RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 LY86O95711 162 aa10.54□□□□□ -0.72
RNF4-222ENST00000541204 MPV17P39210 176 aa10.54□□□□□ -0.72
RNF4-222ENST00000541204 KIR2DL2P43627 348 aaPredicted RBP10.54□□□□□ -0.72
RNF4-222ENST00000541204 CEBPDP49716 269 aaPredicted RBP10.54□□□□□ -0.72
RNF4-222ENST00000541204 RND2P52198 227 aa10.54□□□□□ -0.72
RNF4-222ENST00000541204 HBG1P69891 147 aa10.54□□□□□ -0.72
RNF4-222ENST00000541204 HBG2P69892 147 aa10.54□□□□□ -0.72
RNF4-222ENST00000541204 GABRA6Q16445 453 aa10.54□□□□□ -0.72
RNF4-222ENST00000541204 SCCPDHQ8NBX0 429 aa10.54□□□□□ -0.72
RNF4-222ENST00000541204 OR4C12Q96R67 309 aa10.54□□□□□ -0.72
RNF4-222ENST00000541204 TAAR6Q96RI8 345 aa10.54□□□□□ -0.72
RNF4-222ENST00000541204 PSMG3Q9BT73 122 aaPredicted RBP10.54□□□□□ -0.72
RNF4-222ENST00000541204 OPA3Q9H6K4 179 aa10.54□□□□□ -0.72
RNF4-222ENST00000541204 TMEM242Q9NWH2 141 aa10.54□□□□□ -0.72
RNF4-222ENST00000541204 MUC6Q6W4X9 2439 aa10.53□□□□□ -0.72
RNF4-222ENST00000541204 DIDO1Q9BTC0 2240 aaKnown RBP10.53□□□□□ -0.72
RNF4-222ENST00000541204 MAP1LC3B2A6NCE7 125 aa10.53□□□□□ -0.72
RNF4-222ENST00000541204 OR5B21A6NL26 309 aa10.53□□□□□ -0.72
RNF4-222ENST00000541204 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.53□□□□□ -0.72
RNF4-222ENST00000541204 GATCO43716 136 aaKnown RBP10.53□□□□□ -0.72
RNF4-222ENST00000541204 IGHG3P01860 377 aa10.53□□□□□ -0.72
RNF4-222ENST00000541204 TFF1P04155 84 aa10.53□□□□□ -0.72
RNF4-222ENST00000541204 PGA5P0DJD9 388 aa10.53□□□□□ -0.72
RNF4-222ENST00000541204 HOXC12P31275 282 aa10.53□□□□□ -0.72
RNF4-222ENST00000541204 PSG7Q13046 419 aa10.53□□□□□ -0.72
RNF4-222ENST00000541204 MRPL49Q13405 166 aaKnown RBP10.53□□□□□ -0.72
RNF4-222ENST00000541204 Q6P435 159 aa10.53□□□□□ -0.72
RNF4-222ENST00000541204 MAP1LC3BQ9GZQ8 125 aa10.53□□□□□ -0.72
RNF4-222ENST00000541204 WDR61Q9GZS3 305 aaKnown RBP10.53□□□□□ -0.72
RNF4-222ENST00000541204 PRDM13Q9H4Q3 707 aa10.53□□□□□ -0.72
RNF4-222ENST00000541204 VAX2Q9UIW0 290 aa10.53□□□□□ -0.72
RNF4-222ENST00000541204 TRAPPC2LQ9UL33 140 aa10.53□□□□□ -0.72
RNF4-222ENST00000541204 RNF150Q9ULK6 438 aa10.53□□□□□ -0.72
RNF4-222ENST00000541204 ELOA3CA0A087WX78 387 aaPredicted RBP10.53□□□□□ -0.72
RNF4-222ENST00000541204 UBE2L5PA0A1B0GUS4 154 aa10.53□□□□□ -0.72
RNF4-222ENST00000541204 OR5H1A6NKK0 313 aa10.53□□□□□ -0.72
RNF4-222ENST00000541204 SERF2P84101 59 aa10.53□□□□□ -0.72
RNF4-222ENST00000541204 TMEM41BQ5BJD5 291 aa10.53□□□□□ -0.72
RNF4-222ENST00000541204 OR8G2PQ6IF36 304 aa10.53□□□□□ -0.72
RNF4-222ENST00000541204 Q6ZT83 130 aa10.53□□□□□ -0.72
RNF4-222ENST00000541204 SNX22Q96L94 193 aa10.53□□□□□ -0.72
RNF4-222ENST00000541204 RTL8AQ9BWD3 113 aa10.53□□□□□ -0.72
RNF4-222ENST00000541204 OPN3Q9H1Y3 402 aaPredicted RBP10.53□□□□□ -0.72
RNF4-222ENST00000541204 OBP2BQ9NPH6 170 aa10.53□□□□□ -0.72
RNF4-222ENST00000541204 PIEZO2Q9H5I5 2752 aa10.53□□□□□ -0.72
RNF4-222ENST00000541204 PIGBOS1A0A0B4J2F0 54 aa10.52□□□□□ -0.73
RNF4-222ENST00000541204 HMGB3O15347 200 aaKnown RBP10.52□□□□□ -0.73
RNF4-222ENST00000541204 ZNF737O75373 536 aa10.52□□□□□ -0.73
RNF4-222ENST00000541204 PTBP3O95758 552 aaKnown RBP10.52□□□□□ -0.73
RNF4-222ENST00000541204 CD55P08174 381 aa10.52□□□□□ -0.73
RNF4-222ENST00000541204 FABP6P51161 128 aa10.52□□□□□ -0.73
RNF4-222ENST00000541204 ZNF826PQ6ZT77 177 aa10.52□□□□□ -0.73
RNF4-222ENST00000541204 MRGPRGQ86SM5 289 aa10.52□□□□□ -0.73
RNF4-222ENST00000541204 P2RX4Q99571 388 aa10.52□□□□□ -0.73
RNF4-222ENST00000541204 J3QT63 122 aa10.52□□□□□ -0.73
RNF4-222ENST00000541204 NXPH2O95156 264 aa10.52□□□□□ -0.73
RNF4-222ENST00000541204 OR2H2O95918 312 aa10.52□□□□□ -0.73
RNF4-222ENST00000541204 IGKV1D-33P01593 117 aa10.52□□□□□ -0.73
RNF4-222ENST00000541204 IGKV1-33P01594 117 aa10.52□□□□□ -0.73
RNF4-222ENST00000541204 HIST1H1BP16401 226 aaKnown RBP10.52□□□□□ -0.73
RNF4-222ENST00000541204 CEACAM6P40199 344 aa10.52□□□□□ -0.73
RNF4-222ENST00000541204 TCF15Q12870 199 aa10.52□□□□□ -0.73
RNF4-222ENST00000541204 WDR25Q64LD2 544 aaPredicted RBP10.52□□□□□ -0.73
RNF4-222ENST00000541204 RHOVQ96L33 236 aa10.52□□□□□ -0.73
RNF4-222ENST00000541204 LIN7CQ9NUP9 197 aaKnown RBP10.52□□□□□ -0.73
RNF4-222ENST00000541204 KIAA2026Q5HYC2 2103 aa10.51□□□□□ -0.73
RNF4-222ENST00000541204 LRP5LA4QPB2 252 aa10.51□□□□□ -0.73
RNF4-222ENST00000541204 NPIPB11E5RHQ5 1161 aa10.51□□□□□ -0.73
RNF4-222ENST00000541204 PHOX2AO14813 284 aa10.51□□□□□ -0.73
RNF4-222ENST00000541204 WNT2P09544 360 aa10.51□□□□□ -0.73
RNF4-222ENST00000541204 GPX4P36969 197 aaPredicted RBP10.51□□□□□ -0.73
RNF4-222ENST00000541204 DEFA6Q01524 100 aa10.51□□□□□ -0.73
RNF4-222ENST00000541204 SLC38A11Q08AI6 406 aa10.51□□□□□ -0.73
RNF4-222ENST00000541204 ADIRFQ15847 76 aa10.51□□□□□ -0.73
RNF4-222ENST00000541204 ZNF497Q6ZNH5 498 aa10.51□□□□□ -0.73
RNF4-222ENST00000541204 FGFRL1Q8N441 504 aa10.51□□□□□ -0.73
RNF4-222ENST00000541204 RPP25LQ8N5L8 163 aaKnown RBP10.51□□□□□ -0.73
RNF4-222ENST00000541204 DRAM1Q8N682 238 aa10.51□□□□□ -0.73
RNF4-222ENST00000541204 KLF14Q8TD94 323 aaPredicted RBP10.51□□□□□ -0.73
RNF4-222ENST00000541204 TAF15Q92804 592 aaKnown RBP eCLIP10.51□□□□□ -0.736e-6■■■■□ 22
RNF4-222ENST00000541204 LHX4Q969G2 390 aa10.51□□□□□ -0.73
RNF4-222ENST00000541204 UFSP2Q9NUQ7 469 aa10.51□□□□□ -0.73
RNF4-222ENST00000541204 GFOD1Q9NXC2 390 aa10.51□□□□□ -0.73
RNF4-222ENST00000541204 WNT9BO14905 357 aa10.51□□□□□ -0.73
RNF4-222ENST00000541204 CD81P60033 236 aa10.51□□□□□ -0.73
RNF4-222ENST00000541204 GAMTQ14353 236 aa10.51□□□□□ -0.73
RNF4-222ENST00000541204 NECAP1Q8NC96 275 aa10.51□□□□□ -0.73
RNF4-222ENST00000541204 S100PBPQ96BU1 408 aa10.51□□□□□ -0.73
RNF4-222ENST00000541204 SARAFQ96BY9 339 aa10.51□□□□□ -0.73
RNF4-222ENST00000541204 PKIBQ9C010 78 aa10.51□□□□□ -0.73
RNF4-222ENST00000541204 MSL2Q9HCI7 577 aa10.51□□□□□ -0.73
RNF4-222ENST00000541204 SLC39A9Q9NUM3 307 aa10.51□□□□□ -0.73
RNF4-222ENST00000541204 TRBV24-1A0A075B6N3 115 aa10.5□□□□□ -0.73
RNF4-222ENST00000541204 CLDN1O95832 211 aa10.5□□□□□ -0.73
RNF4-222ENST00000541204 OPN1MWP04001 364 aa10.5□□□□□ -0.73
RNF4-222ENST00000541204 OPN1MW2P0DN77 364 aa10.5□□□□□ -0.73
RNF4-222ENST00000541204 OPN1MW3P0DN78 364 aa10.5□□□□□ -0.73
RNF4-222ENST00000541204 SMIM7Q9BQ49 75 aa10.5□□□□□ -0.73
RNF4-222ENST00000541204 ANKRD11Q6UB99 2663 aaPredicted RBP10.5□□□□□ -0.73
RNF4-222ENST00000541204 AQP7O14520 342 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms