RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 TMEM272A0A1B0GTI8 110 aa9.68□□□□□ -0.86
TRIM28-212ENST00000597995 ST8SIA5O15466 376 aa9.68□□□□□ -0.86
TRIM28-212ENST00000597995 SAP30O75446 220 aa9.68□□□□□ -0.86
TRIM28-212ENST00000597995 SCTP09683 121 aa9.68□□□□□ -0.86
TRIM28-212ENST00000597995 FRMD6-AS1P0C7T7 363 aa9.68□□□□□ -0.86
TRIM28-212ENST00000597995 SAA2P0DJI9 122 aaPredicted RBP9.68□□□□□ -0.86
TRIM28-212ENST00000597995 GP9P14770 177 aa9.68□□□□□ -0.86
TRIM28-212ENST00000597995 SPNP16150 400 aa9.68□□□□□ -0.86
TRIM28-212ENST00000597995 MOGAT2Q3SYC2 334 aa9.68□□□□□ -0.86
TRIM28-212ENST00000597995 LIN54Q6MZP7 749 aa9.68□□□□□ -0.86
TRIM28-212ENST00000597995 OVCH2Q7RTZ1 564 aa9.68□□□□□ -0.86
TRIM28-212ENST00000597995 NPBQ8NG41 125 aa9.68□□□□□ -0.86
TRIM28-212ENST00000597995 OR6Q1Q8NGQ2 317 aa9.68□□□□□ -0.86
TRIM28-212ENST00000597995 IL1F10Q8WWZ1 152 aa9.68□□□□□ -0.86
TRIM28-212ENST00000597995 DLX4Q92988 240 aaPredicted RBP9.68□□□□□ -0.86
TRIM28-212ENST00000597995 OR5B12Q96R08 314 aa9.68□□□□□ -0.86
TRIM28-212ENST00000597995 CITED4Q96RK1 184 aa9.68□□□□□ -0.86
TRIM28-212ENST00000597995 AGMATQ9BSE5 352 aa9.68□□□□□ -0.86
TRIM28-212ENST00000597995 URM1Q9BTM9 101 aaKnown RBP9.68□□□□□ -0.86
TRIM28-212ENST00000597995 GHITMQ9H3K2 345 aa9.68□□□□□ -0.86
TRIM28-212ENST00000597995 CHMP1AQ9HD42 196 aaPredicted RBP9.68□□□□□ -0.86
TRIM28-212ENST00000597995 Q9N2K0 584 aa9.68□□□□□ -0.86
TRIM28-212ENST00000597995 OR1A1Q9P1Q5 309 aa9.68□□□□□ -0.86
TRIM28-212ENST00000597995 STEAP1Q9UHE8 339 aa9.68□□□□□ -0.86
TRIM28-212ENST00000597995 BLOC1S6Q9UL45 172 aa9.68□□□□□ -0.86
TRIM28-212ENST00000597995 KCNK7Q9Y2U2 307 aa9.68□□□□□ -0.86
TRIM28-212ENST00000597995 LRRC42Q9Y546 428 aa9.68□□□□□ -0.86
TRIM28-212ENST00000597995 RYR2Q92736 4967 aa9.67□□□□□ -0.86
TRIM28-212ENST00000597995 A0A0B4J203 849 aa9.67□□□□□ -0.86
TRIM28-212ENST00000597995 IGKV1-6A0A0C4DH72 117 aa9.67□□□□□ -0.86
TRIM28-212ENST00000597995 LCE6AA0A183 80 aa9.67□□□□□ -0.86
TRIM28-212ENST00000597995 TRDV1A0A1B0GX56 115 aa9.67□□□□□ -0.86
TRIM28-212ENST00000597995 LINC01619G3V211 115 aa9.67□□□□□ -0.86
TRIM28-212ENST00000597995 NBR2O15453 112 aa9.67□□□□□ -0.86
TRIM28-212ENST00000597995 DENRO43583 198 aaKnown RBP9.67□□□□□ -0.86
TRIM28-212ENST00000597995 PROP1O75360 226 aa9.67□□□□□ -0.86
TRIM28-212ENST00000597995 RANBP1P43487 201 aa9.67□□□□□ -0.86
TRIM28-212ENST00000597995 CRIP2P52943 208 aaPredicted RBP9.67□□□□□ -0.86
TRIM28-212ENST00000597995 GABARAPL2P60520 117 aa9.67□□□□□ -0.86
TRIM28-212ENST00000597995 HLA-DRB3P79483 266 aa9.67□□□□□ -0.86
TRIM28-212ENST00000597995 C5orf64Q2M2E5 130 aa9.67□□□□□ -0.86
TRIM28-212ENST00000597995 RPL39P5Q59GN2 51 aa9.67□□□□□ -0.86
TRIM28-212ENST00000597995 UBE2UQ5VVX9 321 aa9.67□□□□□ -0.86
TRIM28-212ENST00000597995 ACSM6Q6P461 480 aa9.67□□□□□ -0.86
TRIM28-212ENST00000597995 SPARTQ8N0X7 666 aa9.67□□□□□ -0.86
TRIM28-212ENST00000597995 OR2AK2Q8NG84 335 aa9.67□□□□□ -0.86
TRIM28-212ENST00000597995 SETD6Q8TBK2 473 aa9.67□□□□□ -0.86
TRIM28-212ENST00000597995 RIMS4Q9H426 269 aaPredicted RBP9.67□□□□□ -0.86
TRIM28-212ENST00000597995 PALMDQ9NP74 551 aa9.67□□□□□ -0.86
TRIM28-212ENST00000597995 PARP11Q9NR21 331 aa9.67□□□□□ -0.86
TRIM28-212ENST00000597995 TPSG1Q9NRR2 321 aa9.67□□□□□ -0.86
TRIM28-212ENST00000597995 ABRACLQ9P1F3 81 aa9.67□□□□□ -0.86
TRIM28-212ENST00000597995 IFITM5A6NNB3 132 aa9.66□□□□□ -0.86
TRIM28-212ENST00000597995 MRPS14O60783 128 aaKnown RBP9.66□□□□□ -0.86
TRIM28-212ENST00000597995 RGS11O94810 467 aa9.66□□□□□ -0.86
TRIM28-212ENST00000597995 NDUFA3O95167 84 aa9.66□□□□□ -0.86
TRIM28-212ENST00000597995 CT45A6P0DMU7 189 aa9.66□□□□□ -0.86
TRIM28-212ENST00000597995 CT45A5P0DMU8 189 aa9.66□□□□□ -0.86
TRIM28-212ENST00000597995 CT45A7P0DMV0 189 aa9.66□□□□□ -0.86
TRIM28-212ENST00000597995 SNRPBP14678 240 aaKnown RBP9.66□□□□□ -0.86
TRIM28-212ENST00000597995 C19orf54Q5BKX5 351 aa9.66□□□□□ -0.86
TRIM28-212ENST00000597995 ZNF660Q6AZW8 331 aaPredicted RBP9.66□□□□□ -0.86
TRIM28-212ENST00000597995 C22orf42Q6IC83 251 aa9.66□□□□□ -0.86
TRIM28-212ENST00000597995 MOB1BQ7L9L4 216 aa9.66□□□□□ -0.86
TRIM28-212ENST00000597995 TCTEX1D1Q8N7M0 179 aa9.66□□□□□ -0.86
TRIM28-212ENST00000597995 ABHD14BQ96IU4 210 aa9.66□□□□□ -0.86
TRIM28-212ENST00000597995 TOLLIPQ9H0E2 274 aa9.66□□□□□ -0.86
TRIM28-212ENST00000597995 C11orf54Q9H0W9 315 aaPredicted RBP9.66□□□□□ -0.86
TRIM28-212ENST00000597995 KIAA1456Q9P272 454 aa9.66□□□□□ -0.86
TRIM28-212ENST00000597995 SLC23A1Q9UHI7 598 aa9.66□□□□□ -0.86
TRIM28-212ENST00000597995 RAB22AQ9UL26 194 aa9.66□□□□□ -0.86
TRIM28-212ENST00000597995 RAB27BO00194 218 aa9.65□□□□□ -0.86
TRIM28-212ENST00000597995 ITGB1BP1O14713 200 aa9.65□□□□□ -0.86
TRIM28-212ENST00000597995 ARPC1BO15143 372 aaKnown RBP9.65□□□□□ -0.86
TRIM28-212ENST00000597995 LGALS1P09382 135 aaKnown RBP9.65□□□□□ -0.86
TRIM28-212ENST00000597995 OR8U9P0C7N5 309 aa9.65□□□□□ -0.86
TRIM28-212ENST00000597995 PSMD7P51665 324 aa9.65□□□□□ -0.86
TRIM28-212ENST00000597995 SLURP1P55000 103 aa9.65□□□□□ -0.86
TRIM28-212ENST00000597995 LINC00205P59089 165 aa9.65□□□□□ -0.86
TRIM28-212ENST00000597995 FAM71F2Q6NXP2 309 aa9.65□□□□□ -0.86
TRIM28-212ENST00000597995 GLDNQ6ZMI3 551 aaPredicted RBP9.65□□□□□ -0.86
TRIM28-212ENST00000597995 OR56B1Q8NGI3 324 aa9.65□□□□□ -0.86
TRIM28-212ENST00000597995 PTX4Q96A99 478 aa9.65□□□□□ -0.86
TRIM28-212ENST00000597995 CMSS1Q9BQ75 279 aaKnown RBP9.65□□□□□ -0.86
TRIM28-212ENST00000597995 TM2D3Q9BRN9 247 aa9.65□□□□□ -0.86
TRIM28-212ENST00000597995 ALX4Q9H161 411 aaPredicted RBP9.65□□□□□ -0.86
TRIM28-212ENST00000597995 C12orf4Q9NQ89 552 aa9.65□□□□□ -0.86
TRIM28-212ENST00000597995 PIPOXQ9P0Z9 390 aa9.65□□□□□ -0.86
TRIM28-212ENST00000597995 FOXA2Q9Y261 457 aaPredicted RBP9.65□□□□□ -0.86
TRIM28-212ENST00000597995 A0A1W2PN81 502 aa9.64□□□□□ -0.87
TRIM28-212ENST00000597995 SMIM30A4D0T7 59 aa9.64□□□□□ -0.87
TRIM28-212ENST00000597995 TRIM64CA6NLI5 447 aa9.64□□□□□ -0.87
TRIM28-212ENST00000597995 A8MZ25 164 aa9.64□□□□□ -0.87
TRIM28-212ENST00000597995 TRDCB7Z8K6 153 aa9.64□□□□□ -0.87
TRIM28-212ENST00000597995 PDCD5O14737 125 aa9.64□□□□□ -0.87
TRIM28-212ENST00000597995 RAB29O14966 203 aa9.64□□□□□ -0.87
TRIM28-212ENST00000597995 SOX15O60248 233 aa9.64□□□□□ -0.87
TRIM28-212ENST00000597995 HSPB1P04792 205 aaKnown RBP9.64□□□□□ -0.87
TRIM28-212ENST00000597995 CD3GP09693 182 aa9.64□□□□□ -0.87
TRIM28-212ENST00000597995 RAB3BP20337 219 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms