RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	ZNF880	Q6PDB4	577 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	C6orf201	Q7Z4U5	140 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	SLC35E3	Q7Z769	313 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	FOXRED2	Q8IWF2	684 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	FAM89B	Q8N5H3	189 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	COMMD1	Q8N668	190 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	OR2AK2	Q8NG84	335 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	CT45A3	Q8NHU0	189 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	GALM	Q96C23	342 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	CYYR1	Q96J86	154 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	YPEL2	Q96QA6	119 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	LPAR5	Q9H1C0	372 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	RIMS4	Q9H426	269 aa	Predicted RBP	6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	PLEKHJ1	Q9NW61	149 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	ABRACL	Q9P1F3	81 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	HSF4	Q9ULV5	492 aa		6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	AK6	Q9Y3D8	172 aa	Known RBP	6.06	□□□□□ -1.44
SNHG1-223	ENST00000545440	SAA2-SAA4	A0A096LPE2	208 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440		A0A0A6YYD4	124 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	IGHV3-72	A0A0B4J1Y9	119 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	TRAV1-2	A0A0B4J238	106 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	FOXI3	A8MTJ6	420 aa	Predicted RBP	6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	SERPINE3	A8MV23	424 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440		G3V4G9	280 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	AP4M1	O00189	453 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	SAA2	P0DJI9	122 aa	Predicted RBP	6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	GAL	P22466	123 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	SLC6A1	P30531	599 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	PPP1CC	P36873	323 aa	Known RBP	6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	GPR12	P47775	334 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	SLC35B1	P78383	322 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	P2RY14	Q15391	338 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	SSX1	Q16384	188 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	CD200R1L	Q6Q8B3	271 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	C10orf99	Q6UWK7	81 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440		Q6ZPA2	131 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	ZNF833P	Q6ZTB9	187 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	ODF3L1	Q8IXM7	274 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	STPG2	Q8N412	459 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	FAM71E2	Q8N5Q1	922 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440		Q8N9W7	124 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	OR52L2P	Q8NGH6	319 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	FAAP24	Q9BTP7	215 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	GON7	Q9BXV9	100 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	ABCG5	Q9H222	651 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	IFI27L2	Q9H2X8	130 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440		Q9H521	79 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	C12orf4	Q9NQ89	552 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	STEAP1	Q9UHE8	339 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	ZNF580	Q9UK33	172 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	MGAT4A	Q9UM21	535 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440		V9GY05	133 aa		6.05	□□□□□ -1.44
SNHG1-223	ENST00000545440	TG	P01266	2768 aa		6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	TRDV1	A0A1B0GX56	115 aa		6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	NCBP2L	A6PVI3	153 aa	Known RBP	6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	ZNF736	B4DX44	427 aa	Predicted RBP	6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	ITGB1BP1	O14713	200 aa		6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	PDCD5	O14737	125 aa		6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	LDLRAD4	O15165	306 aa		6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	SOCS1	O15524	211 aa		6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	RRP9	O43818	475 aa	Known RBP	6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	NXPH3	O95157	252 aa		6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	MYL9	P24844	172 aa		6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	RPL23A	P62750	156 aa	Known RBP	6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	HLA-DRB3	P79483	266 aa		6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	PLAC9	Q5JTB6	97 aa		6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	UBE2U	Q5VVX9	321 aa		6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	ZNF329	Q86UD4	541 aa		6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	WFDC9	Q8NEX5	89 aa		6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	OR51D1	Q8NGF3	324 aa		6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	OR56B1	Q8NGI3	324 aa		6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	ABHD5	Q8WTS1	349 aa		6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	IL1F10	Q8WWZ1	152 aa		6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	FCGR1B	Q92637	280 aa		6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	FAM3D	Q96BQ1	224 aa		6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	NOL4L	Q96MY1	436 aa	Predicted RBP	6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	S1PR3	Q99500	378 aa		6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	MRPL20	Q9BYC9	149 aa	Known RBP	6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	GHITM	Q9H3K2	345 aa		6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	CHMP1A	Q9HD42	196 aa	Predicted RBP	6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	PLSCR3	Q9NRY6	295 aa		6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	PIPOX	Q9P0Z9	390 aa		6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	AK3	Q9UIJ7	227 aa		6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	TNC	P24821	2201 aa		6.04	□□□□□ -1.44
SNHG1-223	ENST00000545440	TMEM272	A0A1B0GTI8	110 aa		6.03	□□□□□ -1.44
SNHG1-223	ENST00000545440	OR5H14	A6NHG9	310 aa		6.03	□□□□□ -1.44
SNHG1-223	ENST00000545440	IFITM5	A6NNB3	132 aa		6.03	□□□□□ -1.44
SNHG1-223	ENST00000545440	MARCH11	A6NNE9	402 aa		6.03	□□□□□ -1.44
SNHG1-223	ENST00000545440	RAB29	O14966	203 aa		6.03	□□□□□ -1.44
SNHG1-223	ENST00000545440	DENR	O43583	198 aa	Known RBP	6.03	□□□□□ -1.44
SNHG1-223	ENST00000545440	DUS4L	O95620	317 aa	Known RBP	6.03	□□□□□ -1.44
SNHG1-223	ENST00000545440	ZBTB25	P24278	435 aa		6.03	□□□□□ -1.44
SNHG1-223	ENST00000545440	SOX6	P35712	828 aa		6.03	□□□□□ -1.44
SNHG1-223	ENST00000545440	VEGFC	P49767	419 aa		6.03	□□□□□ -1.44
SNHG1-223	ENST00000545440	CLDN12	P56749	244 aa		6.03	□□□□□ -1.44
SNHG1-223	ENST00000545440	FOXE3	Q13461	319 aa		6.03	□□□□□ -1.44
SNHG1-223	ENST00000545440	MMD	Q15546	238 aa		6.03	□□□□□ -1.44
SNHG1-223	ENST00000545440	HES5	Q5TA89	166 aa		6.03	□□□□□ -1.44
SNHG1-223	ENST00000545440	TEX38	Q6PEX7	206 aa		6.03	□□□□□ -1.44
SNHG1-223	ENST00000545440	SETD6	Q8TBK2	473 aa		6.03	□□□□□ -1.44

Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms