RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 C5orf66Q9H5L9 145 aa11.81□□□□□ -0.52
SHMT2-210ENST00000553950 GPN1Q9HCN4 374 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-210ENST00000553950 DPM3Q9P2X0 92 aa11.81□□□□□ -0.52
SHMT2-210ENST00000553950 VSIG4Q9Y279 399 aa11.81□□□□□ -0.52
SHMT2-210ENST00000553950 IGHV1-69DA0A0B4J2H0 117 aa11.8□□□□□ -0.52
SHMT2-210ENST00000553950 INMT-MINDY4F8WBC2 141 aa11.8□□□□□ -0.52
SHMT2-210ENST00000553950 NPFFO15130 113 aa11.8□□□□□ -0.52
SHMT2-210ENST00000553950 IGHV1-69P01742 117 aa11.8□□□□□ -0.52
SHMT2-210ENST00000553950 IGHV3-7P01780 117 aa11.8□□□□□ -0.52
SHMT2-210ENST00000553950 GNRHRP30968 328 aa11.8□□□□□ -0.52
SHMT2-210ENST00000553950 ZNF134P52741 427 aa11.8□□□□□ -0.52
SHMT2-210ENST00000553950 SRPXP78539 464 aa11.8□□□□□ -0.52
SHMT2-210ENST00000553950 ZNF816Q0VGE8 651 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-210ENST00000553950 HCP5Q6MZN7 132 aa11.8□□□□□ -0.52
SHMT2-210ENST00000553950 TGIF2LXQ8IUE1 241 aa11.8□□□□□ -0.52
SHMT2-210ENST00000553950 OR8H3Q8N146 312 aa11.8□□□□□ -0.52
SHMT2-210ENST00000553950 NANPQ8TBE9 248 aa11.8□□□□□ -0.52
SHMT2-210ENST00000553950 CD300LFQ8TDQ1 290 aa11.8□□□□□ -0.52
SHMT2-210ENST00000553950 RTN4IP1Q8WWV3 396 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-210ENST00000553950 ABHD14BQ96IU4 210 aa11.8□□□□□ -0.52
SHMT2-210ENST00000553950 CCL28Q9NRJ3 127 aa11.8□□□□□ -0.52
SHMT2-210ENST00000553950 FAM212BQ9NTI7 297 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-210ENST00000553950 SDHAF2Q9NX18 166 aa11.8□□□□□ -0.52
SHMT2-210ENST00000553950 KCNIP3Q9Y2W7 256 aa11.8□□□□□ -0.52
SHMT2-210ENST00000553950 PRELID3BQ9Y3B1 194 aa11.8□□□□□ -0.52
SHMT2-210ENST00000553950 CSMD1Q96PZ7 3565 aa11.79□□□□□ -0.52
SHMT2-210ENST00000553950 TRAV6A0A075B6T7 132 aa11.79□□□□□ -0.52
SHMT2-210ENST00000553950 TEX13DA0A0J9YY54 714 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-210ENST00000553950 A0A1W2PPE3 182 aa11.79□□□□□ -0.52
SHMT2-210ENST00000553950 CRYM-AS1A6NIL9 109 aa11.79□□□□□ -0.52
SHMT2-210ENST00000553950 M0R1X1 148 aa11.79□□□□□ -0.52
SHMT2-210ENST00000553950 APOA2P02652 100 aa11.79□□□□□ -0.52
SHMT2-210ENST00000553950 GAPDHP04406 335 aaKnown RBP11.79□□□□□ -0.52
SHMT2-210ENST00000553950 RAB13P51153 203 aa11.79□□□□□ -0.52
SHMT2-210ENST00000553950 PHLDA2Q53GA4 152 aa11.79□□□□□ -0.52
SHMT2-210ENST00000553950 TPTE2P1Q5T6R2 138 aa11.79□□□□□ -0.52
SHMT2-210ENST00000553950 SLC25A42Q86VD7 318 aa11.79□□□□□ -0.52
SHMT2-210ENST00000553950 ODF3L1Q8IXM7 274 aa11.79□□□□□ -0.52
SHMT2-210ENST00000553950 NAA60Q9H7X0 242 aa11.79□□□□□ -0.52
SHMT2-210ENST00000553950 TMEM160Q9NX00 188 aa11.79□□□□□ -0.52
SHMT2-210ENST00000553950 RNF150Q9ULK6 438 aa11.79□□□□□ -0.52
SHMT2-210ENST00000553950 CENPVL3A0A0U1RRI6 287 aa11.78□□□□□ -0.52
SHMT2-210ENST00000553950 H0Y980 276 aa11.78□□□□□ -0.52
SHMT2-210ENST00000553950 IL5P05113 134 aa11.78□□□□□ -0.52
SHMT2-210ENST00000553950 RRASP10301 218 aa11.78□□□□□ -0.52
SHMT2-210ENST00000553950 AKR1C4P17516 323 aa11.78□□□□□ -0.52
SHMT2-210ENST00000553950 SAA4P35542 130 aa11.78□□□□□ -0.52
SHMT2-210ENST00000553950 RTL8BQ17RB0 113 aa11.78□□□□□ -0.52
SHMT2-210ENST00000553950 C4orf46Q504U0 113 aa11.78□□□□□ -0.52
SHMT2-210ENST00000553950 DHRS7BQ6IAN0 325 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-210ENST00000553950 FAM53AQ6NSI3 398 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-210ENST00000553950 TCTEX1D2Q8WW35 142 aa11.78□□□□□ -0.52
SHMT2-210ENST00000553950 ST6GALNAC6Q969X2 333 aa11.78□□□□□ -0.52
SHMT2-210ENST00000553950 MALSU1Q96EH3 234 aa11.78□□□□□ -0.52
SHMT2-210ENST00000553950 GALNT14Q96FL9 552 aa11.78□□□□□ -0.52
SHMT2-210ENST00000553950 RTBDNQ9BSG5 229 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-210ENST00000553950 A8MV72 311 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-210ENST00000553950 MPPED1O15442 326 aa11.77□□□□□ -0.53
SHMT2-210ENST00000553950 RBFOX2O43251 390 aaKnown RBP eCLIP11.77□□□□□ -0.535e-15■■■■■ 33.3
SHMT2-210ENST00000553950 ATG12O94817 140 aa11.77□□□□□ -0.53
SHMT2-210ENST00000553950 IGLV2-14P01704 120 aa11.77□□□□□ -0.53
SHMT2-210ENST00000553950 HLA-AP01891 365 aaKnown RBP11.77□□□□□ -0.53
SHMT2-210ENST00000553950 OR4E1P0C645 316 aa11.77□□□□□ -0.53
SHMT2-210ENST00000553950 CD99P14209 185 aa11.77□□□□□ -0.53
SHMT2-210ENST00000553950 RPA2P15927 270 aa11.77□□□□□ -0.53
SHMT2-210ENST00000553950 PI3P19957 117 aa11.77□□□□□ -0.53
SHMT2-210ENST00000553950 VAMP1P23763 118 aa11.77□□□□□ -0.53
SHMT2-210ENST00000553950 F2RP25116 425 aa11.77□□□□□ -0.53
SHMT2-210ENST00000553950 MC5RP33032 325 aa11.77□□□□□ -0.53
SHMT2-210ENST00000553950 DUTP33316 252 aaKnown RBP11.77□□□□□ -0.53
SHMT2-210ENST00000553950 DHODHQ02127 395 aa11.77□□□□□ -0.53
SHMT2-210ENST00000553950 RPL39P5Q59GN2 51 aa11.77□□□□□ -0.53
SHMT2-210ENST00000553950 TBC1D26Q86UD7 250 aa11.77□□□□□ -0.53
SHMT2-210ENST00000553950 LDLRAD3Q86YD5 345 aa11.77□□□□□ -0.53
SHMT2-210ENST00000553950 NUP50Q9UKX7 468 aa11.77□□□□□ -0.53
SHMT2-210ENST00000553950 VPS13CQ709C8 3753 aa11.77□□□□□ -0.53
SHMT2-210ENST00000553950 C3orf85A0A1B0GTC6 90 aa11.76□□□□□ -0.53
SHMT2-210ENST00000553950 SNRPGP15A8MWD9 76 aa11.76□□□□□ -0.53
SHMT2-210ENST00000553950 CREBL2O60519 120 aaPredicted RBP11.76□□□□□ -0.53
SHMT2-210ENST00000553950 PGLYRP1O75594 196 aaPredicted RBP11.76□□□□□ -0.53
SHMT2-210ENST00000553950 FSHBP01225 129 aa11.76□□□□□ -0.53
SHMT2-210ENST00000553950 IFNA2P01563 188 aa11.76□□□□□ -0.53
SHMT2-210ENST00000553950 FBP1P09467 338 aa11.76□□□□□ -0.53
SHMT2-210ENST00000553950 ANXA7P20073 488 aaKnown RBP11.76□□□□□ -0.53
SHMT2-210ENST00000553950 DLX1P56177 255 aa11.76□□□□□ -0.53
SHMT2-210ENST00000553950 EIF4EBP1Q13541 118 aaPredicted RBP11.76□□□□□ -0.53
SHMT2-210ENST00000553950 UTF1Q5T230 341 aa11.76□□□□□ -0.53
SHMT2-210ENST00000553950 C9orf139Q6ZV77 190 aa11.76□□□□□ -0.53
SHMT2-210ENST00000553950 LYG2Q86SG7 212 aa11.76□□□□□ -0.53
SHMT2-210ENST00000553950 PDPNQ86YL7 162 aa11.76□□□□□ -0.53
SHMT2-210ENST00000553950 OR51H1Q8NH63 302 aa11.76□□□□□ -0.53
SHMT2-210ENST00000553950 OR4S2Q8NH73 311 aa11.76□□□□□ -0.53
SHMT2-210ENST00000553950 COQ8AQ8NI60 647 aa11.76□□□□□ -0.53
SHMT2-210ENST00000553950 ZNF251Q9BRH9 671 aa11.76□□□□□ -0.53
SHMT2-210ENST00000553950 AIFM2Q9BRQ8 373 aa11.76□□□□□ -0.53
SHMT2-210ENST00000553950 TMUB1Q9BVT8 246 aa11.76□□□□□ -0.53
SHMT2-210ENST00000553950 FLVCR2Q9UPI3 526 aa11.76□□□□□ -0.53
SHMT2-210ENST00000553950 FAM96BQ9Y3D0 163 aa11.76□□□□□ -0.53
SHMT2-210ENST00000553950 LY6LH3BQJ8 138 aa11.75□□□□□ -0.53
SHMT2-210ENST00000553950 TNFSF12O43508 249 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms