RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 TAF15Q92804 592 aaKnown RBP eCLIP6.3□□□□□ -1.4
LIMA1-213ENST00000552720 ZPBPQ9BS86 351 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 PSMG3Q9BT73 122 aaPredicted RBP6.3□□□□□ -1.4
LIMA1-213ENST00000552720 SLC25A22Q9H936 323 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 SDF2L1Q9HCN8 221 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 SIRT7Q9NRC8 400 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 MBNL3Q9NUK0 354 aaKnown RBP6.3□□□□□ -1.4
LIMA1-213ENST00000552720 GAR1Q9NY12 217 aaKnown RBP6.3□□□□□ -1.4
LIMA1-213ENST00000552720 FZR1Q9UM11 496 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 ATMQ13315 3056 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 ODAMA1E959 279 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 LRP5LA4QPB2 252 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 C17orf98A8MV24 154 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 C12orf77C9JDV5 145 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 MLNRO43193 412 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 ZG16O60844 167 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 AGFG2O95081 481 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 S1PR2O95136 353 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 HAND1O96004 215 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 IGHV1-2P23083 117 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 HBG1P69891 147 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 HBG2P69892 147 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 TNFRSF9Q07011 255 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 TFF3Q07654 80 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 TBC1D28Q2M2D7 210 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 TMEM41BQ5BJD5 291 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 DHRS13Q6UX07 377 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 HIST3H2BBQ8N257 126 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 ZNF383Q8NA42 475 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 LHX4Q969G2 390 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 RPUSD4Q96CM3 377 aaKnown RBP6.3□□□□□ -1.4
LIMA1-213ENST00000552720 PLPPR2Q96GM1 343 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 ABI3Q9P2A4 366 aa6.3□□□□□ -1.4
LIMA1-213ENST00000552720 RP1L1Q8IWN7 2480 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-213ENST00000552720 CXorf65A6NEN9 183 aa6.29□□□□□ -1.4
LIMA1-213ENST00000552720 ZNF737O75373 536 aa6.29□□□□□ -1.4
LIMA1-213ENST00000552720 CYB5R3P00387 301 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-213ENST00000552720 WNT2P09544 360 aa6.29□□□□□ -1.4
LIMA1-213ENST00000552720 BMP5P22003 454 aa6.29□□□□□ -1.4
LIMA1-213ENST00000552720 S100A2P29034 98 aa6.29□□□□□ -1.4
LIMA1-213ENST00000552720 RTP5Q14D33 572 aa6.29□□□□□ -1.4
LIMA1-213ENST00000552720 ZNF146Q15072 292 aa6.29□□□□□ -1.4
LIMA1-213ENST00000552720 ADIRFQ15847 76 aa6.29□□□□□ -1.4
LIMA1-213ENST00000552720 PRAMEF6Q5VXH4 476 aa6.29□□□□□ -1.4
LIMA1-213ENST00000552720 TMEM14EPQ6UXP3 125 aa6.29□□□□□ -1.4
LIMA1-213ENST00000552720 OR10G4Q8NGN3 311 aa6.29□□□□□ -1.4
LIMA1-213ENST00000552720 MRGPRDQ8TDS7 321 aa6.29□□□□□ -1.4
LIMA1-213ENST00000552720 ANAPC16Q96DE5 110 aa6.29□□□□□ -1.4
LIMA1-213ENST00000552720 DCTN5Q9BTE1 182 aa6.29□□□□□ -1.4
LIMA1-213ENST00000552720 UFSP2Q9NUQ7 469 aa6.29□□□□□ -1.4
LIMA1-213ENST00000552720 VAX2Q9UIW0 290 aa6.29□□□□□ -1.4
LIMA1-213ENST00000552720 WIPI2Q9Y4P8 454 aa6.29□□□□□ -1.4
LIMA1-213ENST00000552720 DEFB108AA8MXU0 73 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 KLRC4-KLRK1H3BQV0 150 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 CLDN34H7C241 214 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 SH2D1BO14796 132 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 PHOX2AO14813 284 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 FABP4P15090 132 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 SSTR5P35346 364 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 RND2P52198 227 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 NKX6-1P78426 367 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-213ENST00000552720 SERF2P84101 59 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 LTC4SQ16873 150 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 ZNF766Q5HY98 468 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 MOB1BQ7L9L4 216 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 MRGPRGQ86SM5 289 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 C1orf87Q8N0U7 546 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 RFESDQ8TAC1 157 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 COQ2Q96H96 371 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 SNX22Q96L94 193 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 GPR87Q9BY21 358 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 CDH20Q9HBT6 801 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 OBP2BQ9NPH6 170 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 SLC39A9Q9NUM3 307 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 TREM2Q9NZC2 230 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 KLF13Q9Y2Y9 288 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-213ENST00000552720 TRGV5A0A0B4J1U4 118 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 OR5H1A6NKK0 313 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 LINC00473A8K010 186 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 PMS2P5A8MQ11 134 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 PPP1R2P9O14990 202 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 TNFSF15O95150 251 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 LY86O95711 162 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 HBZP02008 142 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 COL8A2P25067 703 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 IL2RGP31785 369 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 ARG2P78540 354 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 C11orf53Q8IXP5 236 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 ZNF645Q8N7E2 425 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 KLF14Q8TD94 323 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-213ENST00000552720 NANOS1Q8WY41 292 aaKnown RBP6.28□□□□□ -1.4
LIMA1-213ENST00000552720 SMIM7Q9BQ49 75 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 ELOVL1Q9BW60 279 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 HSPB7Q9UBY9 170 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 POLDIP2Q9Y2S7 368 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 DSCAMO60469 2012 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 YLPM1P49750 1951 aaKnown RBP6.28□□□□□ -1.4
LIMA1-213ENST00000552720 DSCAML1Q8TD84 2053 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 ADGRG4Q8IZF6 3080 aa6.28□□□□□ -1.4
LIMA1-213ENST00000552720 CACNA1GO43497 2377 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms