RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 IGHV7-81A0A0B4J1V7 117 aa11.61□□□□□ -0.55
LINC00643-205ENST00000623219 SMIM30A4D0T7 59 aa11.61□□□□□ -0.55
LINC00643-205ENST00000623219 ATP6V0E1O15342 81 aa11.61□□□□□ -0.55
LINC00643-205ENST00000623219 RBBP9O75884 186 aa11.61□□□□□ -0.55
LINC00643-205ENST00000623219 RPLP1P05386 114 aaKnown RBP11.61□□□□□ -0.55
LINC00643-205ENST00000623219 PSMB8P28062 276 aa11.61□□□□□ -0.55
LINC00643-205ENST00000623219 MYCNOSP40205 109 aa11.61□□□□□ -0.55
LINC00643-205ENST00000623219 KCTD21Q4G0X4 260 aa11.61□□□□□ -0.55
LINC00643-205ENST00000623219 GLDNQ6ZMI3 551 aaPredicted RBP11.61□□□□□ -0.55
LINC00643-205ENST00000623219 MRPL41Q8IXM3 137 aaKnown RBP11.61□□□□□ -0.55
LINC00643-205ENST00000623219 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.61□□□□□ -0.55
LINC00643-205ENST00000623219 RITA1Q96K30 269 aa11.61□□□□□ -0.55
LINC00643-205ENST00000623219 KCTD7Q96MP8 289 aa11.61□□□□□ -0.55
LINC00643-205ENST00000623219 OR51J1Q9H342 316 aa11.61□□□□□ -0.55
LINC00643-205ENST00000623219 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.61□□□□□ -0.55
LINC00643-205ENST00000623219 AURKAIP1Q9NWT8 199 aaPredicted RBP11.61□□□□□ -0.55
LINC00643-205ENST00000623219 RDH8Q9NYR8 311 aa11.61□□□□□ -0.55
LINC00643-205ENST00000623219 A0A075B6Q4 140 aa11.6□□□□□ -0.55
LINC00643-205ENST00000623219 H7C2Y5 167 aa11.6□□□□□ -0.55
LINC00643-205ENST00000623219 RRHO14718 337 aa11.6□□□□□ -0.55
LINC00643-205ENST00000623219 SCGNO76038 276 aa11.6□□□□□ -0.55
LINC00643-205ENST00000623219 PRB2P02812 416 aaPredicted RBP11.6□□□□□ -0.55
LINC00643-205ENST00000623219 CDX1P47902 265 aaPredicted RBP11.6□□□□□ -0.55
LINC00643-205ENST00000623219 SRSF7Q16629 238 aaKnown RBP eCLIP11.6□□□□□ -0.55
LINC00643-205ENST00000623219 SFXN4Q6P4A7 337 aa11.6□□□□□ -0.55
LINC00643-205ENST00000623219 Q6ZS49 121 aa11.6□□□□□ -0.55
LINC00643-205ENST00000623219 OR8U1Q8NH10 309 aa11.6□□□□□ -0.55
LINC00643-205ENST00000623219 OR10J5Q8NHC4 309 aa11.6□□□□□ -0.55
LINC00643-205ENST00000623219 P2RX4Q99571 388 aa11.6□□□□□ -0.55
LINC00643-205ENST00000623219 RNF5Q99942 180 aa11.6□□□□□ -0.55
LINC00643-205ENST00000623219 CENPOQ9BU64 300 aa11.6□□□□□ -0.55
LINC00643-205ENST00000623219 ATG5Q9H1Y0 275 aa11.6□□□□□ -0.55
LINC00643-205ENST00000623219 PARP11Q9NR21 331 aa11.6□□□□□ -0.55
LINC00643-205ENST00000623219 RRP15Q9Y3B9 282 aaKnown RBP11.6□□□□□ -0.55
LINC00643-205ENST00000623219 COL7A1Q02388 2944 aa11.59□□□□□ -0.55
LINC00643-205ENST00000623219 TRBV6-7A0A0A0MS04 114 aa11.59□□□□□ -0.55
LINC00643-205ENST00000623219 BET1O15155 118 aa11.59□□□□□ -0.55
LINC00643-205ENST00000623219 SPDEFO95238 335 aa11.59□□□□□ -0.55
LINC00643-205ENST00000623219 APOA2P02652 100 aa11.59□□□□□ -0.55
LINC00643-205ENST00000623219 TFAP2AP05549 437 aa11.59□□□□□ -0.55
LINC00643-205ENST00000623219 GSTP1P09211 210 aaKnown RBP11.59□□□□□ -0.55
LINC00643-205ENST00000623219 DTYMKP23919 212 aa11.59□□□□□ -0.55
LINC00643-205ENST00000623219 PPIFP30405 207 aaKnown RBP11.59□□□□□ -0.55
LINC00643-205ENST00000623219 TALDO1P37837 337 aa11.59□□□□□ -0.55
LINC00643-205ENST00000623219 CRIP2P52943 208 aaPredicted RBP11.59□□□□□ -0.55
LINC00643-205ENST00000623219 ARFRP1Q13795 201 aa11.59□□□□□ -0.55
LINC00643-205ENST00000623219 PLGLAQ15195 96 aa11.59□□□□□ -0.55
LINC00643-205ENST00000623219 IGSF11Q5DX21 431 aa11.59□□□□□ -0.55
LINC00643-205ENST00000623219 LIN54Q6MZP7 749 aa11.59□□□□□ -0.55
LINC00643-205ENST00000623219 LCNL1Q6ZST4 164 aa11.59□□□□□ -0.55
LINC00643-205ENST00000623219 PDPNQ86YL7 162 aa11.59□□□□□ -0.55
LINC00643-205ENST00000623219 MRAPQ8TCY5 172 aa11.59□□□□□ -0.55
LINC00643-205ENST00000623219 MYOZ3Q8TDC0 251 aa11.59□□□□□ -0.55
LINC00643-205ENST00000623219 C4orf3Q8WVX3 66 aa11.59□□□□□ -0.55
LINC00643-205ENST00000623219 MCRIP2Q9BUT9 160 aaKnown RBP11.59□□□□□ -0.55
LINC00643-205ENST00000623219 OR2D2Q9H210 308 aa11.59□□□□□ -0.55
LINC00643-205ENST00000623219 OR51E2Q9H255 320 aa11.59□□□□□ -0.55
LINC00643-205ENST00000623219 DAPK2Q9UIK4 370 aa11.59□□□□□ -0.55
LINC00643-205ENST00000623219 TRAV41A0A0B4J266 112 aa11.58□□□□□ -0.56
LINC00643-205ENST00000623219 CCL24O00175 119 aa11.58□□□□□ -0.56
LINC00643-205ENST00000623219 PROP1O75360 226 aa11.58□□□□□ -0.56
LINC00643-205ENST00000623219 GSTT2P0CG29 244 aa11.58□□□□□ -0.56
LINC00643-205ENST00000623219 GSTT2BP0CG30 244 aa11.58□□□□□ -0.56
LINC00643-205ENST00000623219 SCAND1P57086 179 aa11.58□□□□□ -0.56
LINC00643-205ENST00000623219 NDPQ00604 133 aa11.58□□□□□ -0.56
LINC00643-205ENST00000623219 NEDD8Q15843 81 aa11.58□□□□□ -0.56
LINC00643-205ENST00000623219 DRAXINQ8NBI3 349 aaPredicted RBP11.58□□□□□ -0.56
LINC00643-205ENST00000623219 LGALS14Q8TCE9 139 aa11.58□□□□□ -0.56
LINC00643-205ENST00000623219 MAFIPQ8WZ33 124 aa11.58□□□□□ -0.56
LINC00643-205ENST00000623219 DPF1Q92782 380 aa11.58□□□□□ -0.56
LINC00643-205ENST00000623219 RAX2Q96IS3 184 aa11.58□□□□□ -0.56
LINC00643-205ENST00000623219 GINS4Q9BRT9 223 aa11.58□□□□□ -0.56
LINC00643-205ENST00000623219 FBXL15Q9H469 300 aa11.58□□□□□ -0.56
LINC00643-205ENST00000623219 ZNF230Q9UIE0 474 aaPredicted RBP11.58□□□□□ -0.56
LINC00643-205ENST00000623219 RNF150Q9ULK6 438 aa11.58□□□□□ -0.56
LINC00643-205ENST00000623219 G3V318 75 aa11.57□□□□□ -0.56
LINC00643-205ENST00000623219 M0R1X1 148 aa11.57□□□□□ -0.56
LINC00643-205ENST00000623219 IGLV1-40P01703 118 aa11.57□□□□□ -0.56
LINC00643-205ENST00000623219 IGKV1-16P04430 117 aa11.57□□□□□ -0.56
LINC00643-205ENST00000623219 CD36P16671 472 aa11.57□□□□□ -0.56
LINC00643-205ENST00000623219 SDC2P34741 201 aa11.57□□□□□ -0.56
LINC00643-205ENST00000623219 EGFEM1PQ0D2K5 195 aa11.57□□□□□ -0.56
LINC00643-205ENST00000623219 DEFB136Q30KP8 78 aa11.57□□□□□ -0.56
LINC00643-205ENST00000623219 ZNF660Q6AZW8 331 aaPredicted RBP11.57□□□□□ -0.56
LINC00643-205ENST00000623219 TCTEX1D1Q8N7M0 179 aa11.57□□□□□ -0.56
LINC00643-205ENST00000623219 ZNF383Q8NA42 475 aa11.57□□□□□ -0.56
LINC00643-205ENST00000623219 TSNAXQ99598 290 aaKnown RBP11.57□□□□□ -0.56
LINC00643-205ENST00000623219 GAB2Q9UQC2 676 aa11.57□□□□□ -0.56
LINC00643-205ENST00000623219 WSB1Q9Y6I7 421 aa11.57□□□□□ -0.56
LINC00643-205ENST00000623219 LOC100506127A0A0U1RQW1 187 aa11.56□□□□□ -0.56
LINC00643-205ENST00000623219 OR8U9P0C7N5 309 aa11.56□□□□□ -0.56
LINC00643-205ENST00000623219 SNRPBP14678 240 aaKnown RBP11.56□□□□□ -0.56
LINC00643-205ENST00000623219 PITPNAQ00169 270 aa11.56□□□□□ -0.56
LINC00643-205ENST00000623219 MXD1Q05195 221 aa11.56□□□□□ -0.56
LINC00643-205ENST00000623219 ECSCRQ19T08 205 aa11.56□□□□□ -0.56
LINC00643-205ENST00000623219 C19orf54Q5BKX5 351 aa11.56□□□□□ -0.56
LINC00643-205ENST00000623219 HACD4Q5VWC8 232 aa11.56□□□□□ -0.56
LINC00643-205ENST00000623219 TMEM65Q6PI78 240 aa11.56□□□□□ -0.56
LINC00643-205ENST00000623219 MINDY2Q8NBR6 621 aa11.56□□□□□ -0.56
LINC00643-205ENST00000623219 UBE2E2Q96LR5 201 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms