RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 PARP12Q9H0J9 701 aaKnown RBP10.59□□□□□ -0.71
CLK3-216ENST00000564468 RNF150Q9ULK6 438 aa10.59□□□□□ -0.71
CLK3-216ENST00000564468 GAB2Q9UQC2 676 aa10.59□□□□□ -0.71
CLK3-216ENST00000564468 WASHC3Q9Y3C0 194 aa10.59□□□□□ -0.71
CLK3-216ENST00000564468 PRKDCP78527 4128 aaKnown RBP10.58□□□□□ -0.72
CLK3-216ENST00000564468 TMEM235A6NFC5 223 aa10.58□□□□□ -0.72
CLK3-216ENST00000564468 H0YJW9 148 aa10.58□□□□□ -0.72
CLK3-216ENST00000564468 APOA2P02652 100 aa10.58□□□□□ -0.72
CLK3-216ENST00000564468 TFAP2AP05549 437 aa10.58□□□□□ -0.72
CLK3-216ENST00000564468 OR5H8P0DN80 308 aa10.58□□□□□ -0.72
CLK3-216ENST00000564468 LSM3P62310 102 aaKnown RBP10.58□□□□□ -0.72
CLK3-216ENST00000564468 TAGLNQ01995 201 aaKnown RBP10.58□□□□□ -0.72
CLK3-216ENST00000564468 KHDC1LQ5JSQ8 128 aa10.58□□□□□ -0.72
CLK3-216ENST00000564468 FAM131AQ6UXB0 335 aa10.58□□□□□ -0.72
CLK3-216ENST00000564468 NPBQ8NG41 125 aa10.58□□□□□ -0.72
CLK3-216ENST00000564468 OR5AN1Q8NGI8 311 aa10.58□□□□□ -0.72
CLK3-216ENST00000564468 OR5H6Q8NGV6 325 aa10.58□□□□□ -0.72
CLK3-216ENST00000564468 MAFIPQ8WZ33 124 aa10.58□□□□□ -0.72
CLK3-216ENST00000564468 KCTD12Q96CX2 325 aaKnown RBP10.58□□□□□ -0.72
CLK3-216ENST00000564468 S100A16Q96FQ6 103 aaKnown RBP10.58□□□□□ -0.72
CLK3-216ENST00000564468 NOL4LQ96MY1 436 aaPredicted RBP10.58□□□□□ -0.72
CLK3-216ENST00000564468 ST6GALNAC5Q9BVH7 336 aa10.58□□□□□ -0.72
CLK3-216ENST00000564468 FUNDC2Q9BWH2 189 aa10.58□□□□□ -0.72
CLK3-216ENST00000564468 ZFP57Q9NU63 452 aa10.58□□□□□ -0.72
CLK3-216ENST00000564468 ZNF107Q9UII5 783 aaPredicted RBP10.58□□□□□ -0.72
CLK3-216ENST00000564468 NOTCH3Q9UM47 2321 aa10.57□□□□□ -0.72
CLK3-216ENST00000564468 TRAV18A0A075B6X5 111 aa10.57□□□□□ -0.72
CLK3-216ENST00000564468 NDUFA3O95167 84 aa10.57□□□□□ -0.72
CLK3-216ENST00000564468 OR8U9P0C7N5 309 aa10.57□□□□□ -0.72
CLK3-216ENST00000564468 PF4V1P10720 104 aa10.57□□□□□ -0.72
CLK3-216ENST00000564468 SLC6A1P30531 599 aa10.57□□□□□ -0.72
CLK3-216ENST00000564468 RPS19P39019 145 aaKnown RBP10.57□□□□□ -0.72
CLK3-216ENST00000564468 CBX3Q13185 183 aa10.57□□□□□ -0.72
CLK3-216ENST00000564468 C5orf64Q2M2E5 130 aa10.57□□□□□ -0.72
CLK3-216ENST00000564468 LIN54Q6MZP7 749 aa10.57□□□□□ -0.72
CLK3-216ENST00000564468 TEX38Q6PEX7 206 aa10.57□□□□□ -0.72
CLK3-216ENST00000564468 CNIH2Q6PI25 160 aa10.57□□□□□ -0.72
CLK3-216ENST00000564468 PDPNQ86YL7 162 aa10.57□□□□□ -0.72
CLK3-216ENST00000564468 OR13F1Q8NGS4 319 aa10.57□□□□□ -0.72
CLK3-216ENST00000564468 OR8U1Q8NH10 309 aa10.57□□□□□ -0.72
CLK3-216ENST00000564468 NUDCD2Q8WVJ2 157 aa10.57□□□□□ -0.72
CLK3-216ENST00000564468 SLC25A38Q96DW6 304 aa10.57□□□□□ -0.72
CLK3-216ENST00000564468 OR2D2Q9H210 308 aa10.57□□□□□ -0.72
CLK3-216ENST00000564468 ZNF580Q9UK33 172 aa10.57□□□□□ -0.72
CLK3-216ENST00000564468 ELF5Q9UKW6 265 aaPredicted RBP10.57□□□□□ -0.72
CLK3-216ENST00000564468 A0A1W2PRX2 142 aa10.56□□□□□ -0.72
CLK3-216ENST00000564468 ADARB2-AS1A8MUL3 147 aa10.56□□□□□ -0.72
CLK3-216ENST00000564468 M0R1X1 148 aa10.56□□□□□ -0.72
CLK3-216ENST00000564468 SLC22A5O76082 557 aa10.56□□□□□ -0.72
CLK3-216ENST00000564468 HLA-DRB1P01911 266 aa10.56□□□□□ -0.72
CLK3-216ENST00000564468 IGF1P05019 195 aa10.56□□□□□ -0.72
CLK3-216ENST00000564468 VDAC1P21796 283 aa10.56□□□□□ -0.72
CLK3-216ENST00000564468 CBX5P45973 191 aa10.56□□□□□ -0.72
CLK3-216ENST00000564468 PLGLAQ15195 96 aa10.56□□□□□ -0.72
CLK3-216ENST00000564468 TCTEX1D4Q5JR98 221 aa10.56□□□□□ -0.72
CLK3-216ENST00000564468 UBE2NLQ5JXB2 153 aa10.56□□□□□ -0.72
CLK3-216ENST00000564468 HIST2H2BDQ6DRA6 164 aa10.56□□□□□ -0.72
CLK3-216ENST00000564468 GLDNQ6ZMI3 551 aaPredicted RBP10.56□□□□□ -0.72
CLK3-216ENST00000564468 ZNF329Q86UD4 541 aa10.56□□□□□ -0.72
CLK3-216ENST00000564468 H1FOOQ8IZA3 346 aaPredicted RBP10.56□□□□□ -0.72
CLK3-216ENST00000564468 SLC25A46Q96AG3 418 aa10.56□□□□□ -0.72
CLK3-216ENST00000564468 ADTRPQ96IZ2 230 aa10.56□□□□□ -0.72
CLK3-216ENST00000564468 TSNAXQ99598 290 aaKnown RBP10.56□□□□□ -0.72
CLK3-216ENST00000564468 MRPS26Q9BYN8 205 aaKnown RBP10.56□□□□□ -0.72
CLK3-216ENST00000564468 LINC00527Q9UJ94 153 aa10.56□□□□□ -0.72
CLK3-216ENST00000564468 CMYA5Q8N3K9 4069 aa10.55□□□□□ -0.72
CLK3-216ENST00000564468 LINC01548A6NM66 108 aa10.55□□□□□ -0.72
CLK3-216ENST00000564468 RRHO14718 337 aa10.55□□□□□ -0.72
CLK3-216ENST00000564468 XRCC3O43542 346 aa10.55□□□□□ -0.72
CLK3-216ENST00000564468 SPDEFO95238 335 aa10.55□□□□□ -0.72
CLK3-216ENST00000564468 PF4P02776 101 aa10.55□□□□□ -0.72
CLK3-216ENST00000564468 RRASP10301 218 aa10.55□□□□□ -0.72
CLK3-216ENST00000564468 TGFBR1P36897 503 aa10.55□□□□□ -0.72
CLK3-216ENST00000564468 THBS3P49746 956 aa10.55□□□□□ -0.72
CLK3-216ENST00000564468 LUMP51884 338 aaPredicted RBP10.55□□□□□ -0.72
CLK3-216ENST00000564468 RPS16P62249 146 aaKnown RBP10.55□□□□□ -0.72
CLK3-216ENST00000564468 CXorf66Q5JRM2 361 aaPredicted RBP10.55□□□□□ -0.72
CLK3-216ENST00000564468 C10orf99Q6UWK7 81 aa10.55□□□□□ -0.72
CLK3-216ENST00000564468 DRAXINQ8NBI3 349 aaPredicted RBP10.55□□□□□ -0.72
CLK3-216ENST00000564468 FLYWCH2Q96CP2 140 aaKnown RBP10.55□□□□□ -0.72
CLK3-216ENST00000564468 HSPB9Q9BQS6 159 aa10.55□□□□□ -0.72
CLK3-216ENST00000564468 SLC35D1Q9NTN3 355 aa10.55□□□□□ -0.72
CLK3-216ENST00000564468 SDHAF2Q9NX18 166 aa10.55□□□□□ -0.72
CLK3-216ENST00000564468 ANXA10Q9UJ72 324 aa10.55□□□□□ -0.72
CLK3-216ENST00000564468 IGKV1D-8A0A087WSZ0 117 aa10.54□□□□□ -0.72
CLK3-216ENST00000564468 SSX5O60225 188 aa10.54□□□□□ -0.72
CLK3-216ENST00000564468 PROP1O75360 226 aa10.54□□□□□ -0.72
CLK3-216ENST00000564468 ELANEP08246 267 aa10.54□□□□□ -0.72
CLK3-216ENST00000564468 CNTFRP26992 372 aa10.54□□□□□ -0.72
CLK3-216ENST00000564468 LGALS7P47929 136 aa10.54□□□□□ -0.72
CLK3-216ENST00000564468 ARPC4P59998 168 aa10.54□□□□□ -0.72
CLK3-216ENST00000564468 VBP1P61758 197 aa10.54□□□□□ -0.72
CLK3-216ENST00000564468 RPL23AP62750 156 aaKnown RBP10.54□□□□□ -0.72
CLK3-216ENST00000564468 FOXE3Q13461 319 aa10.54□□□□□ -0.72
CLK3-216ENST00000564468 RTL8BQ17RB0 113 aa10.54□□□□□ -0.72
CLK3-216ENST00000564468 ZNF660Q6AZW8 331 aaPredicted RBP10.54□□□□□ -0.72
CLK3-216ENST00000564468 ANKRD13BQ86YJ7 626 aa10.54□□□□□ -0.72
CLK3-216ENST00000564468 SAMD12Q8N8I0 201 aa10.54□□□□□ -0.72
CLK3-216ENST00000564468 ZNF383Q8NA42 475 aa10.54□□□□□ -0.72
CLK3-216ENST00000564468 BEST4Q8NFU0 473 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms