RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 ZNF251Q9BRH9 671 aa16.43■□□□□ 0.22
CLN3-250ENST00000636839 PDCD10Q9BUL8 212 aa16.43■□□□□ 0.22
CLN3-250ENST00000636839 RAB18Q9NP72 206 aa16.43■□□□□ 0.22
CLN3-250ENST00000636839 M0R1X1 148 aa16.43■□□□□ 0.22
CLN3-250ENST00000636839 CDS2O95674 445 aa16.43■□□□□ 0.22
CLN3-250ENST00000636839 IGKV1-39P01597 117 aa16.43■□□□□ 0.22
CLN3-250ENST00000636839 IGKV1D-39P04432 117 aa16.43■□□□□ 0.22
CLN3-250ENST00000636839 S100GP29377 79 aa16.43■□□□□ 0.22
CLN3-250ENST00000636839 SSTR2P30874 369 aa16.43■□□□□ 0.22
CLN3-250ENST00000636839 NCR3LG1Q68D85 454 aa16.43■□□□□ 0.22
CLN3-250ENST00000636839 CLEC2AQ6UVW9 174 aa16.43■□□□□ 0.22
CLN3-250ENST00000636839 LGI3Q8N145 548 aa16.43■□□□□ 0.22
CLN3-250ENST00000636839 PIMREGQ9BSJ6 248 aa16.43■□□□□ 0.22
CLN3-250ENST00000636839 LPAR2Q9HBW0 351 aa16.43■□□□□ 0.22
CLN3-250ENST00000636839 ANKRD17O75179 2603 aaKnown RBP16.42■□□□□ 0.22
CLN3-250ENST00000636839 VWC2LB2RUY7 222 aa16.42■□□□□ 0.22
CLN3-250ENST00000636839 LIPFP07098 398 aa16.42■□□□□ 0.22
CLN3-250ENST00000636839 LRRC37A5PQ49AS3 106 aa16.42■□□□□ 0.22
CLN3-250ENST00000636839 LRTM2Q8N967 370 aa16.42■□□□□ 0.22
CLN3-250ENST00000636839 TCTEX1D2Q8WW35 142 aa16.42■□□□□ 0.22
CLN3-250ENST00000636839 TMEM56Q96MV1 263 aa16.42■□□□□ 0.22
CLN3-250ENST00000636839 GSX2Q9BZM3 304 aa16.42■□□□□ 0.22
CLN3-250ENST00000636839 TMEM56-RWDD3S4R434 201 aa16.42■□□□□ 0.22
CLN3-250ENST00000636839 FAM157AC9JC47 383 aa16.41■□□□□ 0.22
CLN3-250ENST00000636839 ITGB1BP1O14713 200 aa16.41■□□□□ 0.22
CLN3-250ENST00000636839 C1QBP02746 253 aa16.41■□□□□ 0.22
CLN3-250ENST00000636839 DIAPH2-AS1Q14236 149 aa16.41■□□□□ 0.22
CLN3-250ENST00000636839 IZUMO4Q1ZYL8 232 aa16.41■□□□□ 0.22
CLN3-250ENST00000636839 GSG1LQ6UXU4 331 aa16.41■□□□□ 0.22
CLN3-250ENST00000636839 NOXA1Q86UR1 476 aa16.41■□□□□ 0.22
CLN3-250ENST00000636839 ZNF695Q8IW36 515 aa16.41■□□□□ 0.22
CLN3-250ENST00000636839 ABHD12Q8N2K0 398 aa16.41■□□□□ 0.22
CLN3-250ENST00000636839 ZBTB34Q8NCN2 500 aa16.41■□□□□ 0.22
CLN3-250ENST00000636839 GRPEL2Q8TAA5 225 aa16.41■□□□□ 0.22
CLN3-250ENST00000636839 TMEM133Q9H2Q1 129 aa16.41■□□□□ 0.22
CLN3-250ENST00000636839 BARX1Q9HBU1 254 aaPredicted RBP16.41■□□□□ 0.22
CLN3-250ENST00000636839 SIRT7Q9NRC8 400 aa16.41■□□□□ 0.22
CLN3-250ENST00000636839 GSKIPQ9P0R6 139 aa16.41■□□□□ 0.22
CLN3-250ENST00000636839 SESN1Q9Y6P5 492 aa16.41■□□□□ 0.22
CLN3-250ENST00000636839 PAX1P15863 534 aa16.41■□□□□ 0.22
CLN3-250ENST00000636839 RPA2P15927 270 aa16.41■□□□□ 0.22
CLN3-250ENST00000636839 DUTP33316 252 aaKnown RBP16.41■□□□□ 0.22
CLN3-250ENST00000636839 RAB7AP51149 207 aa16.41■□□□□ 0.22
CLN3-250ENST00000636839 RAP2BP61225 183 aa16.41■□□□□ 0.22
CLN3-250ENST00000636839 BOLA1Q9Y3E2 137 aa16.41■□□□□ 0.22
CLN3-250ENST00000636839 FASNP49327 2511 aaKnown RBP16.4■□□□□ 0.22
CLN3-250ENST00000636839 J3QR06 171 aa16.4■□□□□ 0.22
CLN3-250ENST00000636839 SERPINE2P07093 398 aa16.4■□□□□ 0.22
CLN3-250ENST00000636839 COX7A1P24310 79 aa16.4■□□□□ 0.22
CLN3-250ENST00000636839 GZMKP49863 264 aa16.4■□□□□ 0.22
CLN3-250ENST00000636839 ZNF816Q0VGE8 651 aaPredicted RBP16.4■□□□□ 0.22
CLN3-250ENST00000636839 TMEM30BQ3MIR4 351 aa16.4■□□□□ 0.22
CLN3-250ENST00000636839 TRAV14DV4A0A0A6YYC5 116 aa16.4■□□□□ 0.22
CLN3-250ENST00000636839 A0A0G2JRQ6 117 aa16.4■□□□□ 0.22
CLN3-250ENST00000636839 RAB29O14966 203 aa16.4■□□□□ 0.22
CLN3-250ENST00000636839 DNASE1P24855 282 aa16.4■□□□□ 0.22
CLN3-250ENST00000636839 PAX2Q02962 417 aa16.4■□□□□ 0.22
CLN3-250ENST00000636839 SRSF4Q08170 494 aaKnown RBP16.4■□□□□ 0.22
CLN3-250ENST00000636839 A0A087X0M5 115 aa16.39■□□□□ 0.21
CLN3-250ENST00000636839 A0A1B0GX30 115 aa16.39■□□□□ 0.21
CLN3-250ENST00000636839 LPAR6P43657 344 aa16.39■□□□□ 0.21
CLN3-250ENST00000636839 REG1BP48304 166 aa16.39■□□□□ 0.21
CLN3-250ENST00000636839 IAH1Q2TAA2 248 aaPredicted RBP16.39■□□□□ 0.21
CLN3-250ENST00000636839 PDZD9Q8IXQ8 264 aa16.39■□□□□ 0.21
CLN3-250ENST00000636839 SPAG16Q8N0X2 631 aa16.39■□□□□ 0.21
CLN3-250ENST00000636839 PPP1R1CQ8WVI7 109 aa16.39■□□□□ 0.21
CLN3-250ENST00000636839 WNK2Q9Y3S1 2297 aa16.39■□□□□ 0.21
CLN3-250ENST00000636839 IGHV2-26A0A0B4J1V2 119 aa16.38■□□□□ 0.21
CLN3-250ENST00000636839 MSMO1Q15800 293 aa16.38■□□□□ 0.21
CLN3-250ENST00000636839 RBPMSQ93062 196 aaKnown RBP16.38■□□□□ 0.21
CLN3-250ENST00000636839 HSD17B10Q99714 261 aaKnown RBP16.38■□□□□ 0.21
CLN3-250ENST00000636839 LIN7CQ9NUP9 197 aaKnown RBP16.38■□□□□ 0.21
CLN3-250ENST00000636839 NAV2Q8IVL1 2488 aa16.38■□□□□ 0.21
CLN3-250ENST00000636839 KLRD1Q13241 179 aa16.38■□□□□ 0.21
CLN3-250ENST00000636839 CLEC12BQ2HXU8 276 aa16.38■□□□□ 0.21
CLN3-250ENST00000636839 ZNF66Q6ZN08 573 aa16.38■□□□□ 0.21
CLN3-250ENST00000636839 OR10X1Q8NGY0 326 aa16.38■□□□□ 0.21
CLN3-250ENST00000636839 C2orf50Q96LR7 162 aa16.38■□□□□ 0.21
CLN3-250ENST00000636839 ABCA2Q9BZC7 2435 aa16.38■□□□□ 0.21
CLN3-250ENST00000636839 A0A1W2PPH5 198 aa16.37■□□□□ 0.21
CLN3-250ENST00000636839 NDUFS8O00217 210 aa16.37■□□□□ 0.21
CLN3-250ENST00000636839 KCNAB3O43448 404 aa16.37■□□□□ 0.21
CLN3-250ENST00000636839 S1PR2O95136 353 aa16.37■□□□□ 0.21
CLN3-250ENST00000636839 IFNA21P01568 189 aa16.37■□□□□ 0.21
CLN3-250ENST00000636839 IGKV1-5P01602 117 aa16.37■□□□□ 0.21
CLN3-250ENST00000636839 PNKDQ8N490 385 aa16.37■□□□□ 0.21
CLN3-250ENST00000636839 ZNF383Q8NA42 475 aa16.37■□□□□ 0.21
CLN3-250ENST00000636839 OR9G1Q8NH87 305 aa16.37■□□□□ 0.21
CLN3-250ENST00000636839 PLSCR3Q9NRY6 295 aa16.37■□□□□ 0.21
CLN3-250ENST00000636839 GAB2Q9UQC2 676 aa16.37■□□□□ 0.21
CLN3-250ENST00000636839 RNF212BA8MTL3 300 aa16.36■□□□□ 0.21
CLN3-250ENST00000636839 FCGR3BO75015 233 aa16.36■□□□□ 0.21
CLN3-250ENST00000636839 CT45A6P0DMU7 189 aa16.36■□□□□ 0.21
CLN3-250ENST00000636839 CT45A5P0DMU8 189 aa16.36■□□□□ 0.21
CLN3-250ENST00000636839 CT45A7P0DMV0 189 aa16.36■□□□□ 0.21
CLN3-250ENST00000636839 IL15RAQ13261 267 aa16.36■□□□□ 0.21
CLN3-250ENST00000636839 RAB39BQ96DA2 213 aa16.36■□□□□ 0.21
CLN3-250ENST00000636839 SRPXP78539 464 aa16.36■□□□□ 0.21
CLN3-250ENST00000636839 CATR1Q13166 79 aa16.36■□□□□ 0.21
CLN3-250ENST00000636839 LAMTOR1Q6IAA8 161 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms