RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 PRSS3P2Q8NHM4 247 aa7.24□□□□□ -1.25
CIITA-208ENST00000572665 CCDC107Q8WV48 283 aa7.24□□□□□ -1.25
CIITA-208ENST00000572665 TMEM170AQ8WVE7 144 aa7.24□□□□□ -1.25
CIITA-208ENST00000572665 ZNF184Q99676 751 aaPredicted RBP7.24□□□□□ -1.25
CIITA-208ENST00000572665 SMPD3Q9NY59 655 aaPredicted RBP7.24□□□□□ -1.25
CIITA-208ENST00000572665 MSRB1Q9NZV6 116 aa7.24□□□□□ -1.25
CIITA-208ENST00000572665 KIAA1456Q9P272 454 aa7.24□□□□□ -1.25
CIITA-208ENST00000572665 LINC00527Q9UJ94 153 aa7.24□□□□□ -1.25
CIITA-208ENST00000572665 LRRC42Q9Y546 428 aa7.24□□□□□ -1.25
CIITA-208ENST00000572665 IGHV3-72A0A0B4J1Y9 119 aa7.23□□□□□ -1.25
CIITA-208ENST00000572665 OGG1O15527 345 aa7.23□□□□□ -1.25
CIITA-208ENST00000572665 GPX5O75715 221 aa7.23□□□□□ -1.25
CIITA-208ENST00000572665 IGHG4P01861 327 aa7.23□□□□□ -1.25
CIITA-208ENST00000572665 OR8U8P0C7N1 319 aa7.23□□□□□ -1.25
CIITA-208ENST00000572665 MAPK3P27361 379 aaPredicted RBP7.23□□□□□ -1.25
CIITA-208ENST00000572665 SSBP2P81877 361 aaPredicted RBP7.23□□□□□ -1.25
CIITA-208ENST00000572665 SRSF7Q16629 238 aaKnown RBP eCLIP7.23□□□□□ -1.25
CIITA-208ENST00000572665 UTF1Q5T230 341 aa7.23□□□□□ -1.25
CIITA-208ENST00000572665 C10orf25Q5T742 122 aa7.23□□□□□ -1.25
CIITA-208ENST00000572665 SYT6Q5T7P8 510 aaPredicted RBP7.23□□□□□ -1.25
CIITA-208ENST00000572665 MORN5Q5VZ52 161 aa7.23□□□□□ -1.25
CIITA-208ENST00000572665 TTC23Q5W5X9 447 aa7.23□□□□□ -1.25
CIITA-208ENST00000572665 AWAT2Q6E213 333 aa7.23□□□□□ -1.25
CIITA-208ENST00000572665 RAB12Q6IQ22 244 aa7.23□□□□□ -1.25
CIITA-208ENST00000572665 C11orf87Q6NUJ2 197 aa7.23□□□□□ -1.25
CIITA-208ENST00000572665 JAGN1Q8N5M9 183 aa7.23□□□□□ -1.25
CIITA-208ENST00000572665 NKAIN3Q8N8D7 197 aa7.23□□□□□ -1.25
CIITA-208ENST00000572665 C4orf3Q8WVX3 66 aa7.23□□□□□ -1.25
CIITA-208ENST00000572665 ST6GALNAC6Q969X2 333 aa7.23□□□□□ -1.25
CIITA-208ENST00000572665 TMEM80Q96HE8 168 aa7.23□□□□□ -1.25
CIITA-208ENST00000572665 GHRLQ9UBU3 117 aa7.23□□□□□ -1.25
CIITA-208ENST00000572665 DIMT1Q9UNQ2 313 aaKnown RBP7.23□□□□□ -1.25
CIITA-208ENST00000572665 MRPS28Q9Y2Q9 187 aaKnown RBP7.23□□□□□ -1.25
CIITA-208ENST00000572665 IGHV3-43A0A0B4J1X8 118 aa7.22□□□□□ -1.25
CIITA-208ENST00000572665 TRAV39A0A0B4J263 110 aa7.22□□□□□ -1.25
CIITA-208ENST00000572665 CBY3A6NI87 242 aa7.22□□□□□ -1.25
CIITA-208ENST00000572665 SEC14L6B5MCN3 397 aa7.22□□□□□ -1.25
CIITA-208ENST00000572665 LANCL1O43813 399 aa7.22□□□□□ -1.25
CIITA-208ENST00000572665 ATP6V1G2O95670 118 aa7.22□□□□□ -1.25
CIITA-208ENST00000572665 IGF1P05019 195 aa7.22□□□□□ -1.25
CIITA-208ENST00000572665 IGHV3-43DP0DP04 118 aa7.22□□□□□ -1.25
CIITA-208ENST00000572665 IGFBP3P17936 291 aaPredicted RBP7.22□□□□□ -1.25
CIITA-208ENST00000572665 FUT3P21217 361 aa7.22□□□□□ -1.25
CIITA-208ENST00000572665 TNFSF8P32971 234 aa7.22□□□□□ -1.25
CIITA-208ENST00000572665 CAPGP40121 348 aa7.22□□□□□ -1.25
CIITA-208ENST00000572665 ETV1P50549 477 aa7.22□□□□□ -1.25
CIITA-208ENST00000572665 ADARB1P78563 741 aaKnown RBP7.22□□□□□ -1.25
CIITA-208ENST00000572665 MMDQ15546 238 aa7.22□□□□□ -1.25
CIITA-208ENST00000572665 TBCEQ15813 527 aaPredicted RBP7.22□□□□□ -1.25
CIITA-208ENST00000572665 FAM27D1Q5T7N8 215 aa7.22□□□□□ -1.25
CIITA-208ENST00000572665 GLIPR1L1Q6UWM5 242 aa7.22□□□□□ -1.25
CIITA-208ENST00000572665 FAM71E2Q8N5Q1 922 aa7.22□□□□□ -1.25
CIITA-208ENST00000572665 TMEM104Q8NE00 496 aa7.22□□□□□ -1.25
CIITA-208ENST00000572665 RGP1Q92546 391 aaPredicted RBP7.22□□□□□ -1.25
CIITA-208ENST00000572665 GHSRQ92847 366 aa7.22□□□□□ -1.25
CIITA-208ENST00000572665 UBE2E2Q96LR5 201 aa7.22□□□□□ -1.25
CIITA-208ENST00000572665 ZNF251Q9BRH9 671 aa7.22□□□□□ -1.25
CIITA-208ENST00000572665 CST11Q9H112 138 aa7.22□□□□□ -1.25
CIITA-208ENST00000572665 OR2S2Q9NQN1 319 aa7.22□□□□□ -1.25
CIITA-208ENST00000572665 RCC2Q9P258 522 aaKnown RBP7.22□□□□□ -1.25
CIITA-208ENST00000572665 ZNF107Q9UII5 783 aaPredicted RBP7.22□□□□□ -1.25
CIITA-208ENST00000572665 JPT1Q9UK76 154 aa7.22□□□□□ -1.25
CIITA-208ENST00000572665 RRP15Q9Y3B9 282 aaKnown RBP7.22□□□□□ -1.25
CIITA-208ENST00000572665 PEX16Q9Y5Y5 336 aa7.22□□□□□ -1.25
CIITA-208ENST00000572665 U3KQK5 164 aa7.22□□□□□ -1.25
CIITA-208ENST00000572665 TRBV5-5A0A0J9YX44 114 aa7.21□□□□□ -1.26
CIITA-208ENST00000572665 PGPEP1LA6NFU8 196 aa7.21□□□□□ -1.26
CIITA-208ENST00000572665 C12orf77C9JDV5 145 aa7.21□□□□□ -1.26
CIITA-208ENST00000572665 CRTAPO75718 401 aaPredicted RBP7.21□□□□□ -1.26
CIITA-208ENST00000572665 HBZP02008 142 aa7.21□□□□□ -1.26
CIITA-208ENST00000572665 CLEC3BP05452 202 aa7.21□□□□□ -1.26
CIITA-208ENST00000572665 UBBP0CG47 229 aa7.21□□□□□ -1.26
CIITA-208ENST00000572665 RANBP1P43487 201 aa7.21□□□□□ -1.26
CIITA-208ENST00000572665 HTD2P86397 168 aa7.21□□□□□ -1.26
CIITA-208ENST00000572665 SERTAD4-AS1Q5TG53 156 aa7.21□□□□□ -1.26
CIITA-208ENST00000572665 OR2G6Q5TZ20 316 aa7.21□□□□□ -1.26
CIITA-208ENST00000572665 DMKNQ6E0U4 476 aaPredicted RBP7.21□□□□□ -1.26
CIITA-208ENST00000572665 C18orf65Q6ZTR6 163 aa7.21□□□□□ -1.26
CIITA-208ENST00000572665 OR11H1Q8NG94 326 aa7.21□□□□□ -1.26
CIITA-208ENST00000572665 OR4K15Q8NH41 348 aa7.21□□□□□ -1.26
CIITA-208ENST00000572665 APH1BQ8WW43 257 aa7.21□□□□□ -1.26
CIITA-208ENST00000572665 GALMQ96C23 342 aa7.21□□□□□ -1.26
CIITA-208ENST00000572665 KCTD7Q96MP8 289 aa7.21□□□□□ -1.26
CIITA-208ENST00000572665 DUX3Q96PT4 197 aa7.21□□□□□ -1.26
CIITA-208ENST00000572665 UQCC2Q9BRT2 126 aa7.21□□□□□ -1.26
CIITA-208ENST00000572665 KRTAP4-2Q9BYR5 136 aa7.21□□□□□ -1.26
CIITA-208ENST00000572665 SELENOIQ9C0D9 397 aa7.21□□□□□ -1.26
CIITA-208ENST00000572665 VCXQ9H320 206 aa7.21□□□□□ -1.26
CIITA-208ENST00000572665 GHITMQ9H3K2 345 aa7.21□□□□□ -1.26
CIITA-208ENST00000572665 PLSCR3Q9NRY6 295 aa7.21□□□□□ -1.26
CIITA-208ENST00000572665 ABRACLQ9P1F3 81 aa7.21□□□□□ -1.26
CIITA-208ENST00000572665 VSIG4Q9Y279 399 aa7.21□□□□□ -1.26
CIITA-208ENST00000572665 ZNF256Q9Y2P7 627 aaPredicted RBP7.21□□□□□ -1.26
CIITA-208ENST00000572665 EFCAB10A6NFE3 127 aa7.2□□□□□ -1.26
CIITA-208ENST00000572665 MYL12BO14950 172 aa7.2□□□□□ -1.26
CIITA-208ENST00000572665 YPEL1O60688 119 aa7.2□□□□□ -1.26
CIITA-208ENST00000572665 PDCD6O75340 191 aa7.2□□□□□ -1.26
CIITA-208ENST00000572665 WBP4O75554 376 aaKnown RBP7.2□□□□□ -1.26
CIITA-208ENST00000572665 SC5DO75845 299 aa7.2□□□□□ -1.26
CIITA-208ENST00000572665 MAS1P04201 325 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms