RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 TRDCB7Z8K6 153 aa11.58□□□□□ -0.56
CLN3-213ENST00000565047 I3L521 148 aa11.58□□□□□ -0.56
CLN3-213ENST00000565047 MFNGO00587 321 aa11.58□□□□□ -0.56
CLN3-213ENST00000565047 FCN1O00602 326 aa11.58□□□□□ -0.56
CLN3-213ENST00000565047 SOX15O60248 233 aa11.58□□□□□ -0.56
CLN3-213ENST00000565047 RAB6AP20340 208 aa11.58□□□□□ -0.56
CLN3-213ENST00000565047 ZNF491Q8N8L2 437 aa11.58□□□□□ -0.56
CLN3-213ENST00000565047 ZNF383Q8NA42 475 aa11.58□□□□□ -0.56
CLN3-213ENST00000565047 C4orf3Q8WVX3 66 aa11.58□□□□□ -0.56
CLN3-213ENST00000565047 RNF5Q99942 180 aa11.58□□□□□ -0.56
CLN3-213ENST00000565047 WSB1Q9Y6I7 421 aa11.58□□□□□ -0.56
CLN3-213ENST00000565047 COL7A1Q02388 2944 aa11.57□□□□□ -0.56
CLN3-213ENST00000565047 A0A0B4J203 849 aa11.57□□□□□ -0.56
CLN3-213ENST00000565047 RRHO14718 337 aa11.57□□□□□ -0.56
CLN3-213ENST00000565047 PDCD5O14737 125 aa11.57□□□□□ -0.56
CLN3-213ENST00000565047 IGKV1-16P04430 117 aa11.57□□□□□ -0.56
CLN3-213ENST00000565047 FCGR3AP08637 254 aa11.57□□□□□ -0.56
CLN3-213ENST00000565047 CD3GP09693 182 aa11.57□□□□□ -0.56
CLN3-213ENST00000565047 OR5H8P0DN80 308 aa11.57□□□□□ -0.56
CLN3-213ENST00000565047 FGF9P31371 208 aaPredicted RBP11.57□□□□□ -0.56
CLN3-213ENST00000565047 MC5RP33032 325 aa11.57□□□□□ -0.56
CLN3-213ENST00000565047 CX3CL1P78423 397 aa11.57□□□□□ -0.56
CLN3-213ENST00000565047 RUNX1Q01196 453 aa11.57□□□□□ -0.56
CLN3-213ENST00000565047 ASPHD1Q5U4P2 390 aa11.57□□□□□ -0.56
CLN3-213ENST00000565047 C22orf42Q6IC83 251 aa11.57□□□□□ -0.56
CLN3-213ENST00000565047 OR10R2Q8NGX6 335 aa11.57□□□□□ -0.56
CLN3-213ENST00000565047 OR8U1Q8NH10 309 aa11.57□□□□□ -0.56
CLN3-213ENST00000565047 EDARADDQ8WWZ3 215 aa11.57□□□□□ -0.56
CLN3-213ENST00000565047 RAB3CQ96E17 227 aa11.57□□□□□ -0.56
CLN3-213ENST00000565047 UBE2E2Q96LR5 201 aa11.57□□□□□ -0.56
CLN3-213ENST00000565047 CABLES2Q9BTV7 478 aa11.57□□□□□ -0.56
CLN3-213ENST00000565047 MCRIP2Q9BUT9 160 aaKnown RBP11.57□□□□□ -0.56
CLN3-213ENST00000565047 FBXL15Q9H469 300 aa11.57□□□□□ -0.56
CLN3-213ENST00000565047 RDH8Q9NYR8 311 aa11.57□□□□□ -0.56
CLN3-213ENST00000565047 GAB2Q9UQC2 676 aa11.57□□□□□ -0.56
CLN3-213ENST00000565047 NUBP2Q9Y5Y2 271 aa11.57□□□□□ -0.56
CLN3-213ENST00000565047 TRBV6-7A0A0A0MS04 114 aa11.56□□□□□ -0.56
CLN3-213ENST00000565047 TRAV41A0A0B4J266 112 aa11.56□□□□□ -0.56
CLN3-213ENST00000565047 DIRAS3O95661 229 aa11.56□□□□□ -0.56
CLN3-213ENST00000565047 GNB3P16520 340 aa11.56□□□□□ -0.56
CLN3-213ENST00000565047 RAB3BP20337 219 aa11.56□□□□□ -0.56
CLN3-213ENST00000565047 RANBP1P43487 201 aa11.56□□□□□ -0.56
CLN3-213ENST00000565047 IGSF11Q5DX21 431 aa11.56□□□□□ -0.56
CLN3-213ENST00000565047 ZNF660Q6AZW8 331 aaPredicted RBP11.56□□□□□ -0.56
CLN3-213ENST00000565047 DRAXINQ8NBI3 349 aaPredicted RBP11.56□□□□□ -0.56
CLN3-213ENST00000565047 OR4A4PQ8NGN8 299 aa11.56□□□□□ -0.56
CLN3-213ENST00000565047 C5orf30Q96GV9 206 aa11.56□□□□□ -0.56
CLN3-213ENST00000565047 GPR61Q9BZJ8 451 aa11.56□□□□□ -0.56
CLN3-213ENST00000565047 GNB4Q9HAV0 340 aa11.56□□□□□ -0.56
CLN3-213ENST00000565047 SCOCQ9UIL1 159 aa11.56□□□□□ -0.56
CLN3-213ENST00000565047 RNF150Q9ULK6 438 aa11.56□□□□□ -0.56
CLN3-213ENST00000565047 WASHC3Q9Y3C0 194 aa11.56□□□□□ -0.56
CLN3-213ENST00000565047 HUWE1Q7Z6Z7 4374 aaKnown RBP11.56□□□□□ -0.56
CLN3-213ENST00000565047 FABP7O15540 132 aa11.55□□□□□ -0.56
CLN3-213ENST00000565047 RBBP9O75884 186 aa11.55□□□□□ -0.56
CLN3-213ENST00000565047 GSTT2P0CG29 244 aa11.55□□□□□ -0.56
CLN3-213ENST00000565047 GSTT2BP0CG30 244 aa11.55□□□□□ -0.56
CLN3-213ENST00000565047 HIST1H1DP16402 221 aaKnown RBP11.55□□□□□ -0.56
CLN3-213ENST00000565047 RAB9AP51151 201 aa11.55□□□□□ -0.56
CLN3-213ENST00000565047 SSBP2P81877 361 aaPredicted RBP11.55□□□□□ -0.56
CLN3-213ENST00000565047 PSG5Q15238 335 aa11.55□□□□□ -0.56
CLN3-213ENST00000565047 SRSF7Q16629 238 aaKnown RBP eCLIP11.55□□□□□ -0.56
CLN3-213ENST00000565047 Q6ZS49 121 aa11.55□□□□□ -0.56
CLN3-213ENST00000565047 YTHDF1Q9BYJ9 559 aaKnown RBP11.55□□□□□ -0.56
CLN3-213ENST00000565047 PARP11Q9NR21 331 aa11.55□□□□□ -0.56
CLN3-213ENST00000565047 TPSG1Q9NRR2 321 aa11.55□□□□□ -0.56
CLN3-213ENST00000565047 TXNL4BQ9NX01 149 aaKnown RBP11.55□□□□□ -0.56
CLN3-213ENST00000565047 ZNF230Q9UIE0 474 aaPredicted RBP11.55□□□□□ -0.56
CLN3-213ENST00000565047 ELF5Q9UKW6 265 aaPredicted RBP11.55□□□□□ -0.56
CLN3-213ENST00000565047 KMT2CQ8NEZ4 4911 aaKnown RBP11.54□□□□□ -0.56
CLN3-213ENST00000565047 IGKV1D-8A0A087WSZ0 117 aa11.54□□□□□ -0.56
CLN3-213ENST00000565047 HSPA12AO43301 675 aa11.54□□□□□ -0.56
CLN3-213ENST00000565047 SERPINB10P48595 397 aa11.54□□□□□ -0.56
CLN3-213ENST00000565047 ZNF562Q6V9R5 426 aa11.54□□□□□ -0.56
CLN3-213ENST00000565047 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.54□□□□□ -0.56
CLN3-213ENST00000565047 OR11H1Q8NG94 326 aa11.54□□□□□ -0.56
CLN3-213ENST00000565047 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.54□□□□□ -0.56
CLN3-213ENST00000565047 KIAA1456Q9P272 454 aa11.54□□□□□ -0.56
CLN3-213ENST00000565047 IGLV2-23P01705 113 aa11.53□□□□□ -0.56
CLN3-213ENST00000565047 CRYGBP07316 175 aa11.53□□□□□ -0.56
CLN3-213ENST00000565047 MYL9P24844 172 aa11.53□□□□□ -0.56
CLN3-213ENST00000565047 LUMP51884 338 aaPredicted RBP11.53□□□□□ -0.56
CLN3-213ENST00000565047 GNB1P62873 340 aa11.53□□□□□ -0.56
CLN3-213ENST00000565047 MRGPRG-AS1Q2M3A8 158 aa11.53□□□□□ -0.56
CLN3-213ENST00000565047 AKIRIN2Q53H80 203 aa11.53□□□□□ -0.56
CLN3-213ENST00000565047 PDPNQ86YL7 162 aa11.53□□□□□ -0.56
CLN3-213ENST00000565047 OR5M8Q8NGP6 311 aa11.53□□□□□ -0.56
CLN3-213ENST00000565047 MAFIPQ8WZ33 124 aa11.53□□□□□ -0.56
CLN3-213ENST00000565047 SDHAF2Q9NX18 166 aa11.53□□□□□ -0.56
CLN3-213ENST00000565047 VSIG4Q9Y279 399 aa11.53□□□□□ -0.56
CLN3-213ENST00000565047 SMIM30A4D0T7 59 aa11.52□□□□□ -0.57
CLN3-213ENST00000565047 NOTOA8MTQ0 251 aa11.52□□□□□ -0.57
CLN3-213ENST00000565047 ARPC1BO15143 372 aaKnown RBP11.52□□□□□ -0.57
CLN3-213ENST00000565047 TFAP2AP05549 437 aa11.52□□□□□ -0.57
CLN3-213ENST00000565047 GSTP1P09211 210 aaKnown RBP11.52□□□□□ -0.57
CLN3-213ENST00000565047 TCTEX1D1Q8N7M0 179 aa11.52□□□□□ -0.57
CLN3-213ENST00000565047 FCGR1BQ92637 280 aa11.52□□□□□ -0.57
CLN3-213ENST00000565047 METTL1Q9UBP6 276 aaKnown RBP11.52□□□□□ -0.57
CLN3-213ENST00000565047 ZNF221Q9UK13 617 aa11.52□□□□□ -0.57
CLN3-213ENST00000565047 STUB1Q9UNE7 303 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms