RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 DIRAS3O95661 229 aa8.8□□□□□ -1
VRK3-210ENST00000596121 IGHG2P01859 326 aa8.8□□□□□ -1
VRK3-210ENST00000596121 IGKV1-13P0DP09 117 aa8.8□□□□□ -1
VRK3-210ENST00000596121 GPR12P47775 334 aa8.8□□□□□ -1
VRK3-210ENST00000596121 ACTBP60709 375 aa8.8□□□□□ -1
VRK3-210ENST00000596121 ARSJQ5FYB0 599 aaPredicted RBP8.8□□□□□ -1
VRK3-210ENST00000596121 GPR141Q7Z602 305 aa8.8□□□□□ -1
VRK3-210ENST00000596121 OR5AN1Q8NGI8 311 aa8.8□□□□□ -1
VRK3-210ENST00000596121 EDARADDQ8WWZ3 215 aa8.8□□□□□ -1
VRK3-210ENST00000596121 DIABLOQ9NR28 239 aa8.8□□□□□ -1
VRK3-210ENST00000596121 LIN7CQ9NUP9 197 aaKnown RBP8.8□□□□□ -1
VRK3-210ENST00000596121 ANXA10Q9UJ72 324 aa8.8□□□□□ -1
VRK3-210ENST00000596121 M0QZ24 198 aa8.79□□□□□ -1
VRK3-210ENST00000596121 M0R1X1 148 aa8.79□□□□□ -1
VRK3-210ENST00000596121 PLXNB1O43157 2135 aa8.79□□□□□ -1
VRK3-210ENST00000596121 HPGDSO60760 199 aa8.79□□□□□ -1
VRK3-210ENST00000596121 FBXO24O75426 580 aa8.79□□□□□ -1
VRK3-210ENST00000596121 IGLV2-14P01704 120 aa8.79□□□□□ -1
VRK3-210ENST00000596121 HLA-DQB1P01920 261 aa8.79□□□□□ -1
VRK3-210ENST00000596121 ELK1P19419 428 aa8.79□□□□□ -1
VRK3-210ENST00000596121 NFYAP23511 347 aaPredicted RBP8.79□□□□□ -1
VRK3-210ENST00000596121 TAS2R20P59543 309 aa8.79□□□□□ -1
VRK3-210ENST00000596121 PITPNAQ00169 270 aa8.79□□□□□ -1
VRK3-210ENST00000596121 CD83Q01151 205 aa8.79□□□□□ -1
VRK3-210ENST00000596121 CNIH2Q6PI25 160 aa8.79□□□□□ -1
VRK3-210ENST00000596121 TREML4Q6UXN2 200 aa8.79□□□□□ -1
VRK3-210ENST00000596121 CENPVQ7Z7K6 275 aaPredicted RBP8.79□□□□□ -1
VRK3-210ENST00000596121 ZNF329Q86UD4 541 aa8.79□□□□□ -1
VRK3-210ENST00000596121 HOGA1Q86XE5 327 aa8.79□□□□□ -1
VRK3-210ENST00000596121 NPBQ8NG41 125 aa8.79□□□□□ -1
VRK3-210ENST00000596121 OR8H1Q8NGG4 311 aa8.79□□□□□ -1
VRK3-210ENST00000596121 SNAPC3Q92966 411 aa8.79□□□□□ -1
VRK3-210ENST00000596121 KCTD12Q96CX2 325 aaKnown RBP8.79□□□□□ -1
VRK3-210ENST00000596121 S100A16Q96FQ6 103 aaKnown RBP8.79□□□□□ -1
VRK3-210ENST00000596121 GINS4Q9BRT9 223 aa8.79□□□□□ -1
VRK3-210ENST00000596121 OR2D2Q9H210 308 aa8.79□□□□□ -1
VRK3-210ENST00000596121 GHITMQ9H3K2 345 aa8.79□□□□□ -1
VRK3-210ENST00000596121 ZNF107Q9UII5 783 aaPredicted RBP8.79□□□□□ -1
VRK3-210ENST00000596121 ZNF221Q9UK13 617 aa8.79□□□□□ -1
VRK3-210ENST00000596121 GAB2Q9UQC2 676 aa8.79□□□□□ -1
VRK3-210ENST00000596121 TET2Q6N021 2002 aaPredicted RBP8.78□□□□□ -1
VRK3-210ENST00000596121 OR5H14A6NHG9 310 aa8.78□□□□□ -1
VRK3-210ENST00000596121 FCN1O00602 326 aa8.78□□□□□ -1
VRK3-210ENST00000596121 PEX14O75381 377 aa8.78□□□□□ -1
VRK3-210ENST00000596121 TUSC2O75896 110 aa8.78□□□□□ -1
VRK3-210ENST00000596121 IGKV1-16P04430 117 aa8.78□□□□□ -1
VRK3-210ENST00000596121 RORCP51449 518 aa8.78□□□□□ -1
VRK3-210ENST00000596121 MMDQ15546 238 aa8.78□□□□□ -1
VRK3-210ENST00000596121 NSUN5P1Q3KNT7 163 aa8.78□□□□□ -1
VRK3-210ENST00000596121 SLC35E3Q7Z769 313 aa8.78□□□□□ -1
VRK3-210ENST00000596121 CLVS1Q8IUQ0 354 aaPredicted RBP8.78□□□□□ -1
VRK3-210ENST00000596121 BEST4Q8NFU0 473 aa8.78□□□□□ -1
VRK3-210ENST00000596121 FAM110DQ8TAY7 271 aaPredicted RBP8.78□□□□□ -1
VRK3-210ENST00000596121 PHF21AQ96BD5 680 aa8.78□□□□□ -1
VRK3-210ENST00000596121 ANAPC10Q9UM13 185 aa8.78□□□□□ -1
VRK3-210ENST00000596121 NOTCH1P46531 2555 aa8.78□□□□□ -1
VRK3-210ENST00000596121 PSMB11A5LHX3 300 aa8.77□□□□□ -1.01
VRK3-210ENST00000596121 LINC00473A8K010 186 aa8.77□□□□□ -1.01
VRK3-210ENST00000596121 NBR2O15453 112 aa8.77□□□□□ -1.01
VRK3-210ENST00000596121 NDUFA3O95167 84 aa8.77□□□□□ -1.01
VRK3-210ENST00000596121 ZNF182P17025 639 aaPredicted RBP8.77□□□□□ -1.01
VRK3-210ENST00000596121 MC5RP33032 325 aa8.77□□□□□ -1.01
VRK3-210ENST00000596121 RPL5P46777 297 aaKnown RBP8.77□□□□□ -1.01
VRK3-210ENST00000596121 C5orf64Q2M2E5 130 aa8.77□□□□□ -1.01
VRK3-210ENST00000596121 TMEM69Q5SWH9 247 aa8.77□□□□□ -1.01
VRK3-210ENST00000596121 C18orf65Q6ZTR6 163 aa8.77□□□□□ -1.01
VRK3-210ENST00000596121 STPG2Q8N412 459 aa8.77□□□□□ -1.01
VRK3-210ENST00000596121 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.77□□□□□ -1.01
VRK3-210ENST00000596121 ACOT12Q8WYK0 555 aa8.77□□□□□ -1.01
VRK3-210ENST00000596121 DDB2Q92466 427 aa8.77□□□□□ -1.01
VRK3-210ENST00000596121 RASL11BQ9BPW5 248 aa8.77□□□□□ -1.01
VRK3-210ENST00000596121 MIXL1Q9H2W2 232 aa8.77□□□□□ -1.01
VRK3-210ENST00000596121 FBXL15Q9H469 300 aa8.77□□□□□ -1.01
VRK3-210ENST00000596121 WASHC3Q9Y3C0 194 aa8.77□□□□□ -1.01
VRK3-210ENST00000596121 FBXO7Q9Y3I1 522 aa8.77□□□□□ -1.01
VRK3-210ENST00000596121 OR2W1Q9Y3N9 320 aa8.77□□□□□ -1.01
VRK3-210ENST00000596121 NOTCH3Q9UM47 2321 aa8.76□□□□□ -1.01
VRK3-210ENST00000596121 IGHV7-81A0A0B4J1V7 117 aa8.76□□□□□ -1.01
VRK3-210ENST00000596121 A0A1W2PRX2 142 aa8.76□□□□□ -1.01
VRK3-210ENST00000596121 SRRM4A7MD48 611 aaKnown RBP8.76□□□□□ -1.01
VRK3-210ENST00000596121 H7C2Y5 167 aa8.76□□□□□ -1.01
VRK3-210ENST00000596121 RRHO14718 337 aa8.76□□□□□ -1.01
VRK3-210ENST00000596121 IGLV2-23P01705 113 aa8.76□□□□□ -1.01
VRK3-210ENST00000596121 APOA1P02647 267 aa8.76□□□□□ -1.01
VRK3-210ENST00000596121 CSF1P09603 554 aa8.76□□□□□ -1.01
VRK3-210ENST00000596121 CTXN2P0C2S0 81 aa8.76□□□□□ -1.01
VRK3-210ENST00000596121 EGR2P11161 476 aaPredicted RBP8.76□□□□□ -1.01
VRK3-210ENST00000596121 AADACP22760 399 aa8.76□□□□□ -1.01
VRK3-210ENST00000596121 DUTP33316 252 aaKnown RBP8.76□□□□□ -1.01
VRK3-210ENST00000596121 SOX6P35712 828 aa8.76□□□□□ -1.01
VRK3-210ENST00000596121 RPL30P62888 115 aaKnown RBP8.76□□□□□ -1.01
VRK3-210ENST00000596121 NDPQ00604 133 aa8.76□□□□□ -1.01
VRK3-210ENST00000596121 CFHR3Q02985 330 aa8.76□□□□□ -1.01
VRK3-210ENST00000596121 EIF4EBP1Q13541 118 aaPredicted RBP8.76□□□□□ -1.01
VRK3-210ENST00000596121 PSG5Q15238 335 aa8.76□□□□□ -1.01
VRK3-210ENST00000596121 C2orf68Q2NKX9 166 aa8.76□□□□□ -1.01
VRK3-210ENST00000596121 LCNL1Q6ZST4 164 aa8.76□□□□□ -1.01
VRK3-210ENST00000596121 NDUFA11Q86Y39 141 aa8.76□□□□□ -1.01
VRK3-210ENST00000596121 LYSMD2Q8IV50 215 aa8.76□□□□□ -1.01
VRK3-210ENST00000596121 BVESQ8NE79 360 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms