RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 SLC22A1O15245 554 aa4.18□□□□□ -1.74
CLIP1-217ENST00000543205 OR2H2O95918 312 aa4.18□□□□□ -1.74
CLIP1-217ENST00000543205 DUX4L2P0CJ85 424 aa4.18□□□□□ -1.74
CLIP1-217ENST00000543205 DUX4L3P0CJ86 424 aa4.18□□□□□ -1.74
CLIP1-217ENST00000543205 DUX4L4P0CJ87 422 aa4.18□□□□□ -1.74
CLIP1-217ENST00000543205 DUX4L5P0CJ88 424 aa4.18□□□□□ -1.74
CLIP1-217ENST00000543205 DUX4L6P0CJ89 424 aa4.18□□□□□ -1.74
CLIP1-217ENST00000543205 DUX4L7P0CJ90 424 aa4.18□□□□□ -1.74
CLIP1-217ENST00000543205 GABRR1P24046 479 aa4.18□□□□□ -1.74
CLIP1-217ENST00000543205 VBP1P61758 197 aa4.18□□□□□ -1.74
CLIP1-217ENST00000543205 TSPAN5P62079 268 aa4.18□□□□□ -1.74
CLIP1-217ENST00000543205 USF2Q15853 346 aaPredicted RBP4.18□□□□□ -1.74
CLIP1-217ENST00000543205 DGUOKQ16854 277 aa4.18□□□□□ -1.74
CLIP1-217ENST00000543205 PIGYQ3MUY2 71 aa4.18□□□□□ -1.74
CLIP1-217ENST00000543205 SAPCD1Q5SSQ6 148 aa4.18□□□□□ -1.74
CLIP1-217ENST00000543205 C1orf100Q5SVJ3 147 aa4.18□□□□□ -1.74
CLIP1-217ENST00000543205 FAHD2BQ6P2I3 314 aaPredicted RBP4.18□□□□□ -1.74
CLIP1-217ENST00000543205 DUX4L9Q6RFH8 374 aaPredicted RBP4.18□□□□□ -1.74
CLIP1-217ENST00000543205 Q71RC1 249 aaPredicted RBP4.18□□□□□ -1.74
CLIP1-217ENST00000543205 LYPD6Q86Y78 171 aa4.18□□□□□ -1.74
CLIP1-217ENST00000543205 CHST4Q8NCG5 386 aa4.18□□□□□ -1.74
CLIP1-217ENST00000543205 OR4C5Q8NGB2 326 aa4.18□□□□□ -1.74
CLIP1-217ENST00000543205 OR4M2Q8NGB6 313 aa4.18□□□□□ -1.74
CLIP1-217ENST00000543205 OR1L6Q8NGR2 347 aa4.18□□□□□ -1.74
CLIP1-217ENST00000543205 H1FXQ92522 213 aaKnown RBP4.18□□□□□ -1.74
CLIP1-217ENST00000543205 FAHD2AQ96GK7 314 aa4.18□□□□□ -1.74
CLIP1-217ENST00000543205 MCRIP2Q9BUT9 160 aaKnown RBP4.18□□□□□ -1.74
CLIP1-217ENST00000543205 CST11Q9H112 138 aa4.18□□□□□ -1.74
CLIP1-217ENST00000543205 C5orf66Q9H5L9 145 aa4.18□□□□□ -1.74
CLIP1-217ENST00000543205 DUX4Q9UBX2 424 aa4.18□□□□□ -1.74
CLIP1-217ENST00000543205 ST3GAL6Q9Y274 331 aa4.18□□□□□ -1.74
CLIP1-217ENST00000543205 ATRQ13535 2644 aa4.18□□□□□ -1.74
CLIP1-217ENST00000543205 MAP1AP78559 2803 aaPredicted RBP4.18□□□□□ -1.74
CLIP1-217ENST00000543205 PPIAL4CA0A0B4J2A2 164 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 IGHV2-70DA0A0C4DH43 119 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 KRTAP23-1A1A580 65 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 IFITM5A6NNB3 132 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 SERPINE3A8MV23 424 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 K7N7A8 449 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 ENSAO43768 121 aaKnown RBP4.17□□□□□ -1.74
CLIP1-217ENST00000543205 CD37P11049 281 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 ARSBP15848 533 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 MGMTP16455 207 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 SDC2P34741 201 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 RPL5P46777 297 aaKnown RBP4.17□□□□□ -1.74
CLIP1-217ENST00000543205 CAV3P56539 151 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 RBM11P57052 281 aaKnown RBP4.17□□□□□ -1.74
CLIP1-217ENST00000543205 OR10A3P58181 314 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 LSM3P62310 102 aaKnown RBP4.17□□□□□ -1.74
CLIP1-217ENST00000543205 MXD1Q05195 221 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 GRK1Q15835 563 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 HES5Q5TA89 166 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 GDPD3Q7L5L3 318 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 LINC00596Q86U02 117 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 LDLRAD3Q86YD5 345 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 MMD2Q8IY49 270 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 ADAD2Q8NCV1 583 aaKnown RBP4.17□□□□□ -1.74
CLIP1-217ENST00000543205 OR2AK2Q8NG84 335 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 OR51T1Q8NGJ9 327 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 NANPQ8TBE9 248 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 NUDCD2Q8WVJ2 157 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 MRPS24Q96EL2 167 aaKnown RBP4.17□□□□□ -1.74
CLIP1-217ENST00000543205 AKR1E2Q96JD6 320 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 SELENOIQ9C0D9 397 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 RIMS4Q9H426 269 aaPredicted RBP4.17□□□□□ -1.74
CLIP1-217ENST00000543205 BANF2Q9H503 90 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 RNF167Q9H6Y7 350 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 MMP26Q9NRE1 261 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 GSN-AS1Q9NRJ2 163 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 RCC2Q9P258 522 aaKnown RBP4.17□□□□□ -1.74
CLIP1-217ENST00000543205 KPTNQ9Y664 436 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 A0A0G2JK05 382 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 KIR2DS1A0A191URI9 304 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 A0A1W2PP11 408 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 FUOMA2VDF0 154 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 FAM90A26D6RGX4 464 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 J3QLI3 93 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 HSPB6O14558 160 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 GEMIN2O14893 280 aaKnown RBP4.17□□□□□ -1.74
CLIP1-217ENST00000543205 OR7C1O76099 320 aaPredicted RBP4.17□□□□□ -1.74
CLIP1-217ENST00000543205 NDUFA7O95182 113 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 TFAP2AP05549 437 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 PPIAL4GP0DN37 164 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 LMO1P25800 156 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 GPR12P47775 334 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 ALDH3B2P48448 385 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 CLDN12P56749 244 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 EDDM3BP56851 147 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 RPL31P62899 125 aaKnown RBP4.17□□□□□ -1.74
CLIP1-217ENST00000543205 EDDM3AQ14507 147 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 TAF9Q16594 264 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 MPV17LQ2QL34 196 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 PHLDA2Q53GA4 152 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 PAN3Q58A45 887 aaKnown RBP4.17□□□□□ -1.74
CLIP1-217ENST00000543205 NHLRC3Q5JS37 347 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 ATAD3CQ5T2N8 411 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 GPR107Q5VW38 600 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 OR52W1Q6IF63 320 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 Q6P435 159 aa4.17□□□□□ -1.74
CLIP1-217ENST00000543205 TMEM104Q8NE00 496 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms