RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 MARVELD3Q96A59 401 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 CITED2Q99967 270 aaPredicted RBP8.58□□□□□ -1.04
COL6A3-201ENST00000295550 TCF20Q9UGU0 1960 aaKnown RBP8.58□□□□□ -1.04
COL6A3-201ENST00000295550 TRGV8A0A0C4DH27 118 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 IGKV1D-16P01601 117 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 IGHV4-34P06331 123 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 ATP6V0CP27449 155 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 CRYBA2P53672 197 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 DLX6P56179 175 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 IBA57Q5T440 356 aaKnown RBP8.58□□□□□ -1.04
COL6A3-201ENST00000295550 C7orf71A4D174 169 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 NDUFB4O95168 129 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 GAPDHP04406 335 aaKnown RBP8.58□□□□□ -1.04
COL6A3-201ENST00000295550 FCGR3AP08637 254 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 PSG2P11465 335 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 RAC3P60763 192 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 CTAG1AP78358 180 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 SERF2P84101 59 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 PTPMT1Q8WUK0 201 aaPredicted RBP8.58□□□□□ -1.04
COL6A3-201ENST00000295550 TRGV5A0A0B4J1U4 118 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 PIGYQ3MUY2 71 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 HARBI1Q96MB7 349 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 WFDC6Q9BQY6 131 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 NEUROG3Q9Y4Z2 214 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 EML2O95834 649 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 C9orf50Q5SZB4 431 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 Q6ZS52 159 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 TDHQ8IZJ6 230 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 OR1L8Q8NGR8 309 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 NUDT16L1Q9BRJ7 211 aaKnown RBP8.58□□□□□ -1.04
COL6A3-201ENST00000295550 CLEC1BQ9P126 229 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 KLHDC2Q9Y2U9 406 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 CDX4O14627 284 aaPredicted RBP8.58□□□□□ -1.04
COL6A3-201ENST00000295550 PPP1R17O96001 155 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 RRN3P1Q2M238 152 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 TM4SF20Q53R12 229 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 C2orf83Q53S99 150 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 OR8G5Q8NG78 346 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 ZFP64Q9NPA5 681 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 DTX4Q9Y2E6 619 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 SS18L1O75177 396 aaPredicted RBP8.58□□□□□ -1.04
COL6A3-201ENST00000295550 SRIP30626 198 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 RBM11P57052 281 aaKnown RBP8.58□□□□□ -1.04
COL6A3-201ENST00000295550 ASB5Q8WWX0 329 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 SMOC1Q9H4F8 434 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 WNT16Q9UBV4 365 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 PILRAQ9UKJ1 303 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 SF3B6Q9Y3B4 125 aaKnown RBP8.58□□□□□ -1.04
COL6A3-201ENST00000295550 PHLDA3Q9Y5J5 127 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 FHL5Q5TD97 284 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 FOXC2Q99958 501 aa8.58□□□□□ -1.04
COL6A3-201ENST00000295550 ARL14EPLP0DKL9 152 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 WDR25Q64LD2 544 aaPredicted RBP8.57□□□□□ -1.04
COL6A3-201ENST00000295550 IGKV3-7A0A075B6H7 116 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 A0A0B4J293 547 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 C4orf51C9J302 202 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 HYPMO75409 117 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 LSM6P62312 80 aaKnown RBP8.57□□□□□ -1.04
COL6A3-201ENST00000295550 CCL7P80098 99 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 TSPAN2O60636 221 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 OR4A8P0C604 315 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 RELQ04864 619 aaPredicted RBP8.57□□□□□ -1.04
COL6A3-201ENST00000295550 C9orf40Q8IXQ3 194 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 KLK13Q9UKR3 277 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 DSCAML1Q8TD84 2053 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 TRAV38-1A0A0B4J264 116 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 TMIGD3P0DMS9 266 aaPredicted RBP8.57□□□□□ -1.04
COL6A3-201ENST00000295550 CXCL2P19875 107 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 NXPH1P58417 271 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 Q8WTZ3 238 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 CDX1P47902 265 aaPredicted RBP8.57□□□□□ -1.04
COL6A3-201ENST00000295550 ZNF721Q8TF20 911 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 TMEM45BQ96B21 275 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 KCNE5Q9UJ90 142 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 SOCS1O15524 211 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 MPZL1O95297 269 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 SIGLEC5O15389 551 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 NAAAQ02083 359 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 SIGLEC14Q08ET2 396 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 DCAF12L2Q5VW00 463 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 TMEM52Q8NDY8 209 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 ZNF414Q96IQ9 312 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 EFNB2P52799 333 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 OR2Y1Q8NGV0 311 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 HDHD3Q9BSH5 251 aaPredicted RBP8.57□□□□□ -1.04
COL6A3-201ENST00000295550 CHST5Q9GZS9 411 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 TREM2Q9NZC2 230 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 TRBV9A0A0B4J1U6 114 aa8.57□□□□□ -1.04
COL6A3-201ENST00000295550 APOBEC4Q8WW27 367 aaKnown RBP8.57□□□□□ -1.04
COL6A3-201ENST00000295550 A1L4Q6 167 aa8.56□□□□□ -1.04
COL6A3-201ENST00000295550 VSIG10L2P0DP72 767 aa8.56□□□□□ -1.04
COL6A3-201ENST00000295550 TRA2AQ13595 282 aaKnown RBP eCLIP8.56□□□□□ -1.04
COL6A3-201ENST00000295550 TMEM211Q6ICI0 200 aa8.56□□□□□ -1.04
COL6A3-201ENST00000295550 FOXQ1Q9C009 403 aa8.56□□□□□ -1.04
COL6A3-201ENST00000295550 RAB1BQ9H0U4 201 aa8.56□□□□□ -1.04
COL6A3-201ENST00000295550 GLRX2Q9NS18 164 aa8.56□□□□□ -1.04
COL6A3-201ENST00000295550 OR5A1Q8NGJ0 315 aa8.56□□□□□ -1.04
COL6A3-201ENST00000295550 OR10AC1Q8NH08 325 aa8.56□□□□□ -1.04
COL6A3-201ENST00000295550 SLC25A38Q96DW6 304 aa8.56□□□□□ -1.04
COL6A3-201ENST00000295550 ZNF441Q8N8Z8 693 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms