RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 ATXN7O15265 892 aaPredicted RBP8.88□□□□□ -0.99
CUX1-221ENST00000622516 SEC11BP0C7V7 166 aa8.88□□□□□ -0.99
CUX1-221ENST00000622516 EDDM3BP56851 147 aa8.88□□□□□ -0.99
CUX1-221ENST00000622516 CCL20P78556 96 aa8.88□□□□□ -0.99
CUX1-221ENST00000622516 TIMM23BQ5SRD1 257 aa8.88□□□□□ -0.99
CUX1-221ENST00000622516 FAM180AQ6UWF9 173 aa8.88□□□□□ -0.99
CUX1-221ENST00000622516 GCSAMQ8N6F7 178 aa8.88□□□□□ -0.99
CUX1-221ENST00000622516 LEAP2Q969E1 77 aa8.88□□□□□ -0.99
CUX1-221ENST00000622516 C19orf12Q9NSK7 152 aa8.88□□□□□ -0.99
CUX1-221ENST00000622516 PSG11Q9UQ72 335 aa8.88□□□□□ -0.99
CUX1-221ENST00000622516 FBXO7Q9Y3I1 522 aa8.88□□□□□ -0.99
CUX1-221ENST00000622516 CLEC18AA5D8T8 446 aa8.88□□□□□ -0.99
CUX1-221ENST00000622516 C17orf98A8MV24 154 aa8.88□□□□□ -0.99
CUX1-221ENST00000622516 NPIPB11E5RHQ5 1161 aa8.88□□□□□ -0.99
CUX1-221ENST00000622516 MKRN2OSH3BPM6 223 aa8.88□□□□□ -0.99
CUX1-221ENST00000622516 PITX3O75364 302 aa8.88□□□□□ -0.99
CUX1-221ENST00000622516 CLEC18CQ8NCF0 446 aa8.88□□□□□ -0.99
CUX1-221ENST00000622516 ITLN1Q8WWA0 313 aa8.88□□□□□ -0.99
CUX1-221ENST00000622516 MRPL37Q9BZE1 423 aaKnown RBP8.88□□□□□ -0.99
CUX1-221ENST00000622516 GSN-AS1Q9NRJ2 163 aa8.88□□□□□ -0.99
CUX1-221ENST00000622516 ASH1LQ9NR48 2969 aaKnown RBP8.88□□□□□ -0.99
CUX1-221ENST00000622516 ARFGEF3Q5TH69 2177 aa8.87□□□□□ -0.99
CUX1-221ENST00000622516 CRYABP02511 175 aaKnown RBP8.87□□□□□ -0.99
CUX1-221ENST00000622516 KLF3P57682 345 aaPredicted RBP8.87□□□□□ -0.99
CUX1-221ENST00000622516 BRWD1-AS2P59051 145 aa8.87□□□□□ -0.99
CUX1-221ENST00000622516 ARL16Q0P5N6 197 aa8.87□□□□□ -0.99
CUX1-221ENST00000622516 SLC35E4Q6ICL7 350 aa8.87□□□□□ -0.99
CUX1-221ENST00000622516 TCTEX1D2Q8WW35 142 aa8.87□□□□□ -0.99
CUX1-221ENST00000622516 C20orf24Q9BUV8 137 aa8.87□□□□□ -0.99
CUX1-221ENST00000622516 SCNM1Q9BWG6 230 aa8.87□□□□□ -0.99
CUX1-221ENST00000622516 SLC25A31Q9H0C2 315 aa8.87□□□□□ -0.99
CUX1-221ENST00000622516 CSMD1Q96PZ7 3565 aa8.87□□□□□ -0.99
CUX1-221ENST00000622516 A0A1B0GU03 582 aa8.87□□□□□ -0.99
CUX1-221ENST00000622516 A0A1W2PPE3 182 aa8.87□□□□□ -0.99
CUX1-221ENST00000622516 SPANXN5Q5MJ07 72 aa8.87□□□□□ -0.99
CUX1-221ENST00000622516 DOLPP1Q86YN1 238 aa8.87□□□□□ -0.99
CUX1-221ENST00000622516 IL22RA2Q969J5 263 aa8.87□□□□□ -0.99
CUX1-221ENST00000622516 RARRES2Q99969 163 aa8.87□□□□□ -0.99
CUX1-221ENST00000622516 KCNJ16Q9NPI9 418 aa8.87□□□□□ -0.99
CUX1-221ENST00000622516 LIN7CQ9NUP9 197 aaKnown RBP8.87□□□□□ -0.99
CUX1-221ENST00000622516 A0A0G2JNJ9 132 aa8.86□□□□□ -0.99
CUX1-221ENST00000622516 DUXBA0A1W2PPF3 345 aa8.86□□□□□ -0.99
CUX1-221ENST00000622516 LINC00473A8K010 186 aa8.86□□□□□ -0.99
CUX1-221ENST00000622516 A8MXE2 369 aa8.86□□□□□ -0.99
CUX1-221ENST00000622516 SYNGR2O43760 224 aa8.86□□□□□ -0.99
CUX1-221ENST00000622516 S1PR2O95136 353 aa8.86□□□□□ -0.99
CUX1-221ENST00000622516 CD5P06127 495 aa8.86□□□□□ -0.99
CUX1-221ENST00000622516 SNCAP37840 140 aa8.86□□□□□ -0.99
CUX1-221ENST00000622516 ZNF266Q14584 549 aa8.86□□□□□ -0.99
CUX1-221ENST00000622516 GUK1Q16774 197 aa8.86□□□□□ -0.99
CUX1-221ENST00000622516 SLC25A24Q6NUK1 477 aa8.86□□□□□ -0.99
CUX1-221ENST00000622516 CLEC2AQ6UVW9 174 aa8.86□□□□□ -0.99
CUX1-221ENST00000622516 THNSL2Q86YJ6 484 aa8.86□□□□□ -0.99
CUX1-221ENST00000622516 SPAG16Q8N0X2 631 aa8.86□□□□□ -0.99
CUX1-221ENST00000622516 ZNF645Q8N7E2 425 aa8.86□□□□□ -0.99
CUX1-221ENST00000622516 FAM57AQ8TBR7 257 aa8.86□□□□□ -0.99
CUX1-221ENST00000622516 RSG1Q9BU20 258 aa8.86□□□□□ -0.99
CUX1-221ENST00000622516 Q9UFV3 132 aa8.86□□□□□ -0.99
CUX1-221ENST00000622516 ZNF737O75373 536 aa8.86□□□□□ -0.99
CUX1-221ENST00000622516 CYB5R3P00387 301 aaPredicted RBP8.86□□□□□ -0.99
CUX1-221ENST00000622516 CCKARP32238 428 aa8.86□□□□□ -0.99
CUX1-221ENST00000622516 TIMP3P35625 211 aa8.86□□□□□ -0.99
CUX1-221ENST00000622516 CEBPGP53567 150 aa8.86□□□□□ -0.99
CUX1-221ENST00000622516 WFDC8Q8IUA0 241 aa8.86□□□□□ -0.99
CUX1-221ENST00000622516 PSENENQ9NZ42 101 aa8.86□□□□□ -0.99
CUX1-221ENST00000622516 HCFC1P51610 2035 aa8.86□□□□□ -0.99
CUX1-221ENST00000622516 SRRM5B3KS81 715 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 RBMXL2O75526 392 aaKnown RBP8.85□□□□□ -0.99
CUX1-221ENST00000622516 ACAA1P09110 424 aaPredicted RBP8.85□□□□□ -0.99
CUX1-221ENST00000622516 GLRXP35754 106 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 RAB13P51153 203 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 DVL1P1P54792 670 aaPredicted RBP8.85□□□□□ -0.99
CUX1-221ENST00000622516 NKX6-1P78426 367 aaPredicted RBP8.85□□□□□ -0.99
CUX1-221ENST00000622516 Q8NA96 180 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 SNRNP40Q96DI7 357 aaKnown RBP8.85□□□□□ -0.99
CUX1-221ENST00000622516 MEGF10Q96KG7 1140 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 SEC11CQ9BY50 192 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 BIN3Q9NQY0 253 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 GNG12Q9UBI6 72 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 SPTBN1Q01082 2364 aaKnown RBP8.85□□□□□ -0.99
CUX1-221ENST00000622516 FAM157AC9JC47 383 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 CD55P08174 381 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 OR13C7P0DN81 318 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 ERVFRD-1P60508 538 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 RPL23AP62750 156 aaKnown RBP8.85□□□□□ -0.99
CUX1-221ENST00000622516 CCL8P80075 99 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 OR8G2PQ6IF36 304 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 SSX9Q7RTT3 188 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 SPACA3Q8IXA5 215 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 LYPD6BQ8NI32 183 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 NANPQ8TBE9 248 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 NUDT19A8MXV4 375 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 K7N7A8 449 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 CLDN1O95832 211 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 FAM87AP0C7U9 286 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 CEACAM8P31997 349 aaPredicted RBP8.85□□□□□ -0.99
CUX1-221ENST00000622516 ZNF134P52741 427 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 C10orf91Q5T1B1 145 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 VKORC1L1Q8N0U8 176 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 PRR7Q8TB68 274 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms