RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 OR10G9Q8NGN4 311 aa13.75□□□□□ -0.21
SHMT2-232ENST00000557487 OR10G7Q8NGN6 311 aa13.75□□□□□ -0.21
SHMT2-232ENST00000557487 RPUSD4Q96CM3 377 aaKnown RBP13.75□□□□□ -0.21
SHMT2-232ENST00000557487 ZNF488Q96MN9 340 aa13.75□□□□□ -0.21
SHMT2-232ENST00000557487 PRO1933Q9H354 126 aa13.75□□□□□ -0.21
SHMT2-232ENST00000557487 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-232ENST00000557487 VPS13AQ96RL7 3174 aa13.75□□□□□ -0.21
SHMT2-232ENST00000557487 A0A1B0GV90 55 aa13.74□□□□□ -0.21
SHMT2-232ENST00000557487 ST8SIA5O15466 376 aa13.74□□□□□ -0.21
SHMT2-232ENST00000557487 IGKV1D-33P01593 117 aa13.74□□□□□ -0.21
SHMT2-232ENST00000557487 IGKV1-33P01594 117 aa13.74□□□□□ -0.21
SHMT2-232ENST00000557487 P0C879 139 aa13.74□□□□□ -0.21
SHMT2-232ENST00000557487 ZNF883P0CG24 379 aa13.74□□□□□ -0.21
SHMT2-232ENST00000557487 OTX2P32243 289 aa13.74□□□□□ -0.21
SHMT2-232ENST00000557487 CLDN18P56856 261 aa13.74□□□□□ -0.21
SHMT2-232ENST00000557487 CATR1Q13166 79 aa13.74□□□□□ -0.21
SHMT2-232ENST00000557487 BEND4Q6ZU67 534 aa13.74□□□□□ -0.21
SHMT2-232ENST00000557487 ZNF645Q8N7E2 425 aa13.74□□□□□ -0.21
SHMT2-232ENST00000557487 ZNF709Q8N972 641 aa13.74□□□□□ -0.21
SHMT2-232ENST00000557487 OR10P1Q8NGE3 313 aa13.74□□□□□ -0.21
SHMT2-232ENST00000557487 NANOS1Q8WY41 292 aaKnown RBP13.74□□□□□ -0.21
SHMT2-232ENST00000557487 FSCN3Q9NQT6 498 aa13.74□□□□□ -0.21
SHMT2-232ENST00000557487 TM4SF5O14894 197 aa13.74□□□□□ -0.21
SHMT2-232ENST00000557487 WDR1O75083 606 aa13.74□□□□□ -0.21
SHMT2-232ENST00000557487 JMJD7P0C870 316 aa13.74□□□□□ -0.21
SHMT2-232ENST00000557487 IDH3GP51553 393 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-232ENST00000557487 ERVK11-1P61568 191 aa13.74□□□□□ -0.21
SHMT2-232ENST00000557487 OR8G2PQ6IF36 304 aa13.74□□□□□ -0.21
SHMT2-232ENST00000557487 ACSM6Q6P461 480 aa13.74□□□□□ -0.21
SHMT2-232ENST00000557487 OR4F5Q8NH21 305 aa13.74□□□□□ -0.21
SHMT2-232ENST00000557487 OR4F4Q96R69 305 aa13.74□□□□□ -0.21
SHMT2-232ENST00000557487 ZNF703Q9H7S9 590 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-232ENST00000557487 KCNIP1Q9NZI2 227 aa13.74□□□□□ -0.21
SHMT2-232ENST00000557487 OR6C3Q9NZP0 311 aa13.74□□□□□ -0.21
SHMT2-232ENST00000557487 GVINP1Q7Z2Y8 2422 aa13.73□□□□□ -0.21
SHMT2-232ENST00000557487 PINLYPA6NC86 204 aa13.73□□□□□ -0.21
SHMT2-232ENST00000557487 LRRC30A6NM36 301 aa13.73□□□□□ -0.21
SHMT2-232ENST00000557487 SH2D1BO14796 132 aa13.73□□□□□ -0.21
SHMT2-232ENST00000557487 CER1O95813 267 aa13.73□□□□□ -0.21
SHMT2-232ENST00000557487 OR2H2O95918 312 aa13.73□□□□□ -0.21
SHMT2-232ENST00000557487 GYPAP02724 150 aa13.73□□□□□ -0.21
SHMT2-232ENST00000557487 ZNF146Q15072 292 aa13.73□□□□□ -0.21
SHMT2-232ENST00000557487 C9orf135Q5VTT2 229 aa13.73□□□□□ -0.21
SHMT2-232ENST00000557487 C17orf78Q8N4C9 275 aa13.73□□□□□ -0.21
SHMT2-232ENST00000557487 DIRC2Q96SL1 478 aa13.73□□□□□ -0.21
SHMT2-232ENST00000557487 CHODLQ9H9P2 273 aa13.73□□□□□ -0.21
SHMT2-232ENST00000557487 NCKAP5O14513 1909 aa13.73□□□□□ -0.21
SHMT2-232ENST00000557487 PTPRZ1P23471 2315 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-232ENST00000557487 ZNF503-AS2A6NEH8 195 aa13.72□□□□□ -0.21
SHMT2-232ENST00000557487 PDE6DO43924 150 aa13.72□□□□□ -0.21
SHMT2-232ENST00000557487 CD55P08174 381 aa13.72□□□□□ -0.21
SHMT2-232ENST00000557487 GZMHP20718 246 aa13.72□□□□□ -0.21
SHMT2-232ENST00000557487 TUBG1P23258 451 aa13.72□□□□□ -0.21
SHMT2-232ENST00000557487 ERVS71-1P61550 626 aa13.72□□□□□ -0.21
SHMT2-232ENST00000557487 IQCJQ1A5X6 159 aa13.72□□□□□ -0.21
SHMT2-232ENST00000557487 FFAR4Q5NUL3 377 aa13.72□□□□□ -0.21
SHMT2-232ENST00000557487 FIP1L1Q6UN15 594 aaKnown RBP13.72□□□□□ -0.21
SHMT2-232ENST00000557487 FAM180AQ6UWF9 173 aa13.72□□□□□ -0.21
SHMT2-232ENST00000557487 OR2M7Q8NG81 312 aa13.72□□□□□ -0.21
SHMT2-232ENST00000557487 TXNDC17Q9BRA2 123 aa13.72□□□□□ -0.21
SHMT2-232ENST00000557487 PCGF1Q9BSM1 259 aa13.72□□□□□ -0.21
SHMT2-232ENST00000557487 SLC25A22Q9H936 323 aa13.72□□□□□ -0.21
SHMT2-232ENST00000557487 PMS2P5A8MQ11 134 aa13.72□□□□□ -0.21
SHMT2-232ENST00000557487 RAB29O14966 203 aa13.72□□□□□ -0.21
SHMT2-232ENST00000557487 TMPRSS2O15393 492 aa13.72□□□□□ -0.21
SHMT2-232ENST00000557487 RAC2P15153 192 aa13.72□□□□□ -0.21
SHMT2-232ENST00000557487 SSX2Q16385 188 aa13.72□□□□□ -0.21
SHMT2-232ENST00000557487 ZNF664Q8N3J9 261 aa13.72□□□□□ -0.21
SHMT2-232ENST00000557487 WDR31Q8NA23 367 aa13.72□□□□□ -0.21
SHMT2-232ENST00000557487 OR1K1Q8NGR3 316 aa13.72□□□□□ -0.21
SHMT2-232ENST00000557487 A0A1W2PPQ1 181 aa13.71□□□□□ -0.21
SHMT2-232ENST00000557487 RHBDL1O75783 438 aa13.71□□□□□ -0.21
SHMT2-232ENST00000557487 CA6P23280 308 aa13.71□□□□□ -0.21
SHMT2-232ENST00000557487 WNT5AP41221 380 aa13.71□□□□□ -0.21
SHMT2-232ENST00000557487 GNB2P62879 340 aa13.71□□□□□ -0.21
SHMT2-232ENST00000557487 HNF4GQ14541 408 aa13.71□□□□□ -0.21
SHMT2-232ENST00000557487 SLC10A1Q14973 349 aa13.71□□□□□ -0.21
SHMT2-232ENST00000557487 DCAF12Q5T6F0 453 aa13.71□□□□□ -0.21
SHMT2-232ENST00000557487 RAB1CQ92928 201 aa13.71□□□□□ -0.21
SHMT2-232ENST00000557487 PI4KAP42356 2102 aa13.71□□□□□ -0.22
SHMT2-232ENST00000557487 A0A1W2PR80 420 aa13.7□□□□□ -0.22
SHMT2-232ENST00000557487 TMEM30CPA0ZSE6 113 aa13.7□□□□□ -0.22
SHMT2-232ENST00000557487 F6UZH7 168 aa13.7□□□□□ -0.22
SHMT2-232ENST00000557487 SIRPB1O00241 398 aa13.7□□□□□ -0.22
SHMT2-232ENST00000557487 MLNRO43193 412 aa13.7□□□□□ -0.22
SHMT2-232ENST00000557487 CLDN14O95500 239 aa13.7□□□□□ -0.22
SHMT2-232ENST00000557487 MDKP21741 143 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-232ENST00000557487 SPCS3P61009 180 aa13.7□□□□□ -0.22
SHMT2-232ENST00000557487 SRYQ05066 204 aa13.7□□□□□ -0.22
SHMT2-232ENST00000557487 EIF4EBP1Q13541 118 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-232ENST00000557487 NECAP1Q8NC96 275 aa13.7□□□□□ -0.22
SHMT2-232ENST00000557487 GALMQ96C23 342 aa13.7□□□□□ -0.22
SHMT2-232ENST00000557487 LURAP1Q96LR2 239 aa13.7□□□□□ -0.22
SHMT2-232ENST00000557487 TAAR6Q96RI8 345 aa13.7□□□□□ -0.22
SHMT2-232ENST00000557487 ZPBPQ9BS86 351 aa13.7□□□□□ -0.22
SHMT2-232ENST00000557487 NPCDR1Q9BY65 106 aa13.7□□□□□ -0.22
SHMT2-232ENST00000557487 CNN1P51911 297 aaKnown RBP13.7□□□□□ -0.22
SHMT2-232ENST00000557487 IGFBP7Q16270 282 aa13.7□□□□□ -0.22
SHMT2-232ENST00000557487 GABRA6Q16445 453 aa13.7□□□□□ -0.22
SHMT2-232ENST00000557487 C6orf15Q6UXA7 325 aaPredicted RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms