103 aaPredicted RBP6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 FOXI3A8MTJ6 420 aaPredicted RBP6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 NGFP01138 241 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 AZU1P20160 251 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 RPS11P62280 158 aaKnown RBP eCLIP6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 IGFBP7Q16270 282 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 MIC13Q5XKP0 118 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 FAM174AQ8TBP5 190 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 WDR92Q96MX6 357 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 DSCR8Q96T75 97 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 A4GALTQ9NPC4 353 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 A2ML1A8K2U0 1454 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 IGHV5-10-1A0A0J9YXX1 117 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms