RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 NEDD8Q15843 81 aa16.21■□□□□ 0.19
VPS28-206ENST00000526734 TIMM50Q3ZCQ8 353 aa16.21■□□□□ 0.19
VPS28-206ENST00000526734 SFXN4Q6P4A7 337 aa16.21■□□□□ 0.19
VPS28-206ENST00000526734 OR10J5Q8NHC4 309 aa16.21■□□□□ 0.19
VPS28-206ENST00000526734 OR51E2Q9H255 320 aa16.21■□□□□ 0.19
VPS28-206ENST00000526734 VCX3AQ9NNX9 186 aa16.21■□□□□ 0.19
VPS28-206ENST00000526734 DAPK2Q9UIK4 370 aa16.21■□□□□ 0.19
VPS28-206ENST00000526734 GAB2Q9UQC2 676 aa16.21■□□□□ 0.19
VPS28-206ENST00000526734 TRBV6-7A0A0A0MS04 114 aa16.2■□□□□ 0.18
VPS28-206ENST00000526734 CD36P16671 472 aa16.2■□□□□ 0.18
VPS28-206ENST00000526734 MYCNOSP40205 109 aa16.2■□□□□ 0.18
VPS28-206ENST00000526734 PITPNAQ00169 270 aa16.2■□□□□ 0.18
VPS28-206ENST00000526734 CFHR3Q02985 330 aa16.2■□□□□ 0.18
VPS28-206ENST00000526734 LIN54Q6MZP7 749 aa16.2■□□□□ 0.18
VPS28-206ENST00000526734 ZNF695Q8IW36 515 aa16.2■□□□□ 0.18
VPS28-206ENST00000526734 OR51J1Q9H342 316 aa16.2■□□□□ 0.18
VPS28-206ENST00000526734 A0A075B6Q4 140 aa16.19■□□□□ 0.18
VPS28-206ENST00000526734 SMIM30A4D0T7 59 aa16.19■□□□□ 0.18
VPS28-206ENST00000526734 H7C2Y5 167 aa16.19■□□□□ 0.18
VPS28-206ENST00000526734 BET1O15155 118 aa16.19■□□□□ 0.18
VPS28-206ENST00000526734 SPDEFO95238 335 aa16.19■□□□□ 0.18
VPS28-206ENST00000526734 APOA2P02652 100 aa16.19■□□□□ 0.18
VPS28-206ENST00000526734 TFAP2AP05549 437 aa16.19■□□□□ 0.18
VPS28-206ENST00000526734 GSTP1P09211 210 aaKnown RBP16.19■□□□□ 0.18
VPS28-206ENST00000526734 SDC2P34741 201 aa16.19■□□□□ 0.18
VPS28-206ENST00000526734 OXLD1Q5BKU9 147 aa16.19■□□□□ 0.18
VPS28-206ENST00000526734 PDPNQ86YL7 162 aa16.19■□□□□ 0.18
VPS28-206ENST00000526734 KLHL30-AS1Q8NEE0 82 aa16.19■□□□□ 0.18
VPS28-206ENST00000526734 NECAP2Q9NVZ3 263 aa16.19■□□□□ 0.18
VPS28-206ENST00000526734 ETV7Q9Y603 341 aa16.19■□□□□ 0.18
VPS28-206ENST00000526734 LOC100506127A0A0U1RQW1 187 aa16.18■□□□□ 0.18
VPS28-206ENST00000526734 RRHO14718 337 aa16.18■□□□□ 0.18
VPS28-206ENST00000526734 TNFAIP8O95379 198 aa16.18■□□□□ 0.18
VPS28-206ENST00000526734 GSTT2P0CG29 244 aa16.18■□□□□ 0.18
VPS28-206ENST00000526734 GSTT2BP0CG30 244 aa16.18■□□□□ 0.18
VPS28-206ENST00000526734 CDX1P47902 265 aaPredicted RBP16.18■□□□□ 0.18
VPS28-206ENST00000526734 THBS3P49746 956 aa16.18■□□□□ 0.18
VPS28-206ENST00000526734 TAGLNQ01995 201 aaKnown RBP16.18■□□□□ 0.18
VPS28-206ENST00000526734 CDNFQ49AH0 187 aa16.18■□□□□ 0.18
VPS28-206ENST00000526734 HACD4Q5VWC8 232 aa16.18■□□□□ 0.18
VPS28-206ENST00000526734 ZNF660Q6AZW8 331 aaPredicted RBP16.18■□□□□ 0.18
VPS28-206ENST00000526734 LINC00482Q8N8I6 264 aa16.18■□□□□ 0.18
VPS28-206ENST00000526734 TSNAXQ99598 290 aaKnown RBP16.18■□□□□ 0.18
VPS28-206ENST00000526734 GINS4Q9BRT9 223 aa16.18■□□□□ 0.18
VPS28-206ENST00000526734 MCRIP2Q9BUT9 160 aaKnown RBP16.18■□□□□ 0.18
VPS28-206ENST00000526734 DCSTAMPQ9H295 470 aa16.18■□□□□ 0.18
VPS28-206ENST00000526734 A0A087WXM4 84 aa16.17■□□□□ 0.18
VPS28-206ENST00000526734 IGHV7-81A0A0B4J1V7 117 aa16.17■□□□□ 0.18
VPS28-206ENST00000526734 CTXN2P0C2S0 81 aa16.17■□□□□ 0.18
VPS28-206ENST00000526734 CNTFRP26992 372 aa16.17■□□□□ 0.18
VPS28-206ENST00000526734 PLGLAQ15195 96 aa16.17■□□□□ 0.18
VPS28-206ENST00000526734 IGSF11Q5DX21 431 aa16.17■□□□□ 0.18
VPS28-206ENST00000526734 GLDNQ6ZMI3 551 aaPredicted RBP16.17■□□□□ 0.18
VPS28-206ENST00000526734 ETV3LQ6ZN32 361 aa16.17■□□□□ 0.18
VPS28-206ENST00000526734 LGALS14Q8TCE9 139 aa16.17■□□□□ 0.18
VPS28-206ENST00000526734 RITA1Q96K30 269 aa16.17■□□□□ 0.18
VPS28-206ENST00000526734 PARP11Q9NR21 331 aa16.17■□□□□ 0.18
VPS28-206ENST00000526734 RHBDL2Q9NX52 303 aa16.17■□□□□ 0.18
VPS28-206ENST00000526734 RNF150Q9ULK6 438 aa16.17■□□□□ 0.18
VPS28-206ENST00000526734 NOTCH3Q9UM47 2321 aa16.16■□□□□ 0.18
VPS28-206ENST00000526734 A0A0A6YYH2 397 aa16.16■□□□□ 0.18
VPS28-206ENST00000526734 A6NJ64 397 aa16.16■□□□□ 0.18
VPS28-206ENST00000526734 M0R1X1 148 aa16.16■□□□□ 0.18
VPS28-206ENST00000526734 ATP6V0E1O15342 81 aa16.16■□□□□ 0.18
VPS28-206ENST00000526734 PROP1O75360 226 aa16.16■□□□□ 0.18
VPS28-206ENST00000526734 RPLP1P05386 114 aaKnown RBP16.16■□□□□ 0.18
VPS28-206ENST00000526734 SNRPBP14678 240 aaKnown RBP16.16■□□□□ 0.18
VPS28-206ENST00000526734 IGLL1P15814 213 aa16.16■□□□□ 0.18
VPS28-206ENST00000526734 PSMB8P28062 276 aa16.16■□□□□ 0.18
VPS28-206ENST00000526734 CRIP2P52943 208 aaPredicted RBP16.16■□□□□ 0.18
VPS28-206ENST00000526734 C8orf86Q6ZUL3 223 aa16.16■□□□□ 0.18
VPS28-206ENST00000526734 CROCCP3Q8IVE0 287 aa16.16■□□□□ 0.18
VPS28-206ENST00000526734 MRPL41Q8IXM3 137 aaKnown RBP16.16■□□□□ 0.18
VPS28-206ENST00000526734 TCTEX1D1Q8N7M0 179 aa16.16■□□□□ 0.18
VPS28-206ENST00000526734 OR8U1Q8NH10 309 aa16.16■□□□□ 0.18
VPS28-206ENST00000526734 P2RX4Q99571 388 aa16.16■□□□□ 0.18
VPS28-206ENST00000526734 OR2D2Q9H210 308 aa16.16■□□□□ 0.18
VPS28-206ENST00000526734 ZNF230Q9UIE0 474 aaPredicted RBP16.16■□□□□ 0.18
VPS28-206ENST00000526734 TRAV41A0A0B4J266 112 aa16.15■□□□□ 0.18
VPS28-206ENST00000526734 OR8U9P0C7N5 309 aa16.15■□□□□ 0.18
VPS28-206ENST00000526734 PPIFP30405 207 aaKnown RBP16.15■□□□□ 0.18
VPS28-206ENST00000526734 MXD1Q05195 221 aa16.15■□□□□ 0.18
VPS28-206ENST00000526734 CBX3Q13185 183 aa16.15■□□□□ 0.18
VPS28-206ENST00000526734 TMEM65Q6PI78 240 aa16.15■□□□□ 0.18
VPS28-206ENST00000526734 ZNF383Q8NA42 475 aa16.15■□□□□ 0.18
VPS28-206ENST00000526734 TSPAN14Q8NG11 270 aa16.15■□□□□ 0.18
VPS28-206ENST00000526734 FBXL15Q9H469 300 aa16.15■□□□□ 0.18
VPS28-206ENST00000526734 RBM7Q9Y580 266 aaKnown RBP16.15■□□□□ 0.18
VPS28-206ENST00000526734 GNG2P59768 71 aa16.14■□□□□ 0.17
VPS28-206ENST00000526734 H1FOOQ8IZA3 346 aaPredicted RBP16.14■□□□□ 0.17
VPS28-206ENST00000526734 MYOZ3Q8TDC0 251 aa16.14■□□□□ 0.17
VPS28-206ENST00000526734 C4orf3Q8WVX3 66 aa16.14■□□□□ 0.17
VPS28-206ENST00000526734 MAFIPQ8WZ33 124 aa16.14■□□□□ 0.17
VPS28-206ENST00000526734 DPF1Q92782 380 aa16.14■□□□□ 0.17
VPS28-206ENST00000526734 FLYWCH2Q96CP2 140 aaKnown RBP16.14■□□□□ 0.17
VPS28-206ENST00000526734 RBMXL1Q96E39 390 aaKnown RBP16.14■□□□□ 0.17
VPS28-206ENST00000526734 ADTRPQ96IZ2 230 aa16.14■□□□□ 0.17
VPS28-206ENST00000526734 SLC35D1Q9NTN3 355 aa16.14■□□□□ 0.17
VPS28-206ENST00000526734 RRASP10301 218 aa16.13■□□□□ 0.17
VPS28-206ENST00000526734 LGALS7P47929 136 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms