RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 APOA2P02652 100 aa15.43■□□□□ 0.06
SS18-209ENST00000578595 TFAP2AP05549 437 aa15.43■□□□□ 0.06
SS18-209ENST00000578595 FCER2P06734 321 aa15.43■□□□□ 0.06
SS18-209ENST00000578595 CT45A6P0DMU7 189 aa15.43■□□□□ 0.06
SS18-209ENST00000578595 CT45A5P0DMU8 189 aa15.43■□□□□ 0.06
SS18-209ENST00000578595 CT45A7P0DMV0 189 aa15.43■□□□□ 0.06
SS18-209ENST00000578595 CNTFRP26992 372 aa15.43■□□□□ 0.06
SS18-209ENST00000578595 SOX6P35712 828 aa15.43■□□□□ 0.06
SS18-209ENST00000578595 ARPC4P59998 168 aa15.43■□□□□ 0.06
SS18-209ENST00000578595 SLC35B1P78383 322 aa15.43■□□□□ 0.06
SS18-209ENST00000578595 C10orf99Q6UWK7 81 aa15.43■□□□□ 0.06
SS18-209ENST00000578595 ZNF329Q86UD4 541 aa15.43■□□□□ 0.06
SS18-209ENST00000578595 NDUFA11Q86Y39 141 aa15.43■□□□□ 0.06
SS18-209ENST00000578595 CHPT1Q8WUD6 406 aa15.43■□□□□ 0.06
SS18-209ENST00000578595 SLC25A46Q96AG3 418 aa15.43■□□□□ 0.06
SS18-209ENST00000578595 R3HDM4Q96D70 268 aa15.43■□□□□ 0.06
SS18-209ENST00000578595 ABCG5Q9H222 651 aa15.43■□□□□ 0.06
SS18-209ENST00000578595 DCSTAMPQ9H295 470 aa15.43■□□□□ 0.06
SS18-209ENST00000578595 AP4M1O00189 453 aa15.42■□□□□ 0.06
SS18-209ENST00000578595 SSX5O60225 188 aa15.42■□□□□ 0.06
SS18-209ENST00000578595 IGHG2P01859 326 aa15.42■□□□□ 0.06
SS18-209ENST00000578595 OPN1MWP04001 364 aa15.42■□□□□ 0.06
SS18-209ENST00000578595 OPN1MW2P0DN77 364 aa15.42■□□□□ 0.06
SS18-209ENST00000578595 OPN1MW3P0DN78 364 aa15.42■□□□□ 0.06
SS18-209ENST00000578595 MC5RP33032 325 aa15.42■□□□□ 0.06
SS18-209ENST00000578595 SRSF7Q16629 238 aaKnown RBP eCLIP15.42■□□□□ 0.06
SS18-209ENST00000578595 TMEM69Q5SWH9 247 aa15.42■□□□□ 0.06
SS18-209ENST00000578595 Q6ZS49 121 aa15.42■□□□□ 0.06
SS18-209ENST00000578595 NAA50Q9GZZ1 169 aaKnown RBP15.42■□□□□ 0.06
SS18-209ENST00000578595 PLSCR3Q9NRY6 295 aa15.42■□□□□ 0.06
SS18-209ENST00000578595 COMMD3Q9UBI1 195 aa15.42■□□□□ 0.06
SS18-209ENST00000578595 ZNF107Q9UII5 783 aaPredicted RBP15.42■□□□□ 0.06
SS18-209ENST00000578595 TRRAPQ9Y4A5 3859 aa15.42■□□□□ 0.06
SS18-209ENST00000578595 MEIS3P1A6NDR6 274 aa15.41■□□□□ 0.06
SS18-209ENST00000578595 H0YJW9 148 aa15.41■□□□□ 0.06
SS18-209ENST00000578595 DIRAS3O95661 229 aa15.41■□□□□ 0.06
SS18-209ENST00000578595 CTXN2P0C2S0 81 aa15.41■□□□□ 0.06
SS18-209ENST00000578595 PF4V1P10720 104 aa15.41■□□□□ 0.06
SS18-209ENST00000578595 PTHLHP12272 177 aa15.41■□□□□ 0.06
SS18-209ENST00000578595 STPG2Q8N412 459 aa15.41■□□□□ 0.06
SS18-209ENST00000578595 FAM71E2Q8N5Q1 922 aa15.41■□□□□ 0.06
SS18-209ENST00000578595 ZNF436-AS1Q8NC38 126 aaPredicted RBP15.41■□□□□ 0.06
SS18-209ENST00000578595 WIPF2Q8TF74 440 aaPredicted RBP15.41■□□□□ 0.06
SS18-209ENST00000578595 RITA1Q96K30 269 aa15.41■□□□□ 0.06
SS18-209ENST00000578595 HSPB9Q9BQS6 159 aa15.41■□□□□ 0.06
SS18-209ENST00000578595 AUNIPQ9H7T9 357 aa15.41■□□□□ 0.06
SS18-209ENST00000578595 IFT46Q9NQC8 304 aa15.41■□□□□ 0.06
SS18-209ENST00000578595 LINC01548A6NM66 108 aa15.4■□□□□ 0.06
SS18-209ENST00000578595 VDAC1P21796 283 aa15.4■□□□□ 0.06
SS18-209ENST00000578595 NFYAP23511 347 aaPredicted RBP15.4■□□□□ 0.06
SS18-209ENST00000578595 CBX3Q13185 183 aa15.4■□□□□ 0.06
SS18-209ENST00000578595 CNIH2Q6PI25 160 aa15.4■□□□□ 0.06
SS18-209ENST00000578595 H1FOOQ8IZA3 346 aaPredicted RBP15.4■□□□□ 0.06
SS18-209ENST00000578595 GVQW1Q8N7I0 195 aa15.4■□□□□ 0.06
SS18-209ENST00000578595 BEST4Q8NFU0 473 aa15.4■□□□□ 0.06
SS18-209ENST00000578595 OR4F17Q8NGA8 305 aa15.4■□□□□ 0.06
SS18-209ENST00000578595 ABHD5Q8WTS1 349 aa15.4■□□□□ 0.06
SS18-209ENST00000578595 KCTD12Q96CX2 325 aaKnown RBP15.4■□□□□ 0.06
SS18-209ENST00000578595 OR4F4Q96R69 305 aa15.4■□□□□ 0.06
SS18-209ENST00000578595 PARP11Q9NR21 331 aa15.4■□□□□ 0.06
SS18-209ENST00000578595 SLC35D1Q9NTN3 355 aa15.4■□□□□ 0.06
SS18-209ENST00000578595 SDHAF2Q9NX18 166 aa15.4■□□□□ 0.06
SS18-209ENST00000578595 ANXA10Q9UJ72 324 aa15.4■□□□□ 0.06
SS18-209ENST00000578595 TSSC4Q9Y5U2 329 aaPredicted RBP15.4■□□□□ 0.06
SS18-209ENST00000578595 GABARAPO95166 117 aa15.39■□□□□ 0.05
SS18-209ENST00000578595 RORCP51449 518 aa15.39■□□□□ 0.05
SS18-209ENST00000578595 LINC00205P59089 165 aa15.39■□□□□ 0.05
SS18-209ENST00000578595 RPS16P62249 146 aaKnown RBP15.39■□□□□ 0.05
SS18-209ENST00000578595 ANKRD13BQ86YJ7 626 aa15.39■□□□□ 0.05
SS18-209ENST00000578595 GON7Q9BXV9 100 aa15.39■□□□□ 0.05
SS18-209ENST00000578595 TOLLIPQ9H0E2 274 aa15.39■□□□□ 0.05
SS18-209ENST00000578595 FBXL15Q9H469 300 aa15.39■□□□□ 0.05
SS18-209ENST00000578595 NOTCH1P46531 2555 aa15.38■□□□□ 0.05
SS18-209ENST00000578595 SMIM31A0A1B0GVY4 71 aa15.38■□□□□ 0.05
SS18-209ENST00000578595 XRCC3O43542 346 aa15.38■□□□□ 0.05
SS18-209ENST00000578595 RBBP9O75884 186 aa15.38■□□□□ 0.05
SS18-209ENST00000578595 PF4P02776 101 aa15.38■□□□□ 0.05
SS18-209ENST00000578595 LUMP51884 338 aaPredicted RBP15.38■□□□□ 0.05
SS18-209ENST00000578595 TAS2R20P59543 309 aa15.38■□□□□ 0.05
SS18-209ENST00000578595 CD83Q01151 205 aa15.38■□□□□ 0.05
SS18-209ENST00000578595 C5orf64Q2M2E5 130 aa15.38■□□□□ 0.05
SS18-209ENST00000578595 ZNF383Q8NA42 475 aa15.38■□□□□ 0.05
SS18-209ENST00000578595 OR5AN1Q8NGI8 311 aa15.38■□□□□ 0.05
SS18-209ENST00000578595 CLCC1Q96S66 551 aa15.38■□□□□ 0.05
SS18-209ENST00000578595 NUDT19A8MXV4 375 aa15.37■□□□□ 0.05
SS18-209ENST00000578595 FAM25AB3EWG3 89 aa15.37■□□□□ 0.05
SS18-209ENST00000578595 FAM25CB3EWG5 89 aa15.37■□□□□ 0.05
SS18-209ENST00000578595 FAM25GB3EWG6 89 aa15.37■□□□□ 0.05
SS18-209ENST00000578595 EIF4EP06730 217 aaKnown RBP15.37■□□□□ 0.05
SS18-209ENST00000578595 CBX5P45973 191 aa15.37■□□□□ 0.05
SS18-209ENST00000578595 TCTEX1D4Q5JR98 221 aa15.37■□□□□ 0.05
SS18-209ENST00000578595 LIN54Q6MZP7 749 aa15.37■□□□□ 0.05
SS18-209ENST00000578595 MZT2AQ6P582 158 aa15.37■□□□□ 0.05
SS18-209ENST00000578595 PDPNQ86YL7 162 aa15.37■□□□□ 0.05
SS18-209ENST00000578595 CLVS1Q8IUQ0 354 aaPredicted RBP15.37■□□□□ 0.05
SS18-209ENST00000578595 TSNAXQ99598 290 aaKnown RBP15.37■□□□□ 0.05
SS18-209ENST00000578595 METTL1Q9UBP6 276 aaKnown RBP15.37■□□□□ 0.05
SS18-209ENST00000578595 MRPS7Q9Y2R9 242 aaKnown RBP15.37■□□□□ 0.05
SS18-209ENST00000578595 NOTCH3Q9UM47 2321 aa15.37■□□□□ 0.05
SS18-209ENST00000578595 RRHO14718 337 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms