RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 ACOT12Q8WYK0 555 aa12.79□□□□□ -0.36
LSM4-206ENST00000600289 S100A16Q96FQ6 103 aaKnown RBP12.79□□□□□ -0.36
LSM4-206ENST00000600289 AUNIPQ9H7T9 357 aa12.79□□□□□ -0.36
LSM4-206ENST00000600289 ZNF221Q9UK13 617 aa12.79□□□□□ -0.36
LSM4-206ENST00000600289 TRAV18A0A075B6X5 111 aa12.78□□□□□ -0.36
LSM4-206ENST00000600289 H0YJW9 148 aa12.78□□□□□ -0.36
LSM4-206ENST00000600289 RBBP9O75884 186 aa12.78□□□□□ -0.36
LSM4-206ENST00000600289 NDUFA3O95167 84 aa12.78□□□□□ -0.36
LSM4-206ENST00000600289 TSPAN15O95858 294 aa12.78□□□□□ -0.36
LSM4-206ENST00000600289 CSF1P09603 554 aa12.78□□□□□ -0.36
LSM4-206ENST00000600289 ACTBP60709 375 aa12.78□□□□□ -0.36
LSM4-206ENST00000600289 CD83Q01151 205 aa12.78□□□□□ -0.36
LSM4-206ENST00000600289 CNIH2Q6PI25 160 aa12.78□□□□□ -0.36
LSM4-206ENST00000600289 FAM131AQ6UXB0 335 aa12.78□□□□□ -0.36
LSM4-206ENST00000600289 SLC35E3Q7Z769 313 aa12.78□□□□□ -0.36
LSM4-206ENST00000600289 CENPVQ7Z7K6 275 aaPredicted RBP12.78□□□□□ -0.36
LSM4-206ENST00000600289 FOXRED2Q8IWF2 684 aa12.78□□□□□ -0.36
LSM4-206ENST00000600289 OR5AU1Q8NGC0 362 aa12.78□□□□□ -0.36
LSM4-206ENST00000600289 CHPT1Q8WUD6 406 aa12.78□□□□□ -0.36
LSM4-206ENST00000600289 RNF5Q99942 180 aa12.78□□□□□ -0.36
LSM4-206ENST00000600289 RASL11BQ9BPW5 248 aa12.78□□□□□ -0.36
LSM4-206ENST00000600289 GINS4Q9BRT9 223 aa12.78□□□□□ -0.36
LSM4-206ENST00000600289 ANXA10Q9UJ72 324 aa12.78□□□□□ -0.36
LSM4-206ENST00000600289 WASHC3Q9Y3C0 194 aa12.78□□□□□ -0.36
LSM4-206ENST00000600289 BIRC6Q9NR09 4857 aa12.77□□□□□ -0.36
LSM4-206ENST00000600289 ADARB2-AS1A8MUL3 147 aa12.77□□□□□ -0.37
LSM4-206ENST00000600289 AP4M1O00189 453 aa12.77□□□□□ -0.37
LSM4-206ENST00000600289 NBR2O15453 112 aa12.77□□□□□ -0.37
LSM4-206ENST00000600289 MMDQ15546 238 aa12.77□□□□□ -0.37
LSM4-206ENST00000600289 GPR141Q7Z602 305 aa12.77□□□□□ -0.37
LSM4-206ENST00000600289 HOGA1Q86XE5 327 aa12.77□□□□□ -0.37
LSM4-206ENST00000600289 SAMD12Q8N8I0 201 aa12.77□□□□□ -0.37
LSM4-206ENST00000600289 C11orf44Q8N8P7 122 aa12.77□□□□□ -0.37
LSM4-206ENST00000600289 OR4X2Q8NGF9 303 aa12.77□□□□□ -0.37
LSM4-206ENST00000600289 CITED2Q99967 270 aaPredicted RBP12.77□□□□□ -0.37
LSM4-206ENST00000600289 ST6GALNAC5Q9BVH7 336 aa12.77□□□□□ -0.37
LSM4-206ENST00000600289 NAA50Q9GZZ1 169 aaKnown RBP12.77□□□□□ -0.37
LSM4-206ENST00000600289 RNF150Q9ULK6 438 aa12.77□□□□□ -0.37
LSM4-206ENST00000600289 PSMB11A5LHX3 300 aa12.76□□□□□ -0.37
LSM4-206ENST00000600289 HLA-DRB1P01911 266 aa12.76□□□□□ -0.37
LSM4-206ENST00000600289 APOA1P02647 267 aa12.76□□□□□ -0.37
LSM4-206ENST00000600289 OPN1MWP04001 364 aa12.76□□□□□ -0.37
LSM4-206ENST00000600289 OR8U9P0C7N5 309 aa12.76□□□□□ -0.37
LSM4-206ENST00000600289 OPN1MW2P0DN77 364 aa12.76□□□□□ -0.37
LSM4-206ENST00000600289 OPN1MW3P0DN78 364 aa12.76□□□□□ -0.37
LSM4-206ENST00000600289 SOX6P35712 828 aa12.76□□□□□ -0.37
LSM4-206ENST00000600289 CBX5P45973 191 aa12.76□□□□□ -0.37
LSM4-206ENST00000600289 RORCP51449 518 aa12.76□□□□□ -0.37
LSM4-206ENST00000600289 TAGLNQ01995 201 aaKnown RBP12.76□□□□□ -0.37
LSM4-206ENST00000600289 TCTEX1D4Q5JR98 221 aa12.76□□□□□ -0.37
LSM4-206ENST00000600289 PDPNQ86YL7 162 aa12.76□□□□□ -0.37
LSM4-206ENST00000600289 STPG2Q8N412 459 aa12.76□□□□□ -0.37
LSM4-206ENST00000600289 COMMD1Q8N668 190 aa12.76□□□□□ -0.37
LSM4-206ENST00000600289 OR8U1Q8NH10 309 aa12.76□□□□□ -0.37
LSM4-206ENST00000600289 GON7Q9BXV9 100 aa12.76□□□□□ -0.37
LSM4-206ENST00000600289 OR2D2Q9H210 308 aa12.76□□□□□ -0.37
LSM4-206ENST00000600289 SDHAF2Q9NX18 166 aa12.76□□□□□ -0.37
LSM4-206ENST00000600289 EPPK1P58107 5090 aaKnown RBP12.76□□□□□ -0.37
LSM4-206ENST00000600289 IGF1P05019 195 aa12.75□□□□□ -0.37
LSM4-206ENST00000600289 C5orf64Q2M2E5 130 aa12.75□□□□□ -0.37
LSM4-206ENST00000600289 TMEM69Q5SWH9 247 aa12.75□□□□□ -0.37
LSM4-206ENST00000600289 GPR107Q5VW38 600 aa12.75□□□□□ -0.37
LSM4-206ENST00000600289 GLDNQ6ZMI3 551 aaPredicted RBP12.75□□□□□ -0.37
LSM4-206ENST00000600289 ZNF383Q8NA42 475 aa12.75□□□□□ -0.37
LSM4-206ENST00000600289 BEST4Q8NFU0 473 aa12.75□□□□□ -0.37
LSM4-206ENST00000600289 RITA1Q96K30 269 aa12.75□□□□□ -0.37
LSM4-206ENST00000600289 BCL7BQ9BQE9 202 aa12.75□□□□□ -0.37
LSM4-206ENST00000600289 HSPB9Q9BQS6 159 aa12.75□□□□□ -0.37
LSM4-206ENST00000600289 ANAPC10Q9UM13 185 aa12.75□□□□□ -0.37
LSM4-206ENST00000600289 OR2W1Q9Y3N9 320 aa12.75□□□□□ -0.37
LSM4-206ENST00000600289 M0R1X1 148 aa12.74□□□□□ -0.37
LSM4-206ENST00000600289 TUSC2O75896 110 aa12.74□□□□□ -0.37
LSM4-206ENST00000600289 SLC22A5O76082 557 aa12.74□□□□□ -0.37
LSM4-206ENST00000600289 SPDEFO95238 335 aa12.74□□□□□ -0.37
LSM4-206ENST00000600289 HLA-DQB1P01920 261 aa12.74□□□□□ -0.37
LSM4-206ENST00000600289 APOA2P02652 100 aa12.74□□□□□ -0.37
LSM4-206ENST00000600289 CNTFRP26992 372 aa12.74□□□□□ -0.37
LSM4-206ENST00000600289 TAS2R20P59543 309 aa12.74□□□□□ -0.37
LSM4-206ENST00000600289 SLC35B1P78383 322 aa12.74□□□□□ -0.37
LSM4-206ENST00000600289 AP3S1Q92572 193 aa12.74□□□□□ -0.37
LSM4-206ENST00000600289 RBMXL1Q96E39 390 aaKnown RBP12.74□□□□□ -0.37
LSM4-206ENST00000600289 C5orf30Q96GV9 206 aa12.74□□□□□ -0.37
LSM4-206ENST00000600289 KIAA1456Q9P272 454 aa12.74□□□□□ -0.37
LSM4-206ENST00000600289 ZNF107Q9UII5 783 aaPredicted RBP12.74□□□□□ -0.37
LSM4-206ENST00000600289 TSSC4Q9Y5U2 329 aaPredicted RBP12.74□□□□□ -0.37
LSM4-206ENST00000600289 LINC01548A6NM66 108 aa12.73□□□□□ -0.37
LSM4-206ENST00000600289 H7C2Y5 167 aa12.73□□□□□ -0.37
LSM4-206ENST00000600289 EIF4EP06730 217 aaKnown RBP12.73□□□□□ -0.37
LSM4-206ENST00000600289 THBS3P49746 956 aa12.73□□□□□ -0.37
LSM4-206ENST00000600289 CFHR3Q02985 330 aa12.73□□□□□ -0.37
LSM4-206ENST00000600289 C10orf99Q6UWK7 81 aa12.73□□□□□ -0.37
LSM4-206ENST00000600289 ZNF645Q8N7E2 425 aa12.73□□□□□ -0.37
LSM4-206ENST00000600289 GVQW1Q8N7I0 195 aa12.73□□□□□ -0.37
LSM4-206ENST00000600289 OR4F17Q8NGA8 305 aa12.73□□□□□ -0.37
LSM4-206ENST00000600289 ADTRPQ96IZ2 230 aa12.73□□□□□ -0.37
LSM4-206ENST00000600289 NOL4LQ96MY1 436 aaPredicted RBP12.73□□□□□ -0.37
LSM4-206ENST00000600289 OR4F4Q96R69 305 aa12.73□□□□□ -0.37
LSM4-206ENST00000600289 COMMD3Q9UBI1 195 aa12.73□□□□□ -0.37
LSM4-206ENST00000600289 RRHO14718 337 aa12.72□□□□□ -0.37
LSM4-206ENST00000600289 RRASP10301 218 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 134.4 ms