RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 LYNX1P0DP58 116 aa9.53□□□□□ -0.88
CUX1-202ENST00000292538 BRWD1-AS2P59051 145 aa9.53□□□□□ -0.88
CUX1-202ENST00000292538 HAGHQ16775 308 aa9.53□□□□□ -0.88
CUX1-202ENST00000292538 AKR1C8PQ5T2L2 129 aa9.53□□□□□ -0.88
CUX1-202ENST00000292538 PRAMEF5Q5TYX0 476 aa9.53□□□□□ -0.88
CUX1-202ENST00000292538 CBLN2Q8IUK8 224 aa9.53□□□□□ -0.88
CUX1-202ENST00000292538 RBKSQ9H477 322 aa9.53□□□□□ -0.88
CUX1-202ENST00000292538 TRGV10A0A0A0MS01 117 aa9.52□□□□□ -0.88
CUX1-202ENST00000292538 C1QTNF9BB2RNN3 333 aa9.52□□□□□ -0.88
CUX1-202ENST00000292538 ZG16O60844 167 aa9.52□□□□□ -0.88
CUX1-202ENST00000292538 PITX3O75364 302 aa9.52□□□□□ -0.88
CUX1-202ENST00000292538 MMP23AO75900 390 aa9.52□□□□□ -0.88
CUX1-202ENST00000292538 OPN1MWP04001 364 aa9.52□□□□□ -0.88
CUX1-202ENST00000292538 OPN1MW2P0DN77 364 aa9.52□□□□□ -0.88
CUX1-202ENST00000292538 OPN1MW3P0DN78 364 aa9.52□□□□□ -0.88
CUX1-202ENST00000292538 CCL20P78556 96 aa9.52□□□□□ -0.88
CUX1-202ENST00000292538 LY6DQ14210 128 aa9.52□□□□□ -0.88
CUX1-202ENST00000292538 BTNL8Q6UX41 500 aa9.52□□□□□ -0.88
CUX1-202ENST00000292538 CD300LFQ8TDQ1 290 aa9.52□□□□□ -0.88
CUX1-202ENST00000292538 RAB40CQ96S21 281 aa9.52□□□□□ -0.88
CUX1-202ENST00000292538 RARRES2Q99969 163 aa9.52□□□□□ -0.88
CUX1-202ENST00000292538 AGMATQ9BSE5 352 aa9.52□□□□□ -0.88
CUX1-202ENST00000292538 ELOVL5Q9NYP7 299 aa9.52□□□□□ -0.88
CUX1-202ENST00000292538 ZMAT5Q9UDW3 170 aaKnown RBP9.52□□□□□ -0.88
CUX1-202ENST00000292538 UBE2L5PA0A1B0GUS4 154 aa9.52□□□□□ -0.89
CUX1-202ENST00000292538 MARCH11A6NNE9 402 aa9.52□□□□□ -0.89
CUX1-202ENST00000292538 C17orf100A8MU93 164 aa9.52□□□□□ -0.89
CUX1-202ENST00000292538 LHBP01229 141 aa9.52□□□□□ -0.89
CUX1-202ENST00000292538 SULT1A1P50225 295 aa9.52□□□□□ -0.89
CUX1-202ENST00000292538 IL34Q6ZMJ4 242 aa9.52□□□□□ -0.89
CUX1-202ENST00000292538 ETV3LQ6ZN32 361 aa9.52□□□□□ -0.89
CUX1-202ENST00000292538 ZNF295-AS1Q8N0V1 137 aa9.52□□□□□ -0.89
CUX1-202ENST00000292538 EDARADDQ8WWZ3 215 aa9.52□□□□□ -0.89
CUX1-202ENST00000292538 ATP5SQ99766 215 aa9.52□□□□□ -0.89
CUX1-202ENST00000292538 PARP11Q9NR21 331 aa9.52□□□□□ -0.89
CUX1-202ENST00000292538 MMP24Q9Y5R2 645 aa9.52□□□□□ -0.89
CUX1-202ENST00000292538 ADH4P08319 380 aa9.52□□□□□ -0.89
CUX1-202ENST00000292538 TNFRSF9Q07011 255 aa9.52□□□□□ -0.89
CUX1-202ENST00000292538 MSMO1Q15800 293 aa9.52□□□□□ -0.89
CUX1-202ENST00000292538 UQCC3Q6UW78 93 aa9.52□□□□□ -0.89
CUX1-202ENST00000292538 SVBPQ8N300 66 aa9.52□□□□□ -0.89
CUX1-202ENST00000292538 OR10Z1Q8NGY1 313 aa9.52□□□□□ -0.89
CUX1-202ENST00000292538 LSM10Q969L4 123 aaKnown RBP9.52□□□□□ -0.89
CUX1-202ENST00000292538 R3HDM4Q96D70 268 aa9.52□□□□□ -0.89
CUX1-202ENST00000292538 C11orf1Q9H5F2 150 aa9.52□□□□□ -0.89
CUX1-202ENST00000292538 OR6C3Q9NZP0 311 aa9.52□□□□□ -0.89
CUX1-202ENST00000292538 TMEM238LA0A1B0GVL6 79 aa9.51□□□□□ -0.89
CUX1-202ENST00000292538 LRRC30A6NM36 301 aa9.51□□□□□ -0.89
CUX1-202ENST00000292538 PROP1O75360 226 aa9.51□□□□□ -0.89
CUX1-202ENST00000292538 C1QTNF9P0C862 333 aa9.51□□□□□ -0.89
CUX1-202ENST00000292538 TNFRSF1AP19438 455 aa9.51□□□□□ -0.89
CUX1-202ENST00000292538 REG1BP48304 166 aa9.51□□□□□ -0.89
CUX1-202ENST00000292538 GUK1Q16774 197 aa9.51□□□□□ -0.89
CUX1-202ENST00000292538 C14orf79Q96F83 325 aa9.51□□□□□ -0.89
CUX1-202ENST00000292538 ZNF665Q9H7R5 613 aa9.51□□□□□ -0.89
CUX1-202ENST00000292538 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.51□□□□□ -0.89
CUX1-202ENST00000292538 ARFGEF3Q5TH69 2177 aa9.51□□□□□ -0.89
CUX1-202ENST00000292538 DSCAMO60469 2012 aa9.51□□□□□ -0.89
CUX1-202ENST00000292538 TOR1AO14656 332 aa9.51□□□□□ -0.89
CUX1-202ENST00000292538 H2AFB1P0C5Y9 115 aa9.51□□□□□ -0.89
CUX1-202ENST00000292538 CCL3L1P16619 93 aa9.51□□□□□ -0.89
CUX1-202ENST00000292538 NPBWR1P48145 328 aa9.51□□□□□ -0.89
CUX1-202ENST00000292538 FGF8P55075 233 aaPredicted RBP9.51□□□□□ -0.89
CUX1-202ENST00000292538 LCN15Q6UWW0 184 aa9.51□□□□□ -0.89
CUX1-202ENST00000292538 C1orf229Q6ZS94 237 aaPredicted RBP9.51□□□□□ -0.89
CUX1-202ENST00000292538 ZNF561Q8N587 486 aa9.51□□□□□ -0.89
CUX1-202ENST00000292538 GAFA1Q96PS6 74 aa9.51□□□□□ -0.89
CUX1-202ENST00000292538 S1PR3Q99500 378 aa9.51□□□□□ -0.89
CUX1-202ENST00000292538 QTRT1Q9BXR0 403 aaKnown RBP9.51□□□□□ -0.89
CUX1-202ENST00000292538 SMCO3A2RU48 225 aa9.5□□□□□ -0.89
CUX1-202ENST00000292538 M0R036 132 aa9.5□□□□□ -0.89
CUX1-202ENST00000292538 FBP1P09467 338 aa9.5□□□□□ -0.89
CUX1-202ENST00000292538 DLX1P56177 255 aa9.5□□□□□ -0.89
CUX1-202ENST00000292538 VSIRQ9H7M9 311 aa9.5□□□□□ -0.89
CUX1-202ENST00000292538 SLC25A10Q9UBX3 287 aaPredicted RBP9.5□□□□□ -0.89
CUX1-202ENST00000292538 WSB1Q9Y6I7 421 aa9.5□□□□□ -0.89
CUX1-202ENST00000292538 DCHS2Q6V1P9 2916 aa9.5□□□□□ -0.89
CUX1-202ENST00000292538 TRAV3A0A0B4J244 114 aa9.5□□□□□ -0.89
CUX1-202ENST00000292538 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.5□□□□□ -0.89
CUX1-202ENST00000292538 VSTM5A8MXK1 200 aa9.5□□□□□ -0.89
CUX1-202ENST00000292538 E7EQL1 145 aa9.5□□□□□ -0.89
CUX1-202ENST00000292538 DUTP33316 252 aaKnown RBP9.5□□□□□ -0.89
CUX1-202ENST00000292538 LOXL3P58215 753 aa9.5□□□□□ -0.89
CUX1-202ENST00000292538 BPIFB3P59826 476 aa9.5□□□□□ -0.89
CUX1-202ENST00000292538 RPL31P62899 125 aaKnown RBP9.5□□□□□ -0.89
CUX1-202ENST00000292538 C17orf58Q2M2W7 97 aa9.5□□□□□ -0.89
CUX1-202ENST00000292538 CT45A1Q5HYN5 189 aa9.5□□□□□ -0.89
CUX1-202ENST00000292538 LYPD2Q6UXB3 125 aa9.5□□□□□ -0.89
CUX1-202ENST00000292538 ARL6IP6Q8N6S5 226 aa9.5□□□□□ -0.89
CUX1-202ENST00000292538 CT45A3Q8NHU0 189 aa9.5□□□□□ -0.89
CUX1-202ENST00000292538 DTD1Q8TEA8 209 aa9.5□□□□□ -0.89
CUX1-202ENST00000292538 HSD17B10Q99714 261 aaKnown RBP9.5□□□□□ -0.89
CUX1-202ENST00000292538 EGLN1Q9GZT9 426 aa9.5□□□□□ -0.89
CUX1-202ENST00000292538 KBTBD11-OT1A0A1B0GTJ5 212 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 LY6HO94772 140 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 OR9G9P0C7N8 305 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 SNCAP37840 140 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 DVL1P1P54792 670 aaPredicted RBP9.49□□□□□ -0.89
CUX1-202ENST00000292538 HBG1P69891 147 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 HBG2P69892 147 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms