RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 ADAMTSL1Q8N6G6 1762 aa2.6□□□□□ -1.99
SCFD1-209ENST00000553280 IGSF23A1L1A6 192 aa2.6□□□□□ -1.99
SCFD1-209ENST00000553280 DCTN3O75935 186 aa2.6□□□□□ -1.99
SCFD1-209ENST00000553280 ZNF22P17026 224 aaPredicted RBP2.6□□□□□ -1.99
SCFD1-209ENST00000553280 CA7P43166 264 aa2.6□□□□□ -1.99
SCFD1-209ENST00000553280 BAMBIQ13145 260 aa2.6□□□□□ -1.99
SCFD1-209ENST00000553280 SPIN3Q5JUX0 258 aa2.6□□□□□ -1.99
SCFD1-209ENST00000553280 CLVS2Q5SYC1 327 aa2.6□□□□□ -1.99
SCFD1-209ENST00000553280 SDIM1Q6ZPB5 146 aa2.6□□□□□ -1.99
SCFD1-209ENST00000553280 MFSD8Q8NHS3 518 aa2.6□□□□□ -1.99
SCFD1-209ENST00000553280 ANKRD36BP1Q96IX9 119 aa2.6□□□□□ -1.99
SCFD1-209ENST00000553280 HIGD2AQ9BW72 106 aa2.6□□□□□ -1.99
SCFD1-209ENST00000553280 VPREB3Q9UKI3 123 aa2.6□□□□□ -1.99
SCFD1-209ENST00000553280 HHLA2Q9UM44 414 aa2.6□□□□□ -1.99
SCFD1-209ENST00000553280 CHD2O14647 1828 aaKnown RBP2.6□□□□□ -1.99
SCFD1-209ENST00000553280 THSD7AQ9UPZ6 1657 aa2.6□□□□□ -1.99
SCFD1-209ENST00000553280 NUP205Q92621 2012 aa2.59□□□□□ -1.99
SCFD1-209ENST00000553280 COL18A1P39060 1754 aa2.59□□□□□ -1.99
SCFD1-209ENST00000553280 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP2.59□□□□□ -1.99
SCFD1-209ENST00000553280 M0R381 172 aa2.59□□□□□ -1.99
SCFD1-209ENST00000553280 MT-CO2P00403 227 aa2.59□□□□□ -1.99
SCFD1-209ENST00000553280 IGLV6-57P01721 117 aa2.59□□□□□ -1.99
SCFD1-209ENST00000553280 CRYGDP07320 174 aa2.59□□□□□ -1.99
SCFD1-209ENST00000553280 JOSD1Q15040 202 aaPredicted RBP2.59□□□□□ -1.99
SCFD1-209ENST00000553280 RSU1Q15404 277 aa2.59□□□□□ -1.99
SCFD1-209ENST00000553280 CST6Q15828 149 aa2.59□□□□□ -1.99
SCFD1-209ENST00000553280 ACSM3Q53FZ2 586 aa2.59□□□□□ -1.99
SCFD1-209ENST00000553280 C1orf195Q5TG92 126 aa2.59□□□□□ -1.99
SCFD1-209ENST00000553280 UBL4BQ8N7F7 174 aa2.59□□□□□ -1.99
SCFD1-209ENST00000553280 MUC7Q8TAX7 377 aa2.59□□□□□ -1.99
SCFD1-209ENST00000553280 CPNE2Q96FN4 548 aaPredicted RBP2.59□□□□□ -1.99
SCFD1-209ENST00000553280 SLC35G5Q96KT7 338 aa2.59□□□□□ -1.99
SCFD1-209ENST00000553280 EVC2Q86UK5 1308 aa2.59□□□□□ -2
SCFD1-209ENST00000553280 KIF15Q9NS87 1388 aa2.59□□□□□ -2
SCFD1-209ENST00000553280 SNAPC4Q5SXM2 1469 aa2.58□□□□□ -2
SCFD1-209ENST00000553280 GSTZ1O43708 216 aaPredicted RBP2.58□□□□□ -2
SCFD1-209ENST00000553280 REG1AP05451 166 aa2.58□□□□□ -2
SCFD1-209ENST00000553280 ZNF7P17097 686 aaPredicted RBP2.58□□□□□ -2
SCFD1-209ENST00000553280 CCR7P32248 378 aa2.58□□□□□ -2
SCFD1-209ENST00000553280 CEBPGP53567 150 aa2.58□□□□□ -2
SCFD1-209ENST00000553280 CTBP2P56545 445 aa2.58□□□□□ -2
SCFD1-209ENST00000553280 TMEM33P57088 247 aa2.58□□□□□ -2
SCFD1-209ENST00000553280 NAA20P61599 178 aa2.58□□□□□ -2
SCFD1-209ENST00000553280 FAM78BQ5VT40 261 aa2.58□□□□□ -2
SCFD1-209ENST00000553280 OR10K2Q6IF99 312 aa2.58□□□□□ -2
SCFD1-209ENST00000553280 NOXRED1Q6NXP6 359 aa2.58□□□□□ -2
SCFD1-209ENST00000553280 CALHM3Q86XJ0 350 aa2.58□□□□□ -2
SCFD1-209ENST00000553280 BAP18Q8IXM2 172 aa2.58□□□□□ -2
SCFD1-209ENST00000553280 LY6G5BQ8NDX9 201 aa2.58□□□□□ -2
SCFD1-209ENST00000553280 OR1M1Q8NGA1 313 aa2.58□□□□□ -2
SCFD1-209ENST00000553280 OR10P1Q8NGE3 313 aa2.58□□□□□ -2
SCFD1-209ENST00000553280 TMA16Q96EY4 203 aaKnown RBP2.58□□□□□ -2
SCFD1-209ENST00000553280 OR8B2Q96RD0 313 aa2.58□□□□□ -2
SCFD1-209ENST00000553280 STACQ99469 402 aa2.58□□□□□ -2
SCFD1-209ENST00000553280 PKMYT1Q99640 499 aa2.58□□□□□ -2
SCFD1-209ENST00000553280 TMEM109Q9BVC6 243 aa2.58□□□□□ -2
SCFD1-209ENST00000553280 LCE3DQ9BYE3 92 aa2.58□□□□□ -2
SCFD1-209ENST00000553280 C11orf1Q9H5F2 150 aa2.58□□□□□ -2
SCFD1-209ENST00000553280 XPNPEP1Q9NQW7 623 aa2.58□□□□□ -2
SCFD1-209ENST00000553280 MCTS1Q9ULC4 181 aaKnown RBP2.58□□□□□ -2
SCFD1-209ENST00000553280 PTPRJQ12913 1337 aa2.58□□□□□ -2
SCFD1-209ENST00000553280 KCNK1O00180 336 aa2.57□□□□□ -2
SCFD1-209ENST00000553280 CDS2O95674 445 aa2.57□□□□□ -2
SCFD1-209ENST00000553280 COL8A2P25067 703 aa2.57□□□□□ -2
SCFD1-209ENST00000553280 TAS2R45P59539 299 aa2.57□□□□□ -2
SCFD1-209ENST00000553280 BTN3A2P78410 334 aa2.57□□□□□ -2
SCFD1-209ENST00000553280 EMX1Q04741 257 aaPredicted RBP2.57□□□□□ -2
SCFD1-209ENST00000553280 UAP1Q16222 522 aaPredicted RBP2.57□□□□□ -2
SCFD1-209ENST00000553280 GID4Q8IVV7 300 aa2.57□□□□□ -2
SCFD1-209ENST00000553280 C1orf174Q8IYL3 243 aa2.57□□□□□ -2
SCFD1-209ENST00000553280 OR2D3Q8NGH3 330 aa2.57□□□□□ -2
SCFD1-209ENST00000553280 LMX1AQ8TE12 382 aa2.57□□□□□ -2
SCFD1-209ENST00000553280 C16orf78Q8WTQ4 265 aa2.57□□□□□ -2
SCFD1-209ENST00000553280 ASB17Q8WXJ9 295 aa2.57□□□□□ -2
SCFD1-209ENST00000553280 OR51I1Q9H343 314 aa2.57□□□□□ -2
SCFD1-209ENST00000553280 OR51I2Q9H344 312 aa2.57□□□□□ -2
SCFD1-209ENST00000553280 TAS2R9Q9NYW1 312 aa2.57□□□□□ -2
SCFD1-209ENST00000553280 SHANK1Q9Y566 2161 aa2.57□□□□□ -2
SCFD1-209ENST00000553280 ATAD5Q96QE3 1844 aa2.56□□□□□ -2
SCFD1-209ENST00000553280 P0C880 135 aa2.56□□□□□ -2
SCFD1-209ENST00000553280 HIST1H1EP10412 219 aaKnown RBP2.56□□□□□ -2
SCFD1-209ENST00000553280 ESDP10768 282 aa2.56□□□□□ -2
SCFD1-209ENST00000553280 UCHL3P15374 230 aa2.56□□□□□ -2
SCFD1-209ENST00000553280 NPPCP23582 126 aa2.56□□□□□ -2
SCFD1-209ENST00000553280 CDKN2CP42773 168 aa2.56□□□□□ -2
SCFD1-209ENST00000553280 TCL1AP56279 114 aa2.56□□□□□ -2
SCFD1-209ENST00000553280 TSPEAR-AS2P59090 65 aa2.56□□□□□ -2
SCFD1-209ENST00000553280 KRTAP10-10P60014 251 aa2.56□□□□□ -2
SCFD1-209ENST00000553280 RAB5BP61020 215 aa2.56□□□□□ -2
SCFD1-209ENST00000553280 OR11H1Q8NG94 326 aa2.56□□□□□ -2
SCFD1-209ENST00000553280 PPP1R14BQ96C90 147 aa2.56□□□□□ -2
SCFD1-209ENST00000553280 OR52B2Q96RD2 323 aa2.56□□□□□ -2
SCFD1-209ENST00000553280 NKX6-2Q9C056 277 aaPredicted RBP2.56□□□□□ -2
SCFD1-209ENST00000553280 SMDT1Q9H4I9 107 aa2.56□□□□□ -2
SCFD1-209ENST00000553280 ZNF391Q9UJN7 358 aa2.56□□□□□ -2
SCFD1-209ENST00000553280 SNX12Q9UMY4 172 aa2.56□□□□□ -2
SCFD1-209ENST00000553280 NACADO15069 1562 aa2.56□□□□□ -2
SCFD1-209ENST00000553280 TMED7-TICAM2A0A0A6YYA0 188 aa2.55□□□□□ -2
SCFD1-209ENST00000553280 LOC102725191A0A1B0GVB3 256 aa2.55□□□□□ -2
SCFD1-209ENST00000553280 A0A1W2PNM2 257 aa2.55□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms