RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 ABHD14AQ9BUJ0 271 aa13.14□□□□□ -0.31
CPSF1-213ENST00000620219 MUC1P15941 1255 aaPredicted RBP13.14□□□□□ -0.31
CPSF1-213ENST00000620219 FAM76BQ5HYJ3 339 aa13.14□□□□□ -0.31
CPSF1-213ENST00000620219 AKR1C8PQ5T2L2 129 aa13.14□□□□□ -0.31
CPSF1-213ENST00000620219 H1FOOQ8IZA3 346 aaPredicted RBP13.14□□□□□ -0.31
CPSF1-213ENST00000620219 ZNF561Q8N587 486 aa13.14□□□□□ -0.31
CPSF1-213ENST00000620219 LHFPL5Q8TAF8 219 aa13.14□□□□□ -0.31
CPSF1-213ENST00000620219 GNB2P62879 340 aa13.13□□□□□ -0.31
CPSF1-213ENST00000620219 NHLH2Q02577 135 aa13.13□□□□□ -0.31
CPSF1-213ENST00000620219 FAM213BQ8TBF2 198 aa13.13□□□□□ -0.31
CPSF1-213ENST00000620219 SDSLQ96GA7 329 aa13.13□□□□□ -0.31
CPSF1-213ENST00000620219 POM121Q96HA1 1249 aa13.13□□□□□ -0.31
CPSF1-213ENST00000620219 EIF5A2Q9GZV4 153 aaKnown RBP13.13□□□□□ -0.31
CPSF1-213ENST00000620219 A0A1W2PPH5 198 aa13.13□□□□□ -0.31
CPSF1-213ENST00000620219 CLEC18AA5D8T8 446 aa13.13□□□□□ -0.31
CPSF1-213ENST00000620219 CLEC18CQ8NCF0 446 aa13.13□□□□□ -0.31
CPSF1-213ENST00000620219 ARFGEF3Q5TH69 2177 aa13.13□□□□□ -0.31
CPSF1-213ENST00000620219 GPR37O15354 613 aa13.13□□□□□ -0.31
CPSF1-213ENST00000620219 GPR6P46095 362 aaPredicted RBP13.13□□□□□ -0.31
CPSF1-213ENST00000620219 F2RL1P55085 397 aa13.13□□□□□ -0.31
CPSF1-213ENST00000620219 GNB1P62873 340 aa13.13□□□□□ -0.31
CPSF1-213ENST00000620219 Q6ZPA2 131 aa13.13□□□□□ -0.31
CPSF1-213ENST00000620219 OR8B3Q8NGG8 313 aa13.13□□□□□ -0.31
CPSF1-213ENST00000620219 OR8B2Q96RD0 313 aa13.13□□□□□ -0.31
CPSF1-213ENST00000620219 RNF126Q9BV68 326 aa13.13□□□□□ -0.31
CPSF1-213ENST00000620219 USP9YO00507 2555 aaPredicted RBP13.13□□□□□ -0.31
CPSF1-213ENST00000620219 RTL8BQ17RB0 113 aa13.13□□□□□ -0.31
CPSF1-213ENST00000620219 C11orf53Q8IXP5 236 aa13.13□□□□□ -0.31
CPSF1-213ENST00000620219 R3HDM4Q96D70 268 aa13.13□□□□□ -0.31
CPSF1-213ENST00000620219 AKR1E2Q96JD6 320 aa13.13□□□□□ -0.31
CPSF1-213ENST00000620219 DVL1O14640 695 aa13.12□□□□□ -0.31
CPSF1-213ENST00000620219 NMBP08949 121 aa13.12□□□□□ -0.31
CPSF1-213ENST00000620219 OR2C3Q8N628 320 aa13.12□□□□□ -0.31
CPSF1-213ENST00000620219 TSPAN15O95858 294 aa13.12□□□□□ -0.31
CPSF1-213ENST00000620219 RAB2AP61019 212 aa13.12□□□□□ -0.31
CPSF1-213ENST00000620219 SELENOHQ8IZQ5 122 aaKnown RBP13.12□□□□□ -0.31
CPSF1-213ENST00000620219 OR5C1Q8NGR4 320 aa13.12□□□□□ -0.31
CPSF1-213ENST00000620219 PLEKHA2Q9HB19 425 aa13.12□□□□□ -0.31
CPSF1-213ENST00000620219 SIRT7Q9NRC8 400 aa13.12□□□□□ -0.31
CPSF1-213ENST00000620219 K7N7A8 449 aa13.12□□□□□ -0.31
CPSF1-213ENST00000620219 TSPAN4O14817 238 aa13.12□□□□□ -0.31
CPSF1-213ENST00000620219 RAB7AP51149 207 aa13.12□□□□□ -0.31
CPSF1-213ENST00000620219 UCP3P55916 312 aa13.12□□□□□ -0.31
CPSF1-213ENST00000620219 ERVK11-1P61568 191 aa13.12□□□□□ -0.31
CPSF1-213ENST00000620219 ARF6P62330 175 aa13.12□□□□□ -0.31
CPSF1-213ENST00000620219 NUP37Q8NFH4 326 aa13.12□□□□□ -0.31
CPSF1-213ENST00000620219 RSRP1Q9BUV0 290 aa13.12□□□□□ -0.31
CPSF1-213ENST00000620219 TMEM182Q6ZP80 229 aaPredicted RBP13.11□□□□□ -0.31
CPSF1-213ENST00000620219 ZNF645Q8N7E2 425 aa13.11□□□□□ -0.31
CPSF1-213ENST00000620219 ASB13Q8WXK3 278 aa13.11□□□□□ -0.31
CPSF1-213ENST00000620219 SLC25A4P12235 298 aa13.11□□□□□ -0.31
CPSF1-213ENST00000620219 IL3RAP26951 378 aa13.11□□□□□ -0.31
CPSF1-213ENST00000620219 AANATQ16613 207 aa13.11□□□□□ -0.31
CPSF1-213ENST00000620219 OR1S2Q8NGQ3 325 aa13.11□□□□□ -0.31
CPSF1-213ENST00000620219 GPR146Q96CH1 333 aa13.11□□□□□ -0.31
CPSF1-213ENST00000620219 DMRTA2Q96SC8 542 aa13.11□□□□□ -0.31
CPSF1-213ENST00000620219 SLC25A32Q9H2D1 315 aa13.11□□□□□ -0.31
CPSF1-213ENST00000620219 SLC35D1Q9NTN3 355 aa13.11□□□□□ -0.31
CPSF1-213ENST00000620219 ANAPC10Q9UM13 185 aa13.11□□□□□ -0.31
CPSF1-213ENST00000620219 FBXO7Q9Y3I1 522 aa13.11□□□□□ -0.31
CPSF1-213ENST00000620219 S1PR2O95136 353 aa13.11□□□□□ -0.31
CPSF1-213ENST00000620219 ELLP55199 621 aaPredicted RBP13.11□□□□□ -0.31
CPSF1-213ENST00000620219 ADORA2A-AS1P86434 159 aa13.11□□□□□ -0.31
CPSF1-213ENST00000620219 GPR157Q5UAW9 335 aa13.11□□□□□ -0.31
CPSF1-213ENST00000620219 ZNF835Q9Y2P0 537 aa13.11□□□□□ -0.31
CPSF1-213ENST00000620219 H0Y980 276 aa13.11□□□□□ -0.31
CPSF1-213ENST00000620219 TMEM65Q6PI78 240 aa13.11□□□□□ -0.31
CPSF1-213ENST00000620219 HIPK2Q9H2X6 1198 aa13.11□□□□□ -0.31
CPSF1-213ENST00000620219 TXNL1O43396 289 aa13.1□□□□□ -0.31
CPSF1-213ENST00000620219 BAXQ07812 192 aa13.1□□□□□ -0.31
CPSF1-213ENST00000620219 STUMQ69YW2 141 aa13.1□□□□□ -0.31
CPSF1-213ENST00000620219 APELAP0DMC3 54 aa13.1□□□□□ -0.31
CPSF1-213ENST00000620219 HBG1P69891 147 aa13.1□□□□□ -0.31
CPSF1-213ENST00000620219 HBG2P69892 147 aa13.1□□□□□ -0.31
CPSF1-213ENST00000620219 LYPD2Q6UXB3 125 aa13.1□□□□□ -0.31
CPSF1-213ENST00000620219 OR2G3Q8NGZ4 309 aa13.1□□□□□ -0.31
CPSF1-213ENST00000620219 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.1□□□□□ -0.31
CPSF1-213ENST00000620219 NAV2Q8IVL1 2488 aa13.1□□□□□ -0.31
CPSF1-213ENST00000620219 IGLV3-9A0A075B6K5 115 aa13.1□□□□□ -0.31
CPSF1-213ENST00000620219 C17orf98A8MV24 154 aa13.1□□□□□ -0.31
CPSF1-213ENST00000620219 RBMXL1Q96E39 390 aaKnown RBP13.1□□□□□ -0.31
CPSF1-213ENST00000620219 LURAP1Q96LR2 239 aa13.1□□□□□ -0.31
CPSF1-213ENST00000620219 JTBO76095 146 aa13.09□□□□□ -0.31
CPSF1-213ENST00000620219 COL8A2P25067 703 aa13.09□□□□□ -0.31
CPSF1-213ENST00000620219 THNSL2Q86YJ6 484 aa13.09□□□□□ -0.31
CPSF1-213ENST00000620219 RNF141Q8WVD5 230 aa13.09□□□□□ -0.31
CPSF1-213ENST00000620219 PCGF1Q9BSM1 259 aa13.09□□□□□ -0.31
CPSF1-213ENST00000620219 CHD3Q12873 2000 aaKnown RBP13.09□□□□□ -0.31
CPSF1-213ENST00000620219 SYNGR2O43760 224 aa13.09□□□□□ -0.31
CPSF1-213ENST00000620219 BVESQ8NE79 360 aa13.09□□□□□ -0.31
CPSF1-213ENST00000620219 RPEQ96AT9 228 aa13.09□□□□□ -0.31
CPSF1-213ENST00000620219 IDI2-AS1Q9NZ38 188 aa13.09□□□□□ -0.31
CPSF1-213ENST00000620219 CDS2O95674 445 aa13.09□□□□□ -0.31
CPSF1-213ENST00000620219 DAOP14920 347 aa13.09□□□□□ -0.31
CPSF1-213ENST00000620219 ZNF266Q14584 549 aa13.09□□□□□ -0.31
CPSF1-213ENST00000620219 HSD17B10Q99714 261 aaKnown RBP13.09□□□□□ -0.31
CPSF1-213ENST00000620219 POLQO75417 2590 aa13.09□□□□□ -0.31
CPSF1-213ENST00000620219 RAB29O14966 203 aa13.09□□□□□ -0.31
CPSF1-213ENST00000620219 ZNF672Q499Z4 452 aaPredicted RBP13.09□□□□□ -0.31
CPSF1-213ENST00000620219 GALNT14Q96FL9 552 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms