RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 CST11Q9H112 138 aa9.82□□□□□ -0.84
USP28-212ENST00000544750 SPACA1Q9HBV2 294 aa9.82□□□□□ -0.84
USP28-212ENST00000544750 KIAA1456Q9P272 454 aa9.82□□□□□ -0.84
USP28-212ENST00000544750 PEX16Q9Y5Y5 336 aa9.82□□□□□ -0.84
USP28-212ENST00000544750 TRAV1-2A0A0B4J238 106 aa9.81□□□□□ -0.84
USP28-212ENST00000544750 MCRIP1C9JLW8 97 aa9.81□□□□□ -0.84
USP28-212ENST00000544750 AIPO00170 330 aa9.81□□□□□ -0.84
USP28-212ENST00000544750 NBR2O15453 112 aa9.81□□□□□ -0.84
USP28-212ENST00000544750 HSPB1P04792 205 aaKnown RBP9.81□□□□□ -0.84
USP28-212ENST00000544750 GLAP06280 429 aa9.81□□□□□ -0.84
USP28-212ENST00000544750 FUT3P21217 361 aa9.81□□□□□ -0.84
USP28-212ENST00000544750 GALP22466 123 aa9.81□□□□□ -0.84
USP28-212ENST00000544750 PSMB9P28065 219 aa9.81□□□□□ -0.84
USP28-212ENST00000544750 OR10A3P58181 314 aa9.81□□□□□ -0.84
USP28-212ENST00000544750 NR2C2APQ86WQ0 139 aa9.81□□□□□ -0.84
USP28-212ENST00000544750 ODF3L1Q8IXM7 274 aa9.81□□□□□ -0.84
USP28-212ENST00000544750 NEK7Q8TDX7 302 aa9.81□□□□□ -0.84
USP28-212ENST00000544750 LPAR5Q9H1C0 372 aa9.81□□□□□ -0.84
USP28-212ENST00000544750 ETAA1Q9NY74 926 aa9.81□□□□□ -0.84
USP28-212ENST00000544750 STUB1Q9UNE7 303 aa9.81□□□□□ -0.84
USP28-212ENST00000544750 NUBP2Q9Y5Y2 271 aa9.81□□□□□ -0.84
USP28-212ENST00000544750 HECTD4Q9Y4D8 3996 aa9.81□□□□□ -0.84
USP28-212ENST00000544750 A0A1W2PN81 502 aa9.8□□□□□ -0.84
USP28-212ENST00000544750 UBE2QL1A1L167 161 aa9.8□□□□□ -0.84
USP28-212ENST00000544750 FOXI3A8MTJ6 420 aaPredicted RBP9.8□□□□□ -0.84
USP28-212ENST00000544750 IFNA6P05013 189 aa9.8□□□□□ -0.84
USP28-212ENST00000544750 EGR2P11161 476 aaPredicted RBP9.8□□□□□ -0.84
USP28-212ENST00000544750 CHRNA7P36544 502 aa9.8□□□□□ -0.84
USP28-212ENST00000544750 CLDN12P56749 244 aa9.8□□□□□ -0.84
USP28-212ENST00000544750 PLA2G7Q13093 441 aa9.8□□□□□ -0.84
USP28-212ENST00000544750 RAB11BQ15907 218 aa9.8□□□□□ -0.84
USP28-212ENST00000544750 ECSCRQ19T08 205 aa9.8□□□□□ -0.84
USP28-212ENST00000544750 TMEM30BQ3MIR4 351 aa9.8□□□□□ -0.84
USP28-212ENST00000544750 SYT6Q5T7P8 510 aaPredicted RBP9.8□□□□□ -0.84
USP28-212ENST00000544750 C22orf42Q6IC83 251 aa9.8□□□□□ -0.84
USP28-212ENST00000544750 LIN54Q6MZP7 749 aa9.8□□□□□ -0.84
USP28-212ENST00000544750 LINC00322Q6ZN03 302 aaPredicted RBP9.8□□□□□ -0.84
USP28-212ENST00000544750 OR10V1Q8NGI7 309 aa9.8□□□□□ -0.84
USP28-212ENST00000544750 OR4K15Q8NH41 348 aa9.8□□□□□ -0.84
USP28-212ENST00000544750 OR1L1Q8NH94 360 aa9.8□□□□□ -0.84
USP28-212ENST00000544750 KCNG3Q8TAE7 436 aa9.8□□□□□ -0.84
USP28-212ENST00000544750 MRPL30Q8TCC3 161 aaKnown RBP9.8□□□□□ -0.84
USP28-212ENST00000544750 FLYWCH2Q96CP2 140 aaKnown RBP9.8□□□□□ -0.84
USP28-212ENST00000544750 RHOVQ96L33 236 aa9.8□□□□□ -0.84
USP28-212ENST00000544750 NABP2Q9BQ15 211 aa9.8□□□□□ -0.84
USP28-212ENST00000544750 SULT4A1Q9BR01 284 aa9.8□□□□□ -0.84
USP28-212ENST00000544750 PLGRKTQ9HBL7 147 aa9.8□□□□□ -0.84
USP28-212ENST00000544750 FOXA2Q9Y261 457 aaPredicted RBP9.8□□□□□ -0.84
USP28-212ENST00000544750 V9GY05 133 aa9.8□□□□□ -0.84
USP28-212ENST00000544750 ARPC1BO15143 372 aaKnown RBP9.79□□□□□ -0.84
USP28-212ENST00000544750 IGHV3-11P01762 117 aa9.79□□□□□ -0.84
USP28-212ENST00000544750 HBZP02008 142 aa9.79□□□□□ -0.84
USP28-212ENST00000544750 ARSBP15848 533 aa9.79□□□□□ -0.84
USP28-212ENST00000544750 RCC1P18754 421 aaPredicted RBP9.79□□□□□ -0.84
USP28-212ENST00000544750 FGF9P31371 208 aaPredicted RBP9.79□□□□□ -0.84
USP28-212ENST00000544750 MORN2Q502X0 79 aa9.79□□□□□ -0.84
USP28-212ENST00000544750 HES5Q5TA89 166 aa9.79□□□□□ -0.84
USP28-212ENST00000544750 ZNF660Q6AZW8 331 aaPredicted RBP9.79□□□□□ -0.84
USP28-212ENST00000544750 C6orf201Q7Z4U5 140 aa9.79□□□□□ -0.84
USP28-212ENST00000544750 C5orf24Q7Z6I8 188 aa9.79□□□□□ -0.84
USP28-212ENST00000544750 FAM89BQ8N5H3 189 aa9.79□□□□□ -0.84
USP28-212ENST00000544750 TCTEX1D1Q8N7M0 179 aa9.79□□□□□ -0.84
USP28-212ENST00000544750 IL17DQ8TAD2 202 aa9.79□□□□□ -0.84
USP28-212ENST00000544750 ZNF251Q9BRH9 671 aa9.79□□□□□ -0.84
USP28-212ENST00000544750 ELOVL1Q9BW60 279 aa9.79□□□□□ -0.84
USP28-212ENST00000544750 MRPL20Q9BYC9 149 aaKnown RBP9.79□□□□□ -0.84
USP28-212ENST00000544750 HIPK2Q9H2X6 1198 aa9.79□□□□□ -0.84
USP28-212ENST00000544750 MBNL3Q9NUK0 354 aaKnown RBP9.79□□□□□ -0.84
USP28-212ENST00000544750 TXNL4BQ9NX01 149 aaKnown RBP9.79□□□□□ -0.84
USP28-212ENST00000544750 GNG12Q9UBI6 72 aa9.79□□□□□ -0.84
USP28-212ENST00000544750 TMEM272A0A1B0GTI8 110 aa9.78□□□□□ -0.84
USP28-212ENST00000544750 SOCS1O15524 211 aa9.78□□□□□ -0.84
USP28-212ENST00000544750 SPINT2O43291 252 aa9.78□□□□□ -0.84
USP28-212ENST00000544750 CA11O75493 328 aa9.78□□□□□ -0.84
USP28-212ENST00000544750 TMEM50BP56557 158 aa9.78□□□□□ -0.84
USP28-212ENST00000544750 CX3CL1P78423 397 aa9.78□□□□□ -0.84
USP28-212ENST00000544750 C2orf76Q3KRA6 126 aa9.78□□□□□ -0.84
USP28-212ENST00000544750 IL34Q6ZMJ4 242 aa9.78□□□□□ -0.84
USP28-212ENST00000544750 ANKRD13BQ86YJ7 626 aa9.78□□□□□ -0.84
USP28-212ENST00000544750 FAM3DQ96BQ1 224 aa9.78□□□□□ -0.84
USP28-212ENST00000544750 FAAP24Q9BTP7 215 aa9.78□□□□□ -0.84
USP28-212ENST00000544750 OR51E2Q9H255 320 aa9.78□□□□□ -0.84
USP28-212ENST00000544750 RETNQ9HD89 108 aa9.78□□□□□ -0.84
USP28-212ENST00000544750 STEAP1Q9UHE8 339 aa9.78□□□□□ -0.84
USP28-212ENST00000544750 TRAPPC2LQ9UL33 140 aa9.78□□□□□ -0.84
USP28-212ENST00000544750 PCLOQ9Y6V0 5065 aa9.77□□□□□ -0.85
USP28-212ENST00000544750 A0A0B4J203 849 aa9.77□□□□□ -0.85
USP28-212ENST00000544750 SMIM30A4D0T7 59 aa9.77□□□□□ -0.85
USP28-212ENST00000544750 IFITM5A6NNB3 132 aa9.77□□□□□ -0.85
USP28-212ENST00000544750 FCN1O00602 326 aa9.77□□□□□ -0.85
USP28-212ENST00000544750 NAPSAO96009 420 aa9.77□□□□□ -0.85
USP28-212ENST00000544750 RAB3BP20337 219 aa9.77□□□□□ -0.85
USP28-212ENST00000544750 MYL9P24844 172 aa9.77□□□□□ -0.85
USP28-212ENST00000544750 NEDD8Q15843 81 aa9.77□□□□□ -0.85
USP28-212ENST00000544750 PYHIN1Q6K0P9 492 aa9.77□□□□□ -0.85
USP28-212ENST00000544750 ZNF880Q6PDB4 577 aa9.77□□□□□ -0.85
USP28-212ENST00000544750 ZNF833PQ6ZTB9 187 aa9.77□□□□□ -0.85
USP28-212ENST00000544750 LINC00476Q8WZB0 136 aa9.77□□□□□ -0.85
USP28-212ENST00000544750 NEDD4LQ96PU5 975 aa9.77□□□□□ -0.85
USP28-212ENST00000544750 RNF167Q9H6Y7 350 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms