RNA–Protein interactions for RNA: ENST00000594067.5

LIG1-206, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-206ENST00000594067 HOXA4Q00056 320 aaPredicted RBP13.89□□□□□ -0.19
LIG1-206ENST00000594067 TLE1Q04724 770 aa13.89□□□□□ -0.19
LIG1-206ENST00000594067 ADIRFQ15847 76 aa13.89□□□□□ -0.19
LIG1-206ENST00000594067 TMEM41BQ5BJD5 291 aa13.89□□□□□ -0.19
LIG1-206ENST00000594067 C16orf82Q7Z2V1 217 aa13.89□□□□□ -0.19
LIG1-206ENST00000594067 ZNF664Q8N3J9 261 aa13.89□□□□□ -0.19
LIG1-206ENST00000594067 OR1P1Q8NH06 330 aa13.89□□□□□ -0.19
LIG1-206ENST00000594067 SMIM7Q9BQ49 75 aa13.89□□□□□ -0.19
LIG1-206ENST00000594067 MAP1LC3BQ9GZQ8 125 aa13.89□□□□□ -0.19
LIG1-206ENST00000594067 ARRDC1-AS1Q9H2J1 176 aa13.89□□□□□ -0.19
LIG1-206ENST00000594067 POLDIP2Q9Y2S7 368 aa13.89□□□□□ -0.19
LIG1-206ENST00000594067 GZMHP20718 246 aa13.88□□□□□ -0.19
LIG1-206ENST00000594067 IDH3GP51553 393 aaPredicted RBP13.88□□□□□ -0.19
LIG1-206ENST00000594067 PPP1CBP62140 327 aa13.88□□□□□ -0.19
LIG1-206ENST00000594067 SLC38A11Q08AI6 406 aa13.88□□□□□ -0.19
LIG1-206ENST00000594067 PMS2P11Q13670 270 aa13.88□□□□□ -0.19
LIG1-206ENST00000594067 NCR3LG1Q68D85 454 aa13.88□□□□□ -0.19
LIG1-206ENST00000594067 OR51G1Q8NGK1 321 aa13.88□□□□□ -0.19
LIG1-206ENST00000594067 TAF15Q92804 592 aaKnown RBP eCLIP13.88□□□□□ -0.196e-7■■■■□ 23.8
LIG1-206ENST00000594067 AGMATQ9BSE5 352 aa13.88□□□□□ -0.19
LIG1-206ENST00000594067 ACTR3CQ9C0K3 210 aaPredicted RBP13.88□□□□□ -0.19
LIG1-206ENST00000594067 SH2D1BO14796 132 aa13.88□□□□□ -0.19
LIG1-206ENST00000594067 RAMP3O60896 148 aa13.88□□□□□ -0.19
LIG1-206ENST00000594067 SMPD2O60906 423 aa13.88□□□□□ -0.19
LIG1-206ENST00000594067 FGF7P21781 194 aa13.88□□□□□ -0.19
LIG1-206ENST00000594067 TMEM241Q24JQ0 296 aa13.88□□□□□ -0.19
LIG1-206ENST00000594067 COA6Q5JTJ3 125 aaKnown RBP13.88□□□□□ -0.19
LIG1-206ENST00000594067 CYP2G1PQ6ZSU1 146 aa13.88□□□□□ -0.19
LIG1-206ENST00000594067 OR1L1Q8NH94 360 aa13.88□□□□□ -0.19
LIG1-206ENST00000594067 WDYHV1Q96HA8 205 aa13.88□□□□□ -0.19
LIG1-206ENST00000594067 C2orf88Q9BSF0 95 aa13.88□□□□□ -0.19
LIG1-206ENST00000594067 MBNL3Q9NUK0 354 aaKnown RBP13.88□□□□□ -0.19
LIG1-206ENST00000594067 GAB2Q9UQC2 676 aa13.88□□□□□ -0.19
LIG1-206ENST00000594067 KLF13Q9Y2Y9 288 aaPredicted RBP13.88□□□□□ -0.19
LIG1-206ENST00000594067 IGKV1D-33P01593 117 aa13.87□□□□□ -0.19
LIG1-206ENST00000594067 IGKV1-33P01594 117 aa13.87□□□□□ -0.19
LIG1-206ENST00000594067 CENPVQ7Z7K6 275 aaPredicted RBP13.87□□□□□ -0.19
LIG1-206ENST00000594067 Q8IYB0 196 aa13.87□□□□□ -0.19
LIG1-206ENST00000594067 ZNF808Q8N4W9 903 aaPredicted RBP13.87□□□□□ -0.19
LIG1-206ENST00000594067 RPP25LQ8N5L8 163 aaKnown RBP13.87□□□□□ -0.19
LIG1-206ENST00000594067 NECAP1Q8NC96 275 aa13.87□□□□□ -0.19
LIG1-206ENST00000594067 SPRR3Q9UBC9 169 aa13.87□□□□□ -0.19
LIG1-206ENST00000594067 WIPI2Q9Y4P8 454 aa13.87□□□□□ -0.19
LIG1-206ENST00000594067 ARHGAP21Q5T5U3 1957 aa13.87□□□□□ -0.19
LIG1-206ENST00000594067 URB1O60287 2271 aaKnown RBP13.87□□□□□ -0.19
LIG1-206ENST00000594067 C21orf140B9A014 251 aa13.87□□□□□ -0.19
LIG1-206ENST00000594067 KLRC4-KLRK1H3BQV0 150 aa13.87□□□□□ -0.19
LIG1-206ENST00000594067 HMGB3O15347 200 aaKnown RBP13.87□□□□□ -0.19
LIG1-206ENST00000594067 KRASP01116 189 aa13.87□□□□□ -0.19
LIG1-206ENST00000594067 IFNA1P01562 189 aa13.87□□□□□ -0.19
LIG1-206ENST00000594067 ZNF816Q0VGE8 651 aaPredicted RBP13.87□□□□□ -0.19
LIG1-206ENST00000594067 TMEM164Q5U3C3 297 aa13.87□□□□□ -0.19
LIG1-206ENST00000594067 SLC25A40Q8TBP6 338 aa13.87□□□□□ -0.19
LIG1-206ENST00000594067 LHX4Q969G2 390 aa13.87□□□□□ -0.19
LIG1-206ENST00000594067 PINX1Q96BK5 328 aaKnown RBP13.87□□□□□ -0.19
LIG1-206ENST00000594067 PSPNO60542 156 aa13.87□□□□□ -0.19
LIG1-206ENST00000594067 G6PCP35575 357 aa13.87□□□□□ -0.19
LIG1-206ENST00000594067 MPLP40238 635 aa13.87□□□□□ -0.19
LIG1-206ENST00000594067 OR3A1P47881 315 aa13.87□□□□□ -0.19
LIG1-206ENST00000594067 RPS16P62249 146 aaKnown RBP13.87□□□□□ -0.19
LIG1-206ENST00000594067 MEF2BQ02080 365 aaPredicted RBP13.87□□□□□ -0.19
LIG1-206ENST00000594067 ZNF146Q15072 292 aa13.87□□□□□ -0.19
LIG1-206ENST00000594067 BSXQ3C1V8 233 aa13.87□□□□□ -0.19
LIG1-206ENST00000594067 LBHQ53QV2 105 aaPredicted RBP13.87□□□□□ -0.19
LIG1-206ENST00000594067 CXorf67Q86X51 503 aaPredicted RBP13.87□□□□□ -0.19
LIG1-206ENST00000594067 SLC39A9Q9NUM3 307 aa13.87□□□□□ -0.19
LIG1-206ENST00000594067 LAMP3Q9UQV4 416 aa13.87□□□□□ -0.19
LIG1-206ENST00000594067 KBTBD11O94819 623 aa13.86□□□□□ -0.19
LIG1-206ENST00000594067 RPL23P62829 140 aaKnown RBP13.86□□□□□ -0.19
LIG1-206ENST00000594067 RPL30P62888 115 aaKnown RBP13.86□□□□□ -0.19
LIG1-206ENST00000594067 TNFRSF9Q07011 255 aa13.86□□□□□ -0.19
LIG1-206ENST00000594067 RNFT1Q5M7Z0 435 aa13.86□□□□□ -0.19
LIG1-206ENST00000594067 MDS2Q8NDY4 140 aa13.86□□□□□ -0.19
LIG1-206ENST00000594067 OR52L2PQ8NGH6 319 aa13.86□□□□□ -0.19
LIG1-206ENST00000594067 C5orf30Q96GV9 206 aa13.86□□□□□ -0.19
LIG1-206ENST00000594067 OR2D2Q9H210 308 aa13.86□□□□□ -0.19
LIG1-206ENST00000594067 XKRY2A2RUG3 117 aa13.86□□□□□ -0.19
LIG1-206ENST00000594067 HAND1O96004 215 aa13.86□□□□□ -0.19
LIG1-206ENST00000594067 TFF1P04155 84 aa13.86□□□□□ -0.19
LIG1-206ENST00000594067 P2RY6Q15077 328 aa13.86□□□□□ -0.19
LIG1-206ENST00000594067 ATP1A1-AS1Q5TC04 95 aa13.86□□□□□ -0.19
LIG1-206ENST00000594067 TMEM14EPQ6UXP3 125 aa13.86□□□□□ -0.19
LIG1-206ENST00000594067 TGIF2LYQ8IUE0 185 aa13.86□□□□□ -0.19
LIG1-206ENST00000594067 RAB24Q969Q5 203 aa13.86□□□□□ -0.19
LIG1-206ENST00000594067 PARD6GQ9BYG4 376 aaPredicted RBP13.86□□□□□ -0.19
LIG1-206ENST00000594067 CLN8Q9UBY8 286 aa13.86□□□□□ -0.19
LIG1-206ENST00000594067 RNF212BA8MTL3 300 aa13.85□□□□□ -0.19
LIG1-206ENST00000594067 WNT9BO14905 357 aa13.85□□□□□ -0.19
LIG1-206ENST00000594067 ZNF66Q6ZN08 573 aa13.85□□□□□ -0.19
LIG1-206ENST00000594067 ZNF826PQ6ZT77 177 aa13.85□□□□□ -0.19
LIG1-206ENST00000594067 RPUSD4Q96CM3 377 aaKnown RBP13.85□□□□□ -0.19
LIG1-206ENST00000594067 TRGV5A0A0B4J1U4 118 aa13.85□□□□□ -0.19
LIG1-206ENST00000594067 LYZL6O75951 148 aa13.85□□□□□ -0.19
LIG1-206ENST00000594067 TUBG1P23258 451 aa13.85□□□□□ -0.19
LIG1-206ENST00000594067 GALR1P47211 349 aa13.85□□□□□ -0.19
LIG1-206ENST00000594067 PSG7Q13046 419 aa13.85□□□□□ -0.19
LIG1-206ENST00000594067 ACSM6Q6P461 480 aa13.85□□□□□ -0.19
LIG1-206ENST00000594067 ZNF645Q8N7E2 425 aa13.85□□□□□ -0.19
LIG1-206ENST00000594067 NOL4LQ96MY1 436 aaPredicted RBP13.85□□□□□ -0.19
LIG1-206ENST00000594067 ELOVL1Q9BW60 279 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms