RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 RYDENQ9NUL5 291 aaKnown RBP11.33□□□□□ -0.6
CLK3-206ENST00000562078 MYO7BQ6PIF6 2116 aa11.33□□□□□ -0.6
CLK3-206ENST00000562078 DIRC3C9JPN6 131 aa11.32□□□□□ -0.6
CLK3-206ENST00000562078 IGHG1P01857 330 aa11.32□□□□□ -0.6
CLK3-206ENST00000562078 PSG1P11464 419 aa11.32□□□□□ -0.6
CLK3-206ENST00000562078 TNFSF4P23510 183 aa11.32□□□□□ -0.6
CLK3-206ENST00000562078 RIPPLY3P57055 190 aa11.32□□□□□ -0.6
CLK3-206ENST00000562078 LCN2P80188 198 aa11.32□□□□□ -0.6
CLK3-206ENST00000562078 ZNF468Q5VIY5 522 aaPredicted RBP11.32□□□□□ -0.6
CLK3-206ENST00000562078 RAET1LQ5VY80 246 aa11.32□□□□□ -0.6
CLK3-206ENST00000562078 KLHL24Q6TFL4 600 aa11.32□□□□□ -0.6
CLK3-206ENST00000562078 C1orf174Q8IYL3 243 aa11.32□□□□□ -0.6
CLK3-206ENST00000562078 RNF133Q8WVZ7 376 aa11.32□□□□□ -0.6
CLK3-206ENST00000562078 BCL2L2Q92843 193 aaPredicted RBP11.32□□□□□ -0.6
CLK3-206ENST00000562078 STARD4Q96DR4 205 aa11.32□□□□□ -0.6
CLK3-206ENST00000562078 SLAMF6Q96DU3 332 aa11.32□□□□□ -0.6
CLK3-206ENST00000562078 SAMD10Q9BYL1 202 aa11.32□□□□□ -0.6
CLK3-206ENST00000562078 ZNF286AQ9HBT8 521 aa11.32□□□□□ -0.6
CLK3-206ENST00000562078 PROK2Q9HC23 129 aa11.32□□□□□ -0.6
CLK3-206ENST00000562078 PLEKHJ1Q9NW61 149 aa11.32□□□□□ -0.6
CLK3-206ENST00000562078 IL19Q9UHD0 177 aa11.32□□□□□ -0.6
CLK3-206ENST00000562078 HMGB3O15347 200 aaKnown RBP11.32□□□□□ -0.6
CLK3-206ENST00000562078 ADAM20O43506 726 aa11.32□□□□□ -0.6
CLK3-206ENST00000562078 CHST1O43916 411 aa11.32□□□□□ -0.6
CLK3-206ENST00000562078 LIFP15018 202 aa11.32□□□□□ -0.6
CLK3-206ENST00000562078 ZNF17P17021 662 aa11.32□□□□□ -0.6
CLK3-206ENST00000562078 CDAP32320 146 aa11.32□□□□□ -0.6
CLK3-206ENST00000562078 PSMF1Q92530 271 aa11.32□□□□□ -0.6
CLK3-206ENST00000562078 POLR1DQ9Y2S0 133 aa11.32□□□□□ -0.6
CLK3-206ENST00000562078 TRAV30A0A087WSZ9 112 aa11.31□□□□□ -0.6
CLK3-206ENST00000562078 DUXBA0A1W2PPF3 345 aa11.31□□□□□ -0.6
CLK3-206ENST00000562078 WNT2P09544 360 aa11.31□□□□□ -0.6
CLK3-206ENST00000562078 BAXQ07812 192 aa11.31□□□□□ -0.6
CLK3-206ENST00000562078 MFAP5Q13361 173 aa11.31□□□□□ -0.6
CLK3-206ENST00000562078 PPP1R32Q7Z5V6 425 aa11.31□□□□□ -0.6
CLK3-206ENST00000562078 MRPL30Q8TCC3 161 aaKnown RBP11.31□□□□□ -0.6
CLK3-206ENST00000562078 GATAD1Q8WUU5 269 aa11.31□□□□□ -0.6
CLK3-206ENST00000562078 BET1LQ9NYM9 111 aa11.31□□□□□ -0.6
CLK3-206ENST00000562078 IFNA1P01562 189 aa11.31□□□□□ -0.6
CLK3-206ENST00000562078 SERPINA7P05543 415 aa11.31□□□□□ -0.6
CLK3-206ENST00000562078 BMP5P22003 454 aa11.31□□□□□ -0.6
CLK3-206ENST00000562078 TMEM267Q0VDI3 215 aaPredicted RBP11.31□□□□□ -0.6
CLK3-206ENST00000562078 S100A7AQ86SG5 101 aa11.31□□□□□ -0.6
CLK3-206ENST00000562078 OXGR1Q96P68 337 aa11.31□□□□□ -0.6
CLK3-206ENST00000562078 ZDHHC11Q9H8X9 412 aa11.31□□□□□ -0.6
CLK3-206ENST00000562078 NECAP2Q9NVZ3 263 aa11.31□□□□□ -0.6
CLK3-206ENST00000562078 CLN8Q9UBY8 286 aa11.31□□□□□ -0.6
CLK3-206ENST00000562078 LHFPL6Q9Y693 200 aa11.31□□□□□ -0.6
CLK3-206ENST00000562078 IFNA5P01569 189 aa11.3□□□□□ -0.6
CLK3-206ENST00000562078 DTYMKP23919 212 aa11.3□□□□□ -0.6
CLK3-206ENST00000562078 TSPOP30536 169 aa11.3□□□□□ -0.6
CLK3-206ENST00000562078 PPP1CBP62140 327 aa11.3□□□□□ -0.6
CLK3-206ENST00000562078 CRIP3Q6Q6R5 217 aa11.3□□□□□ -0.6
CLK3-206ENST00000562078 TMEM144Q7Z5S9 345 aa11.3□□□□□ -0.6
CLK3-206ENST00000562078 GPHA2Q96T91 129 aa11.3□□□□□ -0.6
CLK3-206ENST00000562078 SPRY4Q9C004 299 aa11.3□□□□□ -0.6
CLK3-206ENST00000562078 ZNF430Q9H8G1 570 aaPredicted RBP11.3□□□□□ -0.6
CLK3-206ENST00000562078 SH2D2AQ9NP31 389 aa11.3□□□□□ -0.6
CLK3-206ENST00000562078 IGHV3-15A0A0B4J1V0 119 aa11.3□□□□□ -0.6
CLK3-206ENST00000562078 A0A0G2JMM0 328 aa11.3□□□□□ -0.6
CLK3-206ENST00000562078 A0A1W2PPB8 328 aa11.3□□□□□ -0.6
CLK3-206ENST00000562078 A0A1W2PRS3 328 aa11.3□□□□□ -0.6
CLK3-206ENST00000562078 KIR3DP1A8MWS1 328 aa11.3□□□□□ -0.6
CLK3-206ENST00000562078 MDH2P40926 338 aaKnown RBP11.3□□□□□ -0.6
CLK3-206ENST00000562078 LHX2P50458 406 aa11.3□□□□□ -0.6
CLK3-206ENST00000562078 MRPL49Q13405 166 aaKnown RBP11.3□□□□□ -0.6
CLK3-206ENST00000562078 KISS1Q15726 138 aa11.3□□□□□ -0.6
CLK3-206ENST00000562078 ASCL5Q7RTU5 278 aa11.3□□□□□ -0.6
CLK3-206ENST00000562078 WFDC8Q8IUA0 241 aa11.3□□□□□ -0.6
CLK3-206ENST00000562078 OR4F5Q8NH21 305 aa11.3□□□□□ -0.6
CLK3-206ENST00000562078 OR4F4Q96R69 305 aa11.3□□□□□ -0.6
CLK3-206ENST00000562078 CNOT1A5YKK6 2376 aaKnown RBP11.29□□□□□ -0.6
CLK3-206ENST00000562078 C3orf85A0A1B0GTC6 90 aa11.29□□□□□ -0.6
CLK3-206ENST00000562078 A0A1W2PR80 420 aa11.29□□□□□ -0.6
CLK3-206ENST00000562078 J3QW42 95 aa11.29□□□□□ -0.6
CLK3-206ENST00000562078 PAX9P55771 341 aa11.29□□□□□ -0.6
CLK3-206ENST00000562078 DSCR4P56555 118 aaPredicted RBP11.29□□□□□ -0.6
CLK3-206ENST00000562078 Q0VFX4 171 aa11.29□□□□□ -0.6
CLK3-206ENST00000562078 Q5PR19 223 aa11.29□□□□□ -0.6
CLK3-206ENST00000562078 TNFRSF14Q92956 283 aa11.29□□□□□ -0.6
CLK3-206ENST00000562078 LHX4Q969G2 390 aa11.29□□□□□ -0.6
CLK3-206ENST00000562078 SIGLEC12Q96PQ1 595 aa11.29□□□□□ -0.6
CLK3-206ENST00000562078 WNT10AQ9GZT5 417 aa11.29□□□□□ -0.6
CLK3-206ENST00000562078 PTPRBP23467 1997 aa11.29□□□□□ -0.6
CLK3-206ENST00000562078 OR6C6A6NF89 314 aa11.29□□□□□ -0.6
CLK3-206ENST00000562078 ZIC3O60481 467 aa11.29□□□□□ -0.6
CLK3-206ENST00000562078 WDR1O75083 606 aa11.29□□□□□ -0.6
CLK3-206ENST00000562078 BRICD5Q6PL45 260 aa11.29□□□□□ -0.6
CLK3-206ENST00000562078 BAGE3Q86Y29 109 aa11.29□□□□□ -0.6
CLK3-206ENST00000562078 BAGE2Q86Y30 109 aa11.29□□□□□ -0.6
CLK3-206ENST00000562078 ZNF695Q8IW36 515 aa11.29□□□□□ -0.6
CLK3-206ENST00000562078 UCN2Q96RP3 112 aa11.29□□□□□ -0.6
CLK3-206ENST00000562078 MED13Q9UHV7 2174 aa11.29□□□□□ -0.6
CLK3-206ENST00000562078 C1QTNF9BB2RNN3 333 aa11.28□□□□□ -0.6
CLK3-206ENST00000562078 HS3ST1O14792 307 aa11.28□□□□□ -0.6
CLK3-206ENST00000562078 NBEAP1P0C6P0 100 aa11.28□□□□□ -0.6
CLK3-206ENST00000562078 ESDP10768 282 aa11.28□□□□□ -0.6
CLK3-206ENST00000562078 CRISP2P16562 243 aa11.28□□□□□ -0.6
CLK3-206ENST00000562078 CBLN1P23435 193 aa11.28□□□□□ -0.6
CLK3-206ENST00000562078 FKBP2P26885 142 aaKnown RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms